2VS7A

The crystal structure of i-dmoi in complex with dna and ca
Total Genus 53
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
179
structure length
179
Chain Sequence
NENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSHL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Dna binding protein
source organism Desulfurococcus mobilis
publication title Crystal Structure of I-Dmoi in Complex with its Target DNA Provides New Insights Into Meganuclease Engineering.
pubmed doi rcsb
molecule keywords HOMING ENDONUCLEASE I-DMOI
total genus 53
structure length 179
sequence length 179
chains with identical sequence D, G
ec nomenclature ec 3.1.-.-:
pdb deposition date 2008-04-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14528 LAGLIDADG_3 LAGLIDADG-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 2vs7A01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 2vs7A02
1T9IA 5AKFA 4Z1XA 4LQ0A 4UT0A 2CW8A 5A0MA 1G9ZA 1DQ3A 4D6NA 3EH8A 2QOJZ 1G9YA 1N3FA 5A0WA 5AK9A 2I3PA 2EX5A 1U0DA 2I3QA 4D6OA 5E67A 3C0WA 3MISA 1P8KZ 1M5XA 3KO2A 4UN8G 1BP7A 2VBLB 1U0CA 4AQUA 5A74A 5AKNA 1N3EA 4UNBA 1UM2A 2O7MA 3HYJA 5E5OA 1R7MA 2CW7A 1DFAA 5A72A 4UNAA 4AAFA 2VS7A 2DCHX 2VBJB 5E63A 3MXAA 4YISA 1LWTA 3E54A 2XE0B 3OORA 4Z20A 2VBNB 2FLDA 1B24A 5A77A 3OOLA 3C0XA 2VBLA 4UN7G 4YHXA 4AAEA 4AADA 4EFJA 4UNCA 1T9JA 4AQXA 3UVFA 3R7PA 1JVAA 1EF0A 3MXBB 3FD2A 4AABA 3QQYA 4LOXA 2VBJA 4UN9G 2VBOB 1LWSA 5AKMA 2VS8A 3HYIA 2XE0A 4UN8A 5A0MB 2VBNA 4AAGA 5E5SA 5A78A 4UN7A 4Z1ZA 3MIPA 1AF5A 1VDEA 1MOWA 2AB5A 3MXBA 3MX9A 4UN9A 2VBOA 4YITA
chains in the Genus database with same CATH superfamily
1T9IA 5AKFA 4Z1XA 4LQ0A 4UT0A 2CW8A 5A0MA 1G9ZA 1DQ3A 4D6NA 3EH8A 2QOJZ 1G9YA 1N3FA 5A0WA 5AK9A 2I3PA 2EX5A 1U0DA 2I3QA 4D6OA 5E67A 3C0WA 3MISA 1P8KZ 1M5XA 3KO2A 4UN8G 4KZSA 1BP7A 2VBLB 1U0CA 4AQUA 5A74A 5AKNA 1N3EA 4UNBA 1UM2A 2O7MA 3HYJA 5E5OA 1R7MA 2CW7A 1DFAA 5A72A 4UNAA 4AAFA 2VS7A 2DCHX 2VBJB 5E63A 3MXAA 4YISA 1LWTA 3E54A 2XE0B 3OORA 4Z20A 2VBNB 2FLDA 1B24A 5A77A 3OOLA 3C0XA 2VBLA 4UN7G 4YHXA 4AAEA 4AADA 4EFJA 4UNCA 1T9JA 4AQXA 3UVFA 3R7PA 1JVAA 1EF0A 3MXBB 3FD2A 4AABA 3QQYA 4LOXA 2VBJA 4UN9G 2VBOB 1LWSA 5AKMA 2F4LA 2VS8A 3HYIA 2XE0A 4UN8A 5A0MB 2VBNA 4AAGA 5E5SA 5A78A 4UN7A 4Z1ZA 3MIPA 1AF5A 1VDEA 1MOWA 2AB5A 3MXBA 3MX9A 4UN9A 2VBOA 4YITA
chains in the Genus database with same CATH topology
1T9IA 5AKFA 4Z1XA 4LQ0A 4UT0A 2CW8A 5A0MA 1G9ZA 1DQ3A 4D6NA 3EH8A 2QOJZ 1G9YA 1N3FA 5A0WA 5AK9A 2I3PA 2EX5A 1U0DA 2I3QA 4D6OA 5E67A 3C0WA 3MISA 1P8KZ 1M5XA 3KO2A 4UN8G 1BP7A 2VBLB 1U0CA 4AQUA 5A74A 5AKNA 1N3EA 4UNBA 1UM2A 2O7MA 3HYJA 5E5OA 1R7MA 2CW7A 1DFAA 5A72A 4UNAA 4AAFA 2VS7A 2DCHX 2VBJB 5E63A 3MXAA 4YISA 1LWTA 3E54A 2XE0B 3OORA 4Z20A 2VBNB 2FLDA 1B24A 5A77A 3OOLA 3C0XA 2VBLA 4UN7G 4YHXA 4AAEA 4AADA 4EFJA 4UNCA 1T9JA 4AQXA 3UVFA 3R7PA 1JVAA 1EF0A 3MXBB 3FD2A 4AABA 3QQYA 4LOXA 2VBJA 4UN9G 2VBOB 1LWSA 5AKMA 2VS8A 3HYIA 2XE0A 4UN8A 5A0MB 2VBNA 4AAGA 5E5SA 5A78A 4UN7A 4Z1ZA 3MIPA 1AF5A 1VDEA 1MOWA 2AB5A 3MXBA 3MX9A 4UN9A 2VBOA 4YITA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1T9I A;  5AKF A;  4Z1X A;  4LQ0 A;  4UT0 A;  2CW8 A;  5A0M A;  1G9Z A;  1DQ3 A;  4D6N A;  3EH8 A;  2QOJ Z;  1G9Y A;  1N3F A;  5A0W A;  5AK9 A;  2I3P A;  2EX5 A;  1U0D A;  2I3Q A;  4D6O A;  5E67 A;  3C0W A;  3MIS A;  1P8K Z;  1M5X A;  3KO2 A;  4UN8 G;  1BP7 A;  2VBL B;  1U0C A;  4AQU A;  5A74 A;  5AKN A;  1N3E A;  4UNB A;  1UM2 A;  2O7M A;  3HYJ A;  5E5O A;  1R7M A;  2CW7 A;  1DFA A;  5A72 A;  4UNA A;  4AAF A;  2VS7 A;  2DCH X;  2VBJ B;  5E63 A;  3MXA A;  4YIS A;  1LWT A;  3E54 A;  2XE0 B;  3OOR A;  4Z20 A;  2VBN B;  2FLD A;  1B24 A;  5A77 A;  3OOL A;  3C0X A;  2VBL A;  4UN7 G;  4YHX A;  4AAE A;  4AAD A;  4EFJ A;  4UNC A;  1T9J A;  4AQX A;  3UVF A;  3R7P A;  1JVA A;  1EF0 A;  3MXB B;  3FD2 A;  4AAB A;  3QQY A;  4LOX A;  2VBJ A;  4UN9 G;  2VBO B;  1LWS A;  5AKM A;  2VS8 A;  3HYI A;  2XE0 A;  4UN8 A;  5A0M B;  2VBN A;  4AAG A;  5E5S A;  5A78 A;  4UN7 A;  4Z1Z A;  3MIP A;  1AF5 A;  1VDE A;  1MOW A;  2AB5 A;  3MXB A;  3MX9 A;  4UN9 A;  2VBO A;  4YIT A; 
#chains in the Genus database with same CATH topology
 1T9I A;  5AKF A;  4Z1X A;  4LQ0 A;  4UT0 A;  2CW8 A;  5A0M A;  1G9Z A;  1DQ3 A;  4D6N A;  3EH8 A;  2QOJ Z;  1G9Y A;  1N3F A;  5A0W A;  5AK9 A;  2I3P A;  2EX5 A;  1U0D A;  2I3Q A;  4D6O A;  5E67 A;  3C0W A;  3MIS A;  1P8K Z;  1M5X A;  3KO2 A;  4UN8 G;  4KZS A;  1BP7 A;  2VBL B;  1U0C A;  4AQU A;  5A74 A;  5AKN A;  1N3E A;  4UNB A;  1UM2 A;  2O7M A;  3HYJ A;  5E5O A;  1R7M A;  2CW7 A;  1DFA A;  5A72 A;  4UNA A;  4AAF A;  2VS7 A;  2DCH X;  2VBJ B;  5E63 A;  3MXA A;  4YIS A;  1LWT A;  3E54 A;  2XE0 B;  3OOR A;  4Z20 A;  2VBN B;  2FLD A;  1B24 A;  5A77 A;  3OOL A;  3C0X A;  2VBL A;  4UN7 G;  4YHX A;  4AAE A;  4AAD A;  4EFJ A;  4UNC A;  1T9J A;  4AQX A;  3UVF A;  3R7P A;  1JVA A;  1EF0 A;  3MXB B;  3FD2 A;  4AAB A;  3QQY A;  4LOX A;  2VBJ A;  4UN9 G;  2VBO B;  1LWS A;  5AKM A;  2F4L A;  2VS8 A;  3HYI A;  2XE0 A;  4UN8 A;  5A0M B;  2VBN A;  4AAG A;  5E5S A;  5A78 A;  4UN7 A;  4Z1Z A;  3MIP A;  1AF5 A;  1VDE A;  1MOW A;  2AB5 A;  3MXB A;  3MX9 A;  4UN9 A;  2VBO A;  4YIT A; 
#chains in the Genus database with same CATH homology
 1T9I A;  5AKF A;  4Z1X A;  4LQ0 A;  4UT0 A;  2CW8 A;  5A0M A;  1G9Z A;  1DQ3 A;  4D6N A;  3EH8 A;  2QOJ Z;  1G9Y A;  1N3F A;  5A0W A;  5AK9 A;  2I3P A;  2EX5 A;  1U0D A;  2I3Q A;  4D6O A;  5E67 A;  3C0W A;  3MIS A;  1P8K Z;  1M5X A;  3KO2 A;  4UN8 G;  1BP7 A;  2VBL B;  1U0C A;  4AQU A;  5A74 A;  5AKN A;  1N3E A;  4UNB A;  1UM2 A;  2O7M A;  3HYJ A;  5E5O A;  1R7M A;  2CW7 A;  1DFA A;  5A72 A;  4UNA A;  4AAF A;  2VS7 A;  2DCH X;  2VBJ B;  5E63 A;  3MXA A;  4YIS A;  1LWT A;  3E54 A;  2XE0 B;  3OOR A;  4Z20 A;  2VBN B;  2FLD A;  1B24 A;  5A77 A;  3OOL A;  3C0X A;  2VBL A;  4UN7 G;  4YHX A;  4AAE A;  4AAD A;  4EFJ A;  4UNC A;  1T9J A;  4AQX A;  3UVF A;  3R7P A;  1JVA A;  1EF0 A;  3MXB B;  3FD2 A;  4AAB A;  3QQY A;  4LOX A;  2VBJ A;  4UN9 G;  2VBO B;  1LWS A;  5AKM A;  2VS8 A;  3HYI A;  2XE0 A;  4UN8 A;  5A0M B;  2VBN A;  4AAG A;  5E5S A;  5A78 A;  4UN7 A;  4Z1Z A;  3MIP A;  1AF5 A;  1VDE A;  1MOW A;  2AB5 A;  3MXB A;  3MX9 A;  4UN9 A;  2VBO A;  4YIT A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...