3FD2A

Crystal structure of mmsoi/dna complex with calcium
Total Genus 104

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
366
structure length
338
Chain Sequence
NTLQPTEAAYIAGFLDGDGSIYAKLIPRPDYKDIKYQVSLAISFIQRKDKFPYLQDIYDQLGKRGNLRKDRGDGIADYTIIGSTHLSIILPDLVPYLRIKKKQANRILHIINLYPQAQKNPSKFLDLVKIVDDVQNLNKRADELKSTNYDRLLEEFLKAGKIESSPTGSGSGSKKNTLQPTEAAYIAGFLDGDGSIYAKLIPRPDYKDIKYQVSLAISFIQRKDKFPYLQDIYDQLGKRGNLRKDRGDGIADYTIIGSTHLSIILPDLVPYLRIKKKQANRILHIINLYPQAQKNPSKFLDLVKIVDDVQNLNKRADELKSTNYDRLLEEFLKAGKIE
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (9-22)AH5 (125-142)S1 (23-31)TIV3 (36-39)AH6 (152-163)TIV1 (32-35)TIV2 (35-38)AH4 (104-122)S2 (40-51)TVIII1 (72-75)3H1 (52-54)AH2 (55-65)S7 (273-275)TIV5 (75-78)S4 (79-85)TIV4 (65-68)S3 (70-72)EMPTYAH3 (87-97)3H2 (98-100)TIV7 (101-104)TI1 (144-147)TVIII2 (164-167)O2 (174-176)TIV8 (167-170)S6 (243-254)3H3 (255-257)AH8 (258-268)TIV11 (268-271)TVIII3 (275-278)TIV12 (277-280)TIV13 (278-281)S8 (282-288)AH10 (307-320)AH9 (290-300)TIV14 (304-307)3H4 (301-303)TI2 (321-324)TI5 (324-327)TIV15 (320-323)AH11 (328-345)TI3 (322-325)TI4 (323-326)AH7 (212-225)S5 (226-234)TIV10 (238-241)O1 (5-7)TIV9 (235-238)Updating...
connected with : NaN
molecule tags Hydrolase/dna
source organism Monomastix sp. (strain oke-1)
publication title Generation of single-chain LAGLIDADG homing endonucleases from native homodimeric precursor proteins.
pubmed doi rcsb
molecule keywords Site-specific DNA endonuclease I-MsoI
total genus 104
structure length 338
sequence length 366
ec nomenclature ec 3.1.-.-:
pdb deposition date 2008-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 3fd2A02
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 3fd2A01
3HYIA 3FD2A 1VDEA 5E5OA 4LOXA 4AADA 4UN8G 2VBJB 4UT0A 2VBJA 1UM2A 3QQYA 4YITA 5A77A 1U0DA 4UN9G 4AAGA 1M5XA 3E54A 3OORA 4D6OA 2QOJZ 4D6NA 5A0MB 3MXAA 5A0MA 2EX5A 4YISA 4AAFA 4EFJA 5AK9A 4LQ0A 2VS7A 3KO2A 1U0CA 1P8KZ 3C0XA 4AQUA 5A74A 1JVAA 1N3FA 5A72A 4Z1ZA 3R7PA 1G9ZA 2O7MA 4Z1XA 2DCHX 1N3EA 2AB5A 1EF0A 3MXBB 3MXBA 1R7MA 5AKMA 3MISA 5A0WA 2VBNB 3EH8A 2VBNA 4UNAA 4AABA 1BP7A 1B24A 3UVFA 1G9YA 4AAEA 1T9JA 2XE0B 5AKNA 2XE0A 4AQXA 2VBOB 1T9IA 4YHXA 2VBOA 1LWSA 1DFAA 4Z20A 5AKFA 2CW8A 2I3PA 3MIPA 4UNBA 1DQ3A 5E5SA 1LWTA 5A78A 2I3QA 3OOLA 5E67A 2CW7A 4UN8A 5E63A 2VBLB 3HYJA 2VBLA 4UN7G 4UN9A 1MOWA 1AF5A 3MX9A 2FLDA 3C0WA 2VS8A 4UNCA 4UN7A
chains in the Genus database with same CATH superfamily
3HYIA 3FD2A 1VDEA 5E5OA 4LOXA 4AADA 4UN8G 2VBJB 4UT0A 2VBJA 1UM2A 3QQYA 4YITA 5A77A 1U0DA 4UN9G 4AAGA 1M5XA 3E54A 3OORA 4D6OA 2QOJZ 4D6NA 5A0MB 3MXAA 5A0MA 2EX5A 4YISA 4AAFA 4EFJA 5AK9A 4LQ0A 2VS7A 3KO2A 1U0CA 1P8KZ 3C0XA 4AQUA 5A74A 1JVAA 1N3FA 5A72A 4Z1ZA 3R7PA 1G9ZA 2O7MA 4Z1XA 2DCHX 1N3EA 2AB5A 1EF0A 3MXBB 3MXBA 1R7MA 5AKMA 3MISA 5A0WA 2VBNB 3EH8A 2VBNA 4UNAA 4AABA 1BP7A 1B24A 3UVFA 4KZSA 1G9YA 2F4LA 4AAEA 1T9JA 2XE0B 5AKNA 2XE0A 4AQXA 2VBOB 1T9IA 4YHXA 2VBOA 1LWSA 1DFAA 4Z20A 5AKFA 2CW8A 2I3PA 3MIPA 4UNBA 1DQ3A 5E5SA 1LWTA 5A78A 2I3QA 3OOLA 5E67A 2CW7A 4UN8A 5E63A 2VBLB 3HYJA 2VBLA 4UN7G 4UN9A 1MOWA 1AF5A 3MX9A 2FLDA 3C0WA 2VS8A 4UNCA 4UN7A
chains in the Genus database with same CATH topology
3HYIA 3FD2A 1VDEA 5E5OA 4LOXA 4AADA 4UN8G 2VBJB 4UT0A 2VBJA 1UM2A 3QQYA 4YITA 5A77A 1U0DA 4UN9G 4AAGA 1M5XA 3E54A 3OORA 4D6OA 2QOJZ 4D6NA 5A0MB 3MXAA 5A0MA 2EX5A 4YISA 4AAFA 4EFJA 5AK9A 4LQ0A 2VS7A 3KO2A 1U0CA 1P8KZ 3C0XA 4AQUA 5A74A 1JVAA 1N3FA 5A72A 4Z1ZA 3R7PA 1G9ZA 2O7MA 4Z1XA 2DCHX 1N3EA 2AB5A 1EF0A 3MXBB 3MXBA 1R7MA 5AKMA 3MISA 5A0WA 2VBNB 3EH8A 2VBNA 4UNAA 4AABA 1BP7A 1B24A 3UVFA 1G9YA 4AAEA 1T9JA 2XE0B 5AKNA 2XE0A 4AQXA 2VBOB 1T9IA 4YHXA 2VBOA 1LWSA 1DFAA 4Z20A 5AKFA 2CW8A 2I3PA 3MIPA 4UNBA 1DQ3A 5E5SA 1LWTA 5A78A 2I3QA 3OOLA 5E67A 2CW7A 4UN8A 5E63A 2VBLB 3HYJA 2VBLA 4UN7G 4UN9A 1MOWA 1AF5A 3MX9A 2FLDA 3C0WA 2VS8A 4UNCA 4UN7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HYI A;  3FD2 A;  1VDE A;  5E5O A;  4LOX A;  4AAD A;  4UN8 G;  2VBJ B;  4UT0 A;  2VBJ A;  1UM2 A;  3QQY A;  4YIT A;  5A77 A;  1U0D A;  4UN9 G;  4AAG A;  1M5X A;  3E54 A;  3OOR A;  4D6O A;  2QOJ Z;  4D6N A;  5A0M B;  3MXA A;  5A0M A;  2EX5 A;  4YIS A;  4AAF A;  4EFJ A;  5AK9 A;  4LQ0 A;  2VS7 A;  3KO2 A;  1U0C A;  1P8K Z;  3C0X A;  4AQU A;  5A74 A;  1JVA A;  1N3F A;  5A72 A;  4Z1Z A;  3R7P A;  1G9Z A;  2O7M A;  4Z1X A;  2DCH X;  1N3E A;  2AB5 A;  1EF0 A;  3MXB B;  3MXB A;  1R7M A;  5AKM A;  3MIS A;  5A0W A;  2VBN B;  3EH8 A;  2VBN A;  4UNA A;  4AAB A;  1BP7 A;  1B24 A;  3UVF A;  1G9Y A;  4AAE A;  1T9J A;  2XE0 B;  5AKN A;  2XE0 A;  4AQX A;  2VBO B;  1T9I A;  4YHX A;  2VBO A;  1LWS A;  1DFA A;  4Z20 A;  5AKF A;  2CW8 A;  2I3P A;  3MIP A;  4UNB A;  1DQ3 A;  5E5S A;  1LWT A;  5A78 A;  2I3Q A;  3OOL A;  5E67 A;  2CW7 A;  4UN8 A;  5E63 A;  2VBL B;  3HYJ A;  2VBL A;  4UN7 G;  4UN9 A;  1MOW A;  1AF5 A;  3MX9 A;  2FLD A;  3C0W A;  2VS8 A;  4UNC A;  4UN7 A; 
#chains in the Genus database with same CATH topology
 3HYI A;  3FD2 A;  1VDE A;  5E5O A;  4LOX A;  4AAD A;  4UN8 G;  2VBJ B;  4UT0 A;  2VBJ A;  1UM2 A;  3QQY A;  4YIT A;  5A77 A;  1U0D A;  4UN9 G;  4AAG A;  1M5X A;  3E54 A;  3OOR A;  4D6O A;  2QOJ Z;  4D6N A;  5A0M B;  3MXA A;  5A0M A;  2EX5 A;  4YIS A;  4AAF A;  4EFJ A;  5AK9 A;  4LQ0 A;  2VS7 A;  3KO2 A;  1U0C A;  1P8K Z;  3C0X A;  4AQU A;  5A74 A;  1JVA A;  1N3F A;  5A72 A;  4Z1Z A;  3R7P A;  1G9Z A;  2O7M A;  4Z1X A;  2DCH X;  1N3E A;  2AB5 A;  1EF0 A;  3MXB B;  3MXB A;  1R7M A;  5AKM A;  3MIS A;  5A0W A;  2VBN B;  3EH8 A;  2VBN A;  4UNA A;  4AAB A;  1BP7 A;  1B24 A;  3UVF A;  4KZS A;  1G9Y A;  2F4L A;  4AAE A;  1T9J A;  2XE0 B;  5AKN A;  2XE0 A;  4AQX A;  2VBO B;  1T9I A;  4YHX A;  2VBO A;  1LWS A;  1DFA A;  4Z20 A;  5AKF A;  2CW8 A;  2I3P A;  3MIP A;  4UNB A;  1DQ3 A;  5E5S A;  1LWT A;  5A78 A;  2I3Q A;  3OOL A;  5E67 A;  2CW7 A;  4UN8 A;  5E63 A;  2VBL B;  3HYJ A;  2VBL A;  4UN7 G;  4UN9 A;  1MOW A;  1AF5 A;  3MX9 A;  2FLD A;  3C0W A;  2VS8 A;  4UNC A;  4UN7 A; 
#chains in the Genus database with same CATH homology
 3HYI A;  3FD2 A;  1VDE A;  5E5O A;  4LOX A;  4AAD A;  4UN8 G;  2VBJ B;  4UT0 A;  2VBJ A;  1UM2 A;  3QQY A;  4YIT A;  5A77 A;  1U0D A;  4UN9 G;  4AAG A;  1M5X A;  3E54 A;  3OOR A;  4D6O A;  2QOJ Z;  4D6N A;  5A0M B;  3MXA A;  5A0M A;  2EX5 A;  4YIS A;  4AAF A;  4EFJ A;  5AK9 A;  4LQ0 A;  2VS7 A;  3KO2 A;  1U0C A;  1P8K Z;  3C0X A;  4AQU A;  5A74 A;  1JVA A;  1N3F A;  5A72 A;  4Z1Z A;  3R7P A;  1G9Z A;  2O7M A;  4Z1X A;  2DCH X;  1N3E A;  2AB5 A;  1EF0 A;  3MXB B;  3MXB A;  1R7M A;  5AKM A;  3MIS A;  5A0W A;  2VBN B;  3EH8 A;  2VBN A;  4UNA A;  4AAB A;  1BP7 A;  1B24 A;  3UVF A;  1G9Y A;  4AAE A;  1T9J A;  2XE0 B;  5AKN A;  2XE0 A;  4AQX A;  2VBO B;  1T9I A;  4YHX A;  2VBO A;  1LWS A;  1DFA A;  4Z20 A;  5AKF A;  2CW8 A;  2I3P A;  3MIP A;  4UNB A;  1DQ3 A;  5E5S A;  1LWT A;  5A78 A;  2I3Q A;  3OOL A;  5E67 A;  2CW7 A;  4UN8 A;  5E63 A;  2VBL B;  3HYJ A;  2VBL A;  4UN7 G;  4UN9 A;  1MOW A;  1AF5 A;  3MX9 A;  2FLD A;  3C0W A;  2VS8 A;  4UNC A;  4UN7 A; 
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