2XSV | Genus

Total Genus 96

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	96
sequence length	309
structure length	309
Chain Sequence	HHHHNRQQIDALVKQMNVDTAKGPVDERIQQVVVRLLGDLFQAIEDLDIQPSEVWKGLEYLTDAGQANELGALAAGLGLEHYLDLRADEADAKAGITGGTPRTIEGPLYVAGAPESVGFARMDDGSESDKVDTLIIEGTVTDTEGNIIEGAKVEVWHANSLGNYSFFDKSQSDFNLRRTILTDVNGKYVALTTMPVGYGCPPEGTTQALLNKLGRHGNRPSHVHYFVSAPGYRKLTTQFNIEGDEYLWDDFAFATRDGLVATATDVTDEAEIARRELDKPFKHITFNVELVKEAEAAPSSEVERRRASA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	X-Ray Crystallography, Mass Spectrometry and Single Crystal Microspectrophotometry: A Multidisciplinary Characterization of Catechol 1,2 Dioxygenase. pubmed doi rcsb
molecule keywords	CATECHOL 1,2 DIOXYGENASE
molecule tags	Oxidoreductase
source organism	Acinetobacter radioresistens
total genus	96
structure length	309
sequence length	309
ec nomenclature
pdb deposition date	2010-09-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00775	Dioxygenase_C	Dioxygenase
A	PF04444	Dioxygenase_N	Catechol dioxygenase N terminus

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.130.10	Mainly Beta	Sandwich	Protocatechuate 3,4-Dioxygenase, subunit A	Aromatic compound dioxygenase	2xsvA00

4WHQA 3I4YA 3HHXA 1YKKA 2BUMA 3MFLA 2AZQA 1DMHA 2BUXA 2BUUA 3PCBA 3PCIM 3O6JA 3O5UA 1EOAA 3PCDA 3LMXA 1EOBB 3PCLA 1YKNB 2BV0A 3T67A 3LKTA 3MV4M 3TH1A 2BURA 3O6RA 3PCEA 1EOBA 3I4VA 4WHOD 3PCCM 3LXVM 1YKMA 3PCNM 2BUVA 1YKPB 3PCMM 1EO2A 3LMXM 1DLTA 4WHOB 4WHRB 4WHSD 3T63M 3PCHM 3PCKM 3PCJA 3PCGM 2PCDA 3PCAA 1YKPA 4WHOA 3MV6A 4WHSB 2XSUA 3MI1A 2BUWB 1EO9B 1S9AA 3HJ8A 4WHPD 2BUZB 4WHSA 3N9TA 3MFLM 1YKNA 4WHRF 3MI5A 2BUTB 3I51A 3PCBM 1YKLB 3PCFA 3HJQA 1TMXA 4WHPB 3HHYA 3PCDM 1EOCB 2BUQB 2BUTA 3PCLM 3HKPA 3T67M 2BOYA 3PCIA 4WHPA 3HGIA 3LKTM 1YKOB 2BUYB 4WHRA 2BUQA 4WHQB 4ILTA 1DLMA 3PCEM 4ILVA 3PCFM 1DLQA 3HJSA 1EOAB 3MV4A 2BUWA 3PCCA 1EO9A 3LXVA 3PCJM 2XSVA 3PCNA 2PCDM 3PCAM 2BUZA 2BV0B 3O32A 3PCMA 3MV6M 2BURB 3T63A 1YKLA 3MI1M 3PCHA 3PCKA 1YKMB 3PCGA 2BUVB 1EOCA 5TD3A 2XSRA 1YKKB 2BUMB 1EO2B 3MI5M 2BUXB 2BUUB 1YKOA 2BUYA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4WHQ A;  3I4Y A;  3HHX A;  1YKK A;  2BUM A;  3MFL A;  2AZQ A;  1DMH A;  2BUX A;  2BUU A;  3PCB A;  3PCI M;  3O6J A;  3O5U A;  1EOA A;  3PCD A;  3LMX A;  1EOB B;  3PCL A;  1YKN B;  2BV0 A;  3T67 A;  3LKT A;  3MV4 M;  3TH1 A;  2BUR A;  3O6R A;  3PCE A;  1EOB A;  3I4V A;  4WHO D;  3PCC M;  3LXV M;  1YKM A;  3PCN M;  2BUV A;  1YKP B;  3PCM M;  1EO2 A;  3LMX M;  1DLT A;  4WHO B;  4WHR B;  4WHS D;  3T63 M;  3PCH M;  3PCK M;  3PCJ A;  3PCG M;  2PCD A;  3PCA A;  1YKP A;  4WHO A;  3MV6 A;  4WHS B;  2XSU A;  3MI1 A;  2BUW B;  1EO9 B;  1S9A A;  3HJ8 A;  4WHP D;  2BUZ B;  4WHS A;  3N9T A;  3MFL M;  1YKN A;  4WHR F;  3MI5 A;  2BUT B;  3I51 A;  3PCB M;  1YKL B;  3PCF A;  3HJQ A;  1TMX A;  4WHP B;  3HHY A;  3PCD M;  1EOC B;  2BUQ B;  2BUT A;  3PCL M;  3HKP A;  3T67 M;  2BOY A;  3PCI A;  4WHP A;  3HGI A;  3LKT M;  1YKO B;  2BUY B;  4WHR A;  2BUQ A;  4WHQ B;  4ILT A;  1DLM A;  3PCE M;  4ILV A;  3PCF M;  1DLQ A;  3HJS A;  1EOA B;  3MV4 A;  2BUW A;  3PCC A;  1EO9 A;  3LXV A;  3PCJ M;  2XSV A;  3PCN A;  2PCD M;  3PCA M;  2BUZ A;  2BV0 B;  3O32 A;  3PCM A;  3MV6 M;  2BUR B;  3T63 A;  1YKL A;  3MI1 M;  3PCH A;  3PCK A;  1YKM B;  3PCG A;  2BUV B;  1EOC A;  5TD3 A;  2XSR A;  1YKK B;  2BUM B;  1EO2 B;  3MI5 M;  2BUX B;  2BUU B;  1YKO A;  2BUY A; 
#chains in the Genus database with same CATH topology
 4WHQ A;  3I4Y A;  3HHX A;  1YKK A;  2BUM A;  3MFL A;  2AZQ A;  1DMH A;  2BUX A;  2BUU A;  3PCB A;  3PCI M;  3O6J A;  3O5U A;  1EOA A;  3PCD A;  3LMX A;  1EOB B;  3PCL A;  1YKN B;  2BV0 A;  3T67 A;  3LKT A;  3MV4 M;  3TH1 A;  2BUR A;  3O6R A;  3PCE A;  1EOB A;  3I4V A;  4WHO D;  3PCC M;  3LXV M;  1YKM A;  3PCN M;  2BUV A;  1YKP B;  3PCM M;  1EO2 A;  3LMX M;  1DLT A;  4WHO B;  4WHR B;  4WHS D;  3T63 M;  3PCH M;  3PCK M;  3PCJ A;  3PCG M;  2PCD A;  3PCA A;  1YKP A;  4WHO A;  3MV6 A;  4WHS B;  2XSU A;  3MI1 A;  2BUW B;  1EO9 B;  1S9A A;  3HJ8 A;  4WHP D;  2BUZ B;  4WHS A;  3N9T A;  3MFL M;  1YKN A;  4WHR F;  3MI5 A;  2BUT B;  3I51 A;  3PCB M;  1YKL B;  3PCF A;  3HJQ A;  1TMX A;  4WHP B;  3HHY A;  3PCD M;  1EOC B;  2BUQ B;  2BUT A;  3PCL M;  3HKP A;  3T67 M;  2BOY A;  3PCI A;  4WHP A;  3HGI A;  3LKT M;  1YKO B;  2BUY B;  4WHR A;  2BUQ A;  4WHQ B;  4ILT A;  1DLM A;  3PCE M;  4ILV A;  3PCF M;  1DLQ A;  3HJS A;  1EOA B;  3MV4 A;  2BUW A;  3PCC A;  1EO9 A;  3LXV A;  3PCJ M;  2XSV A;  3PCN A;  2PCD M;  3PCA M;  2BUZ A;  2BV0 B;  3O32 A;  3PCM A;  3MV6 M;  2BUR B;  3T63 A;  1YKL A;  3MI1 M;  3PCH A;  3PCK A;  1YKM B;  3PCG A;  2BUV B;  1EOC A;  5TD3 A;  2XSR A;  1YKK B;  2BUM B;  1EO2 B;  3MI5 M;  2BUX B;  2BUU B;  1YKO A;  2BUY A; 
#chains in the Genus database with same CATH homology
 4WHQ A;  3I4Y A;  3HHX A;  1YKK A;  2BUM A;  3MFL A;  2AZQ A;  1DMH A;  2BUX A;  2BUU A;  3PCB A;  3PCI M;  3O6J A;  3O5U A;  1EOA A;  3PCD A;  3LMX A;  1EOB B;  3PCL A;  1YKN B;  2BV0 A;  3T67 A;  3LKT A;  3MV4 M;  3TH1 A;  2BUR A;  3O6R A;  3PCE A;  1EOB A;  3I4V A;  4WHO D;  3PCC M;  3LXV M;  1YKM A;  3PCN M;  2BUV A;  1YKP B;  3PCM M;  1EO2 A;  3LMX M;  1DLT A;  4WHO B;  4WHR B;  4WHS D;  3T63 M;  3PCH M;  3PCK M;  3PCJ A;  3PCG M;  2PCD A;  3PCA A;  1YKP A;  4WHO A;  3MV6 A;  4WHS B;  2XSU A;  3MI1 A;  2BUW B;  1EO9 B;  1S9A A;  3HJ8 A;  4WHP D;  2BUZ B;  4WHS A;  3N9T A;  3MFL M;  1YKN A;  4WHR F;  3MI5 A;  2BUT B;  3I51 A;  3PCB M;  1YKL B;  3PCF A;  3HJQ A;  1TMX A;  4WHP B;  3HHY A;  3PCD M;  1EOC B;  2BUQ B;  2BUT A;  3PCL M;  3HKP A;  3T67 M;  2BOY A;  3PCI A;  4WHP A;  3HGI A;  3LKT M;  1YKO B;  2BUY B;  4WHR A;  2BUQ A;  4WHQ B;  4ILT A;  1DLM A;  3PCE M;  4ILV A;  3PCF M;  1DLQ A;  3HJS A;  1EOA B;  3MV4 A;  2BUW A;  3PCC A;  1EO9 A;  3LXV A;  3PCJ M;  2XSV A;  3PCN A;  2PCD M;  3PCA M;  2BUZ A;  2BV0 B;  3O32 A;  3PCM A;  3MV6 M;  2BUR B;  3T63 A;  1YKL A;  3MI1 M;  3PCH A;  3PCK A;  1YKM B;  3PCG A;  2BUV B;  1EOC A;  5TD3 A;  2XSR A;  1YKK B;  2BUM B;  1EO2 B;  3MI5 M;  2BUX B;  2BUU B;  1YKO A;  2BUY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2XSVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations