3LKTM

Tyrosine 447 of protocatechuate 3,4-dioxygenase controls efficient progress through catalysis
Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
238
structure length
238
Chain Sequence
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPHPWRNGPNDWRPAHIHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Tyrosine 447 of Protocatechuate 3,4-Dioxygenase Controls Efficient Progress Through Catalysis
rcsb
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
molecule tags Oxidoreductase
source organism Pseudomonas putida
total genus 56
structure length 238
sequence length 238
chains with identical sequence N, O, P, Q, R
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2010-01-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00775 Dioxygenase_C Dioxygenase
M PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3lktM00
3LMXA 2PCDM 3PCHM 2BUVB 1EO9B 1DLQA 4WHOA 2BUTB 2BUZA 2BUWB 3I4VA 3O5UA 2BUYB 3PCJA 2BUTA 4WHQB 1S9AA 2BUWA 1YKLA 3PCLA 3PCLM 3HHXA 3MV6A 2BUMB 3PCGM 4WHPB 1DLMA 2BUUA 3T63M 1YKOB 3MV4M 3HHYA 3MFLA 2BOYA 2BUQA 3PCBM 1YKMB 3HGIA 4WHSB 1YKOA 3MI5M 3LMXM 2XSVA 2BV0B 3PCAA 3PCMA 3HKPA 3N9TA 4WHOD 5TD3A 3PCIA 2BUVA 4ILTA 1EO9A 3PCJM 3HJ8A 1EOCB 2AZQA 3T67A 3TH1A 3PCDA 3MV6M 2BUYA 2XSRA 4WHQA 1YKPB 4ILVA 3HJQA 3MFLM 2BUMA 4WHPA 2XSUA 1EOBB 1TMXA 1YKMA 3PCAM 4WHSA 2BUXB 3PCMM 1EOAB 1YKKB 2BURB 3PCCA 3PCIM 4WHRF 2BV0A 3PCFA 3LKTA 3MI1A 1EO2B 3T67M 3PCDM 3PCNA 3PCKA 3LXVA 3PCEA 3PCEM 1EOCA 4WHOB 3I4YA 3O6JA 2BUZB 2PCDA 3PCHA 1YKPA 3O6RA 1YKNB 1YKLB 4WHPD 1YKNA 1EOBA 4WHRB 2BUUB 3PCCM 1DMHA 4WHSD 3HJSA 2BUQB 3PCGA 2BUXA 3I51A 4WHRA 1EOAA 3PCFM 3LKTM 1YKKA 2BURA 3MI1M 3T63A 1DLTA 3MV4A 3O32A 3PCNM 3PCKM 3LXVM 3PCBA 1EO2A 3MI5A
chains in the Genus database with same CATH superfamily
3LMXA 2PCDM 3PCHM 2BUVB 1EO9B 1DLQA 4WHOA 2BUTB 2BUZA 2BUWB 3I4VA 3O5UA 2BUYB 3PCJA 2BUTA 4WHQB 1S9AA 2BUWA 1YKLA 3PCLA 3PCLM 3HHXA 3MV6A 2BUMB 3PCGM 4WHPB 1DLMA 2BUUA 3T63M 1YKOB 3MV4M 3HHYA 3MFLA 2BOYA 2BUQA 3PCBM 1YKMB 3HGIA 4WHSB 1YKOA 3MI5M 3LMXM 2XSVA 2BV0B 3PCAA 3PCMA 3HKPA 3N9TA 4WHOD 5TD3A 3PCIA 2BUVA 4ILTA 1EO9A 3PCJM 3HJ8A 1EOCB 2AZQA 3T67A 3TH1A 3PCDA 3MV6M 2BUYA 2XSRA 4WHQA 1YKPB 4ILVA 3HJQA 3MFLM 2BUMA 4WHPA 2XSUA 1EOBB 1TMXA 1YKMA 3PCAM 4WHSA 2BUXB 3PCMM 1EOAB 1YKKB 2BURB 3PCCA 3PCIM 4WHRF 2BV0A 3PCFA 3LKTA 3MI1A 1EO2B 3T67M 3PCDM 3PCNA 3PCKA 3LXVA 3PCEA 3PCEM 1EOCA 4WHOB 3I4YA 3O6JA 2BUZB 2PCDA 3PCHA 1YKPA 3O6RA 1YKNB 1YKLB 4WHPD 1YKNA 1EOBA 4WHRB 2BUUB 3PCCM 1DMHA 4WHSD 3HJSA 2BUQB 3PCGA 2BUXA 3I51A 4WHRA 1EOAA 3PCFM 3LKTM 1YKKA 2BURA 3MI1M 3T63A 1DLTA 3MV4A 3O32A 3PCNM 3PCKM 3LXVM 3PCBA 1EO2A 3MI5A
chains in the Genus database with same CATH topology
3LMXA 2PCDM 3PCHM 2BUVB 1EO9B 1DLQA 4WHOA 2BUTB 2BUZA 2BUWB 3I4VA 3O5UA 2BUYB 3PCJA 2BUTA 4WHQB 1S9AA 2BUWA 1YKLA 3PCLA 3PCLM 3HHXA 3MV6A 2BUMB 3PCGM 4WHPB 1DLMA 2BUUA 3T63M 1YKOB 3MV4M 3HHYA 3MFLA 2BOYA 2BUQA 3PCBM 1YKMB 3HGIA 4WHSB 1YKOA 3MI5M 3LMXM 2XSVA 2BV0B 3PCAA 3PCMA 3HKPA 3N9TA 4WHOD 5TD3A 3PCIA 2BUVA 4ILTA 1EO9A 3PCJM 3HJ8A 1EOCB 2AZQA 3T67A 3TH1A 3PCDA 3MV6M 2BUYA 2XSRA 4WHQA 1YKPB 4ILVA 3HJQA 3MFLM 2BUMA 4WHPA 2XSUA 1EOBB 1TMXA 1YKMA 3PCAM 4WHSA 2BUXB 3PCMM 1EOAB 1YKKB 2BURB 3PCCA 3PCIM 4WHRF 2BV0A 3PCFA 3LKTA 3MI1A 1EO2B 3T67M 3PCDM 3PCNA 3PCKA 3LXVA 3PCEA 3PCEM 1EOCA 4WHOB 3I4YA 3O6JA 2BUZB 2PCDA 3PCHA 1YKPA 3O6RA 1YKNB 1YKLB 4WHPD 1YKNA 1EOBA 4WHRB 2BUUB 3PCCM 1DMHA 4WHSD 3HJSA 2BUQB 3PCGA 2BUXA 3I51A 4WHRA 1EOAA 3PCFM 3LKTM 1YKKA 2BURA 3MI1M 3T63A 1DLTA 3MV4A 3O32A 3PCNM 3PCKM 3LXVM 3PCBA 1EO2A 3MI5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LMX A;  2PCD M;  3PCH M;  2BUV B;  1EO9 B;  1DLQ A;  4WHO A;  2BUT B;  2BUZ A;  2BUW B;  3I4V A;  3O5U A;  2BUY B;  3PCJ A;  2BUT A;  4WHQ B;  1S9A A;  2BUW A;  1YKL A;  3PCL A;  3PCL M;  3HHX A;  3MV6 A;  2BUM B;  3PCG M;  4WHP B;  1DLM A;  2BUU A;  3T63 M;  1YKO B;  3MV4 M;  3HHY A;  3MFL A;  2BOY A;  2BUQ A;  3PCB M;  1YKM B;  3HGI A;  4WHS B;  1YKO A;  3MI5 M;  3LMX M;  2XSV A;  2BV0 B;  3PCA A;  3PCM A;  3HKP A;  3N9T A;  4WHO D;  5TD3 A;  3PCI A;  2BUV A;  4ILT A;  1EO9 A;  3PCJ M;  3HJ8 A;  1EOC B;  2AZQ A;  3T67 A;  3TH1 A;  3PCD A;  3MV6 M;  2BUY A;  2XSR A;  4WHQ A;  1YKP B;  4ILV A;  3HJQ A;  3MFL M;  2BUM A;  4WHP A;  2XSU A;  1EOB B;  1TMX A;  1YKM A;  3PCA M;  4WHS A;  2BUX B;  3PCM M;  1EOA B;  1YKK B;  2BUR B;  3PCC A;  3PCI M;  4WHR F;  2BV0 A;  3PCF A;  3LKT A;  3MI1 A;  1EO2 B;  3T67 M;  3PCD M;  3PCN A;  3PCK A;  3LXV A;  3PCE A;  3PCE M;  1EOC A;  4WHO B;  3I4Y A;  3O6J A;  2BUZ B;  2PCD A;  3PCH A;  1YKP A;  3O6R A;  1YKN B;  1YKL B;  4WHP D;  1YKN A;  1EOB A;  4WHR B;  2BUU B;  3PCC M;  1DMH A;  4WHS D;  3HJS A;  2BUQ B;  3PCG A;  2BUX A;  3I51 A;  4WHR A;  1EOA A;  3PCF M;  3LKT M;  1YKK A;  2BUR A;  3MI1 M;  3T63 A;  1DLT A;  3MV4 A;  3O32 A;  3PCN M;  3PCK M;  3LXV M;  3PCB A;  1EO2 A;  3MI5 A; 
#chains in the Genus database with same CATH topology
 3LMX A;  2PCD M;  3PCH M;  2BUV B;  1EO9 B;  1DLQ A;  4WHO A;  2BUT B;  2BUZ A;  2BUW B;  3I4V A;  3O5U A;  2BUY B;  3PCJ A;  2BUT A;  4WHQ B;  1S9A A;  2BUW A;  1YKL A;  3PCL A;  3PCL M;  3HHX A;  3MV6 A;  2BUM B;  3PCG M;  4WHP B;  1DLM A;  2BUU A;  3T63 M;  1YKO B;  3MV4 M;  3HHY A;  3MFL A;  2BOY A;  2BUQ A;  3PCB M;  1YKM B;  3HGI A;  4WHS B;  1YKO A;  3MI5 M;  3LMX M;  2XSV A;  2BV0 B;  3PCA A;  3PCM A;  3HKP A;  3N9T A;  4WHO D;  5TD3 A;  3PCI A;  2BUV A;  4ILT A;  1EO9 A;  3PCJ M;  3HJ8 A;  1EOC B;  2AZQ A;  3T67 A;  3TH1 A;  3PCD A;  3MV6 M;  2BUY A;  2XSR A;  4WHQ A;  1YKP B;  4ILV A;  3HJQ A;  3MFL M;  2BUM A;  4WHP A;  2XSU A;  1EOB B;  1TMX A;  1YKM A;  3PCA M;  4WHS A;  2BUX B;  3PCM M;  1EOA B;  1YKK B;  2BUR B;  3PCC A;  3PCI M;  4WHR F;  2BV0 A;  3PCF A;  3LKT A;  3MI1 A;  1EO2 B;  3T67 M;  3PCD M;  3PCN A;  3PCK A;  3LXV A;  3PCE A;  3PCE M;  1EOC A;  4WHO B;  3I4Y A;  3O6J A;  2BUZ B;  2PCD A;  3PCH A;  1YKP A;  3O6R A;  1YKN B;  1YKL B;  4WHP D;  1YKN A;  1EOB A;  4WHR B;  2BUU B;  3PCC M;  1DMH A;  4WHS D;  3HJS A;  2BUQ B;  3PCG A;  2BUX A;  3I51 A;  4WHR A;  1EOA A;  3PCF M;  3LKT M;  1YKK A;  2BUR A;  3MI1 M;  3T63 A;  1DLT A;  3MV4 A;  3O32 A;  3PCN M;  3PCK M;  3LXV M;  3PCB A;  1EO2 A;  3MI5 A; 
#chains in the Genus database with same CATH homology
 3LMX A;  2PCD M;  3PCH M;  2BUV B;  1EO9 B;  1DLQ A;  4WHO A;  2BUT B;  2BUZ A;  2BUW B;  3I4V A;  3O5U A;  2BUY B;  3PCJ A;  2BUT A;  4WHQ B;  1S9A A;  2BUW A;  1YKL A;  3PCL A;  3PCL M;  3HHX A;  3MV6 A;  2BUM B;  3PCG M;  4WHP B;  1DLM A;  2BUU A;  3T63 M;  1YKO B;  3MV4 M;  3HHY A;  3MFL A;  2BOY A;  2BUQ A;  3PCB M;  1YKM B;  3HGI A;  4WHS B;  1YKO A;  3MI5 M;  3LMX M;  2XSV A;  2BV0 B;  3PCA A;  3PCM A;  3HKP A;  3N9T A;  4WHO D;  5TD3 A;  3PCI A;  2BUV A;  4ILT A;  1EO9 A;  3PCJ M;  3HJ8 A;  1EOC B;  2AZQ A;  3T67 A;  3TH1 A;  3PCD A;  3MV6 M;  2BUY A;  2XSR A;  4WHQ A;  1YKP B;  4ILV A;  3HJQ A;  3MFL M;  2BUM A;  4WHP A;  2XSU A;  1EOB B;  1TMX A;  1YKM A;  3PCA M;  4WHS A;  2BUX B;  3PCM M;  1EOA B;  1YKK B;  2BUR B;  3PCC A;  3PCI M;  4WHR F;  2BV0 A;  3PCF A;  3LKT A;  3MI1 A;  1EO2 B;  3T67 M;  3PCD M;  3PCN A;  3PCK A;  3LXV A;  3PCE A;  3PCE M;  1EOC A;  4WHO B;  3I4Y A;  3O6J A;  2BUZ B;  2PCD A;  3PCH A;  1YKP A;  3O6R A;  1YKN B;  1YKL B;  4WHP D;  1YKN A;  1EOB A;  4WHR B;  2BUU B;  3PCC M;  1DMH A;  4WHS D;  3HJS A;  2BUQ B;  3PCG A;  2BUX A;  3I51 A;  4WHR A;  1EOA A;  3PCF M;  3LKT M;  1YKK A;  2BUR A;  3MI1 M;  3T63 A;  1DLT A;  3MV4 A;  3O32 A;  3PCN M;  3PCK M;  3LXV M;  3PCB A;  1EO2 A;  3MI5 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.