2VBJB

Molecular basis of human xpc gene recognition and cleavage by engineered homing endonuclease heterodimers
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
152
structure length
152
Chain Sequence
NTKYNKEFLLYLAGFVDADGSIIAQIEPNQSSKFKHRLKLTFQVTQKTQRRWFLDKLVDEIGVGYVRDSGSVSNYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (52-62)EMPTYAH5 (119-135)S1 (21-29)TI2 (33-36)TI1 (30-33)AH4 (98-116)S2 (37-48)S3 (66-70)TII'1 (70-73)S4 (73-78)TIV1 (95-98)TIV2 (138-141)AH1 (7-20)3H1 (49-51)3H2 (92-94)AH3 (81-91)AH6 (145-151)Updating...
connected with : NaN
molecule tags Hydrolase/dna
source organism Chlamydomonas reinhardtii
publication title Molecular Basis of Xeroderma Pigmentosum Group C DNA Recognition by Engineered Meganucleases
pubmed doi rcsb
molecule keywords DNA ENDONUCLEASE I-CREI
total genus 48
structure length 152
sequence length 152
ec nomenclature ec 3.1.-.-:
pdb deposition date 2007-09-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 2vbjB00
3OOLA 5E63A 1LWSA 5AKMA 3C0XA 4LOXA 2FLDA 2QOJZ 1U0CA 5A78A 3MXAA 1T9JA 4UN8A 2DCHX 1R7MA 1M5XA 3MIPA 4D6NA 2VS7A 2CW7A 5A74A 4AABA 5A0WA 4D6OA 4AQUA 4EFJA 2XE0B 1DQ3A 3R7PA 5A77A 3UVFA 4AQXA 1UM2A 5A0MA 5E5SA 3MXBB 1MOWA 1U0DA 4UN7G 2AB5A 2I3PA 4AAGA 2CW8A 5AKFA 2EX5A 4UN9A 1G9YA 4Z1XA 3E54A 2VBNB 4AAEA 5E67A 4YHXA 5AKNA 4UN8G 2O7MA 1JVAA 1VDEA 3MXBA 2VBJB 3QQYA 4Z20A 5AK9A 2VBOB 3HYIA 1N3EA 2VS8A 4UNCA 1LWTA 1DFAA 1G9ZA 1B24A 3MISA 3MX9A 2VBLB 5E5OA 3KO2A 3FD2A 4Z1ZA 1BP7A 2I3QA 2XE0A 1AF5A 1EF0A 2VBJA 5A0MB 2VBOA 4AAFA 4YITA 4UT0A 4UN9G 4YISA 4UNAA 4LQ0A 4UN7A 1P8KZ 3EH8A 4UNBA 3C0WA 1N3FA 2VBLA 4AADA 3OORA 5A72A 1T9IA 3HYJA 2VBNA
chains in the Genus database with same CATH superfamily
3OOLA 5E63A 1LWSA 5AKMA 3C0XA 4LOXA 2FLDA 2QOJZ 1U0CA 5A78A 3MXAA 1T9JA 4UN8A 2DCHX 1R7MA 1M5XA 3MIPA 4D6NA 2VS7A 2CW7A 2F4LA 5A74A 4AABA 5A0WA 4D6OA 4AQUA 4EFJA 2XE0B 1DQ3A 3R7PA 5A77A 3UVFA 4AQXA 1UM2A 5A0MA 5E5SA 3MXBB 1MOWA 1U0DA 4UN7G 2AB5A 2I3PA 4AAGA 2CW8A 5AKFA 2EX5A 4UN9A 1G9YA 4Z1XA 3E54A 2VBNB 4AAEA 5E67A 4KZSA 4YHXA 5AKNA 4UN8G 2O7MA 1JVAA 1VDEA 3MXBA 2VBJB 3QQYA 4Z20A 5AK9A 2VBOB 3HYIA 1N3EA 2VS8A 4UNCA 1LWTA 1DFAA 1G9ZA 1B24A 3MISA 3MX9A 2VBLB 5E5OA 3KO2A 3FD2A 4Z1ZA 1BP7A 2I3QA 2XE0A 1AF5A 1EF0A 2VBJA 5A0MB 2VBOA 4AAFA 4YITA 4UT0A 4UN9G 4YISA 4UNAA 4LQ0A 4UN7A 1P8KZ 3EH8A 4UNBA 3C0WA 1N3FA 2VBLA 4AADA 3OORA 5A72A 1T9IA 3HYJA 2VBNA
chains in the Genus database with same CATH topology
3OOLA 5E63A 1LWSA 5AKMA 3C0XA 4LOXA 2FLDA 2QOJZ 1U0CA 5A78A 3MXAA 1T9JA 4UN8A 2DCHX 1R7MA 1M5XA 3MIPA 4D6NA 2VS7A 2CW7A 5A74A 4AABA 5A0WA 4D6OA 4AQUA 4EFJA 2XE0B 1DQ3A 3R7PA 5A77A 3UVFA 4AQXA 1UM2A 5A0MA 5E5SA 3MXBB 1MOWA 1U0DA 4UN7G 2AB5A 2I3PA 4AAGA 2CW8A 5AKFA 2EX5A 4UN9A 1G9YA 4Z1XA 3E54A 2VBNB 4AAEA 5E67A 4YHXA 5AKNA 4UN8G 2O7MA 1JVAA 1VDEA 3MXBA 2VBJB 3QQYA 4Z20A 5AK9A 2VBOB 3HYIA 1N3EA 2VS8A 4UNCA 1LWTA 1DFAA 1G9ZA 1B24A 3MISA 3MX9A 2VBLB 5E5OA 3KO2A 3FD2A 4Z1ZA 1BP7A 2I3QA 2XE0A 1AF5A 1EF0A 2VBJA 5A0MB 2VBOA 4AAFA 4YITA 4UT0A 4UN9G 4YISA 4UNAA 4LQ0A 4UN7A 1P8KZ 3EH8A 4UNBA 3C0WA 1N3FA 2VBLA 4AADA 3OORA 5A72A 1T9IA 3HYJA 2VBNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OOL A;  5E63 A;  1LWS A;  5AKM A;  3C0X A;  4LOX A;  2FLD A;  2QOJ Z;  1U0C A;  5A78 A;  3MXA A;  1T9J A;  4UN8 A;  2DCH X;  1R7M A;  1M5X A;  3MIP A;  4D6N A;  2VS7 A;  2CW7 A;  5A74 A;  4AAB A;  5A0W A;  4D6O A;  4AQU A;  4EFJ A;  2XE0 B;  1DQ3 A;  3R7P A;  5A77 A;  3UVF A;  4AQX A;  1UM2 A;  5A0M A;  5E5S A;  3MXB B;  1MOW A;  1U0D A;  4UN7 G;  2AB5 A;  2I3P A;  4AAG A;  2CW8 A;  5AKF A;  2EX5 A;  4UN9 A;  1G9Y A;  4Z1X A;  3E54 A;  2VBN B;  4AAE A;  5E67 A;  4YHX A;  5AKN A;  4UN8 G;  2O7M A;  1JVA A;  1VDE A;  3MXB A;  2VBJ B;  3QQY A;  4Z20 A;  5AK9 A;  2VBO B;  3HYI A;  1N3E A;  2VS8 A;  4UNC A;  1LWT A;  1DFA A;  1G9Z A;  1B24 A;  3MIS A;  3MX9 A;  2VBL B;  5E5O A;  3KO2 A;  3FD2 A;  4Z1Z A;  1BP7 A;  2I3Q A;  2XE0 A;  1AF5 A;  1EF0 A;  2VBJ A;  5A0M B;  2VBO A;  4AAF A;  4YIT A;  4UT0 A;  4UN9 G;  4YIS A;  4UNA A;  4LQ0 A;  4UN7 A;  1P8K Z;  3EH8 A;  4UNB A;  3C0W A;  1N3F A;  2VBL A;  4AAD A;  3OOR A;  5A72 A;  1T9I A;  3HYJ A;  2VBN A; 
#chains in the Genus database with same CATH topology
 3OOL A;  5E63 A;  1LWS A;  5AKM A;  3C0X A;  4LOX A;  2FLD A;  2QOJ Z;  1U0C A;  5A78 A;  3MXA A;  1T9J A;  4UN8 A;  2DCH X;  1R7M A;  1M5X A;  3MIP A;  4D6N A;  2VS7 A;  2CW7 A;  2F4L A;  5A74 A;  4AAB A;  5A0W A;  4D6O A;  4AQU A;  4EFJ A;  2XE0 B;  1DQ3 A;  3R7P A;  5A77 A;  3UVF A;  4AQX A;  1UM2 A;  5A0M A;  5E5S A;  3MXB B;  1MOW A;  1U0D A;  4UN7 G;  2AB5 A;  2I3P A;  4AAG A;  2CW8 A;  5AKF A;  2EX5 A;  4UN9 A;  1G9Y A;  4Z1X A;  3E54 A;  2VBN B;  4AAE A;  5E67 A;  4KZS A;  4YHX A;  5AKN A;  4UN8 G;  2O7M A;  1JVA A;  1VDE A;  3MXB A;  2VBJ B;  3QQY A;  4Z20 A;  5AK9 A;  2VBO B;  3HYI A;  1N3E A;  2VS8 A;  4UNC A;  1LWT A;  1DFA A;  1G9Z A;  1B24 A;  3MIS A;  3MX9 A;  2VBL B;  5E5O A;  3KO2 A;  3FD2 A;  4Z1Z A;  1BP7 A;  2I3Q A;  2XE0 A;  1AF5 A;  1EF0 A;  2VBJ A;  5A0M B;  2VBO A;  4AAF A;  4YIT A;  4UT0 A;  4UN9 G;  4YIS A;  4UNA A;  4LQ0 A;  4UN7 A;  1P8K Z;  3EH8 A;  4UNB A;  3C0W A;  1N3F A;  2VBL A;  4AAD A;  3OOR A;  5A72 A;  1T9I A;  3HYJ A;  2VBN A; 
#chains in the Genus database with same CATH homology
 3OOL A;  5E63 A;  1LWS A;  5AKM A;  3C0X A;  4LOX A;  2FLD A;  2QOJ Z;  1U0C A;  5A78 A;  3MXA A;  1T9J A;  4UN8 A;  2DCH X;  1R7M A;  1M5X A;  3MIP A;  4D6N A;  2VS7 A;  2CW7 A;  5A74 A;  4AAB A;  5A0W A;  4D6O A;  4AQU A;  4EFJ A;  2XE0 B;  1DQ3 A;  3R7P A;  5A77 A;  3UVF A;  4AQX A;  1UM2 A;  5A0M A;  5E5S A;  3MXB B;  1MOW A;  1U0D A;  4UN7 G;  2AB5 A;  2I3P A;  4AAG A;  2CW8 A;  5AKF A;  2EX5 A;  4UN9 A;  1G9Y A;  4Z1X A;  3E54 A;  2VBN B;  4AAE A;  5E67 A;  4YHX A;  5AKN A;  4UN8 G;  2O7M A;  1JVA A;  1VDE A;  3MXB A;  2VBJ B;  3QQY A;  4Z20 A;  5AK9 A;  2VBO B;  3HYI A;  1N3E A;  2VS8 A;  4UNC A;  1LWT A;  1DFA A;  1G9Z A;  1B24 A;  3MIS A;  3MX9 A;  2VBL B;  5E5O A;  3KO2 A;  3FD2 A;  4Z1Z A;  1BP7 A;  2I3Q A;  2XE0 A;  1AF5 A;  1EF0 A;  2VBJ A;  5A0M B;  2VBO A;  4AAF A;  4YIT A;  4UT0 A;  4UN9 G;  4YIS A;  4UNA A;  4LQ0 A;  4UN7 A;  1P8K Z;  3EH8 A;  4UNB A;  3C0W A;  1N3F A;  2VBL A;  4AAD A;  3OOR A;  5A72 A;  1T9I A;  3HYJ A;  2VBN A; 
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