2WCWA

1.6a resolution structure of archaeoglobus fulgidus hjc, a holliday junction resolvase from an archaeal hyperthermophile
Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
126
structure length
126
Chain Sequence
KGTRFERDLLVELWKAGFAAIRVAGAGVSPFPCPDIVAGNGRTYLAIEVKMRKELPLYLSADEVEQLVTFARGFGAEAYVALKLPRAAWRFFPVQMLERTEKNFKIDESVYPLGLEIAEVAGKFFQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH1 (4-19)TI1 (87-90)S2 (39-42)EMPTYS1 (22-25)TII1 (26-29)TIV1 (28-31)AH2 (64-77)TIV3 (43-46)S3 (47-54)S4 (60-63)S8 (106-109)TIV4 (55-58)S6 (93-96)S5 (80-86)3H1 (97-99)TI2 (103-106)S7 (101-102)TI3 (110-113)3H2 (114-116)AH3 (120-125)3H3 (126-128)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Archaeoglobus fulgidus
publication title 1.6 A Resolution Structure of Archaeoglobus Fulgidus Hjc, a Holliday Junction Resolvase from an Archaeal Hyperthermophile
rcsb
molecule keywords HJC
total genus 32
structure length 126
sequence length 126
chains with identical sequence B, C, D
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2009-03-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01870 Hjc Archaeal holliday junction resolvase (hjc)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 2wcwA00
2WCZA 2WJ0A 1HH1A 2WIWA 1Y88A 1R11A 2INBA 1RZNA 1OB9A 2ZYZA 4QBLA 3P1YA 3IEYA 4QBNA 3FOVA 4TKKA 2CV8A 2GJWA 2ZYZB 1RLVA 3P1ZA 1F1ZA 1R0VA 1OB8A 1XMXA 1ZP7A 2OSTA 1T0FA 1A79A 1GEFA 3AJVA 4QBOA 1Y1OA 3P1ZB 2FCOA 1IPIA 5FDKA 2GW6A 2WCWA 2WIZA 3AJVB 2OKFA 4TKDA 3DNXA 2VLDA 2EO0A
chains in the Genus database with same CATH superfamily
2FKCA 2WCZA 2WJ0A 2FKHB 1HH1A 4G6UA 1Y88A 2WIWA 1R11A 2INBA 1RZNA 1OB9A 2ZYZA 4QBLA 4DAPA 2OSTA 3BT7A 3P1YA 1UWVA 2DBSA 3IEYA 3FOVA 4QBNA 4TKKA 4EV1A 2CV8A 2GJWA 2W8MA 2IXSA 2ZYZB 1RLVA 3P1ZA 1F1ZA 1R0VA 1OB8A 1XMXA 1ZP7A 3IEYB 1T0FA 1YNMA 4LQEA 1A79A 1GEFA 4ZQUA 3AJVA 4QBOA 4DA2A 2FLCA 1Y1OA 4G6VA 2JJQA 3P1ZB 2CZRA 2FL3A 1IPIA 2FCOA 5FDKA 2GW6A 2VS1A 2WCWA 2WIZA 2Z0RA 2OKFA 3AJVB 3IF0X 3DNXA 4TKDA 4E6ZA 4DAVA 2VLDA 2EO0A 2BH2A
chains in the Genus database with same CATH topology
2FKCA 2WCZA 2WJ0A 2FKHB 1HH1A 4G6UA 1Y88A 2WIWA 1R11A 2INBA 1RZNA 1OB9A 2ZYZA 4QBLA 4DAPA 2OSTA 3BT7A 3P1YA 1UWVA 2DBSA 3IEYA 3FOVA 4QBNA 4TKKA 4EV1A 2CV8A 2GJWA 2W8MA 2IXSA 2ZYZB 1RLVA 3P1ZA 1F1ZA 1R0VA 1OB8A 1XMXA 1ZP7A 3IEYB 1T0FA 1YNMA 4LQEA 1A79A 1GEFA 4ZQUA 3AJVA 4QBOA 4DA2A 2FLCA 1Y1OA 4G6VA 2JJQA 3P1ZB 2CZRA 2FL3A 1IPIA 2FCOA 5FDKA 2GW6A 2VS1A 2WCWA 2WIZA 2Z0RA 2OKFA 3AJVB 3IF0X 3DNXA 4TKDA 4E6ZA 4DAVA 2VLDA 2EO0A 2BH2A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2WCZ A;  2WJ0 A;  1HH1 A;  2WIW A;  1Y88 A;  1R11 A;  2INB A;  1RZN A;  1OB9 A;  2ZYZ A;  4QBL A;  3P1Y A;  3IEY A;  4QBN A;  3FOV A;  4TKK A;  2CV8 A;  2GJW A;  2ZYZ B;  1RLV A;  3P1Z A;  1F1Z A;  1R0V A;  1OB8 A;  1XMX A;  1ZP7 A;  2OST A;  1T0F A;  1A79 A;  1GEF A;  3AJV A;  4QBO A;  1Y1O A;  3P1Z B;  2FCO A;  1IPI A;  5FDK A;  2GW6 A;  2WCW A;  2WIZ A;  3AJV B;  2OKF A;  4TKD A;  3DNX A;  2VLD A;  2EO0 A; 
#chains in the Genus database with same CATH topology
 2FKC A;  2WCZ A;  2WJ0 A;  2FKH B;  1HH1 A;  4G6U A;  1Y88 A;  2WIW A;  1R11 A;  2INB A;  1RZN A;  1OB9 A;  2ZYZ A;  4QBL A;  4DAP A;  2OST A;  3BT7 A;  3P1Y A;  1UWV A;  2DBS A;  3IEY A;  3FOV A;  4QBN A;  4TKK A;  4EV1 A;  2CV8 A;  2GJW A;  2W8M A;  2IXS A;  2ZYZ B;  1RLV A;  3P1Z A;  1F1Z A;  1R0V A;  1OB8 A;  1XMX A;  1ZP7 A;  3IEY B;  1T0F A;  1YNM A;  4LQE A;  1A79 A;  1GEF A;  4ZQU A;  3AJV A;  4QBO A;  4DA2 A;  2FLC A;  1Y1O A;  4G6V A;  2JJQ A;  3P1Z B;  2CZR A;  2FL3 A;  1IPI A;  2FCO A;  5FDK A;  2GW6 A;  2VS1 A;  2WCW A;  2WIZ A;  2Z0R A;  2OKF A;  3AJV B;  3IF0 X;  3DNX A;  4TKD A;  4E6Z A;  4DAV A;  2VLD A;  2EO0 A;  2BH2 A; 
#chains in the Genus database with same CATH homology
 2FKC A;  2WCZ A;  2WJ0 A;  2FKH B;  1HH1 A;  4G6U A;  1Y88 A;  2WIW A;  1R11 A;  2INB A;  1RZN A;  1OB9 A;  2ZYZ A;  4QBL A;  4DAP A;  2OST A;  3BT7 A;  3P1Y A;  1UWV A;  2DBS A;  3IEY A;  3FOV A;  4QBN A;  4TKK A;  4EV1 A;  2CV8 A;  2GJW A;  2W8M A;  2IXS A;  2ZYZ B;  1RLV A;  3P1Z A;  1F1Z A;  1R0V A;  1OB8 A;  1XMX A;  1ZP7 A;  3IEY B;  1T0F A;  1YNM A;  4LQE A;  1A79 A;  1GEF A;  4ZQU A;  3AJV A;  4QBO A;  4DA2 A;  2FLC A;  1Y1O A;  4G6V A;  2JJQ A;  3P1Z B;  2CZR A;  2FL3 A;  1IPI A;  2FCO A;  5FDK A;  2GW6 A;  2VS1 A;  2WCW A;  2WIZ A;  2Z0R A;  2OKF A;  3AJV B;  3IF0 X;  3DNX A;  4TKD A;  4E6Z A;  4DAV A;  2VLD A;  2EO0 A;  2BH2 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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