The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
7
|
sequence length |
131
|
structure length |
131
|
Chain Sequence |
GSHMDKTFCVVVQNRIKEGYRRAGFSFHLGDNSLAAVSESQLAQLKADPRLVVQITETGSQEGGEGLSKEPAGSDEQKQLRADPPSTDLNTFTVEQLKAQLTERGITFKQSATKAELIALFAPADGEKSEA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Solution structure of HI1506, a novel two-domain protein from Haemophilus influenzae.
pubmed doi rcsb |
| molecule keywords |
Mu-like prophage FluMu protein gp35, Protein HI1507 in Mu-li
|
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Haemophilus influenzae
|
| total genus |
7
|
| structure length |
131
|
| sequence length |
131
|
| ec nomenclature | |
| pdb deposition date | 2007-02-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF12949 | HeH | HeH/LEM domain |
| A | PF17891 | FluMu_N | Mu-like prophage FluMu N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | cAMP-dependent Protein Kinase, Chain A | cAMP-dependent Protein Kinase, Chain A | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Ribosomal Protein L9; domain 1 | Ribosomal Protein L9; domain 1 |
#chains in the Genus database with same CATH superfamily 2OUT A; 2RQY A; #chains in the Genus database with same CATH topology 4KW7 A; 2CBG A; 3TBN A; 1L6E A; 2EHO C; 3CO4 A; 2HBB A; 5GHS C; 4F9K A; 2HJQ A; 2QH7 A; 3S4D A; 2E9X B; 2KNG A; 3TBO A; 3QDE A; 3ACS A; 4FSD A; 2CB9 A; 3S2R A; 2E9X D; 2Q9Q A; 2LSM A; 2CQS A; 4F1E A; 3RSY A; 2EZW A; 3ACT A; 2HBA A; 3QFZ A; 2R13 A; 4F2C A; 4ZP3 A; 5EG5 A; 2RQY A; 3S4B A; 4OO7 A; 4F28 A; 3S4A A; 2DRN A; 2IZY A; 1DIV A; 5HVZ A; 3G36 A; 4UY8 H; 3LPQ A; 3S2Q A; 1CQU A; 2I15 A; 2HVF A; 3EW0 A; 2CQT A; 3IM4 A; 1R2A A; 4RIQ A; 3AFJ A; 2X49 A; 2QD0 A; 4EZF A; 5GHR B; 4FR0 A; 2OUT A; 3FND A; 3PMI A; 3RRS A; 3UFE A; 2K9Q A; 3ANW A; 3QG0 A; 2H9R A; 4RT4 A; 3FNV A; 3S4C A; 2KYG A; 3J7Z H; 4FS8 A; 2Q9Q B; 3QFY A; 3IM3 A; 4RTA A; 2X4A A; 4OOA A; 3REE A; 4RSR A; 3GWH A; #chains in the Genus database with same CATH homology 4KW7 A; 2CBG A; 3LPQ A; 4F1E A; 3UFE A; 3TBN A; 2K9Q A; 2EHO C; 3ANW A; 3S2Q A; 3EW0 A; 5GHS C; 2QH7 A; 2R13 A; 3FNV A; 2E9X B; 4F2C A; 5EG5 A; 2RQY A; 2KNG A; 4FS8 A; 3TBO A; 2Q9Q B; 2X49 A; 4FSD A; 4OO7 A; 2QD0 A; 4F28 A; 4EZF A; 2CB9 A; 2X4A A; 3S2R A; 5GHR B; 4FR0 A; 2Q9Q A; 2E9X D; 2OUT A; 4OOA A; 2LSM A; 3PMI A; 3REE A; 4RSR A; 3GWH A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
