3LMXA

Tyrosine 447 of protocatechuate 34,-dioxygenase controls efficient progress through catalysis
Total Genus 42
204060801001201401601800510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
200
structure length
200
Chain Sequence
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLAKPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGVPMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNLIEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (14-17)S9 (126-132)AH1 (17-21)TVIII1 (31-34)S5 (92-96)TVIII2 (87-90)TI2 (41-44)TI6 (84-87)S1 (48-57)TIV1 (98-101)TI4 (63-66)S2 (61-62)TII1 (132-135)S3 (66-74)S4 (78-79)S6 (103-109)TIV2 (99-102)S12 (180-184)S7 (114-115)S8 (121-122)TI7 (116-119)S10 (135-145)TIV4 (155-158)3H3 (168-170)S11 (171-177)TI8 (145-148)AH2 (149-154)3H2 (158-160)AH3 (164-167)TII2 (191-194)S13 (187-188)3H1 (24-26)TI3 (57-60)TI5 (74-77)Updating...
connected with : NaN
publication title Tyrosine 447 of Protocatechuate 34,-Dioxygenase Controls Efficient Progress Through Catalysis
rcsb
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
molecule tags Oxidoreductase
source organism Pseudomonas putida
total genus 42
structure length 200
sequence length 200
chains with identical sequence B, C
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2010-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3lmxA00
4WHQB 4WHSA 3PCNM 3MI5M 1YKNB 3O32A 3PCMM 3PCMA 3T67M 2BUVB 4WHSB 2BUXA 3MV6M 2BUQB 3LKTA 1EO2A 2XSVA 1DLMA 2BUTA 1YKPB 2BUXB 3HGIA 1TMXA 3PCLM 3I4VA 3PCIA 3HHYA 2BUTB 3HKPA 2BUZA 4WHOA 3PCBM 3MI1M 3PCBA 3PCCM 2BURA 2XSUA 1YKOB 3PCGA 2BUZB 4WHRF 3PCNA 1YKMA 4WHOB 3MI5A 2BURB 2BV0A 2BUQA 3T67A 4ILTA 3HHXA 3PCFM 1YKMB 1YKPA 4ILVA 2BUYA 3PCEM 3PCEA 3LMXM 2BV0B 3I4YA 3MV6A 3HJQA 3PCKM 1DLTA 2BUUB 2BUMB 3O5UA 1YKLA 4WHPD 1S9AA 2BUYB 3TH1A 4WHRB 3PCHM 3PCLA 1YKOA 1YKLB 3PCDM 2PCDM 2PCDA 3MI1A 3PCCA 1EOCA 3PCJM 3I51A 3LXVM 1EOCB 3PCAM 3MV4M 2BUUA 3PCAA 2BUMA 1EOBB 3PCFA 4WHPB 4WHSD 3MFLM 1DMHA 1DLQA 2AZQA 3LMXA 4WHRA 3PCKA 1YKKA 2XSRA 3O6JA 1YKKB 3PCHA 2BOYA 3T63M 1EOAA 3PCDA 5TD3A 2BUWA 1EOAB 3PCJA 1EOBA 4WHPA 3O6RA 4WHOD 3HJ8A 3LKTM 3LXVA 1EO9A 2BUWB 3MV4A 3MFLA 3HJSA 1EO2B 1EO9B 3PCIM 3N9TA 4WHQA 3T63A 1YKNA 3PCGM 2BUVA
chains in the Genus database with same CATH superfamily
4WHQB 4WHSA 3PCNM 3MI5M 1YKNB 3O32A 3PCMM 3PCMA 3T67M 2BUVB 4WHSB 2BUXA 3MV6M 2BUQB 3LKTA 1EO2A 2XSVA 1DLMA 2BUTA 1YKPB 2BUXB 3HGIA 1TMXA 3PCLM 3I4VA 3PCIA 3HHYA 2BUTB 3HKPA 2BUZA 4WHOA 3PCBM 3MI1M 3PCBA 3PCCM 2BURA 2XSUA 1YKOB 3PCGA 2BUZB 4WHRF 3PCNA 1YKMA 4WHOB 3MI5A 2BURB 2BV0A 2BUQA 3T67A 4ILTA 3HHXA 3PCFM 1YKMB 1YKPA 4ILVA 2BUYA 3PCEM 3PCEA 3LMXM 2BV0B 3I4YA 3MV6A 3HJQA 3PCKM 1DLTA 2BUUB 2BUMB 3O5UA 1YKLA 4WHPD 1S9AA 2BUYB 3TH1A 4WHRB 3PCHM 3PCLA 1YKOA 1YKLB 3PCDM 2PCDM 2PCDA 3MI1A 3PCCA 1EOCA 3PCJM 3I51A 3LXVM 1EOCB 3PCAM 3MV4M 2BUUA 3PCAA 2BUMA 1EOBB 3PCFA 4WHPB 4WHSD 3MFLM 1DMHA 1DLQA 2AZQA 3LMXA 4WHRA 3PCKA 1YKKA 2XSRA 3O6JA 1YKKB 3PCHA 2BOYA 3T63M 1EOAA 3PCDA 5TD3A 2BUWA 1EOAB 3PCJA 1EOBA 4WHPA 3O6RA 4WHOD 3HJ8A 3LKTM 3LXVA 1EO9A 2BUWB 3MV4A 3MFLA 3HJSA 1EO2B 1EO9B 3PCIM 3N9TA 4WHQA 3T63A 1YKNA 3PCGM 2BUVA
chains in the Genus database with same CATH topology
4WHQB 4WHSA 3PCNM 3MI5M 1YKNB 3O32A 3PCMM 3PCMA 3T67M 2BUVB 4WHSB 2BUXA 3MV6M 2BUQB 3LKTA 1EO2A 2XSVA 1DLMA 2BUTA 1YKPB 2BUXB 3HGIA 1TMXA 3PCLM 3I4VA 3PCIA 3HHYA 2BUTB 3HKPA 2BUZA 4WHOA 3PCBM 3MI1M 3PCBA 3PCCM 2BURA 2XSUA 1YKOB 3PCGA 2BUZB 4WHRF 3PCNA 1YKMA 4WHOB 3MI5A 2BURB 2BV0A 2BUQA 3T67A 4ILTA 3HHXA 3PCFM 1YKMB 1YKPA 4ILVA 2BUYA 3PCEM 3PCEA 3LMXM 2BV0B 3I4YA 3MV6A 3HJQA 3PCKM 1DLTA 2BUUB 2BUMB 3O5UA 1YKLA 4WHPD 1S9AA 2BUYB 3TH1A 4WHRB 3PCHM 3PCLA 1YKOA 1YKLB 3PCDM 2PCDM 2PCDA 3MI1A 3PCCA 1EOCA 3PCJM 3I51A 3LXVM 1EOCB 3PCAM 3MV4M 2BUUA 3PCAA 2BUMA 1EOBB 3PCFA 4WHPB 4WHSD 3MFLM 1DMHA 1DLQA 2AZQA 3LMXA 4WHRA 3PCKA 1YKKA 2XSRA 3O6JA 1YKKB 3PCHA 2BOYA 3T63M 1EOAA 3PCDA 5TD3A 2BUWA 1EOAB 3PCJA 1EOBA 4WHPA 3O6RA 4WHOD 3HJ8A 3LKTM 3LXVA 1EO9A 2BUWB 3MV4A 3MFLA 3HJSA 1EO2B 1EO9B 3PCIM 3N9TA 4WHQA 3T63A 1YKNA 3PCGM 2BUVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WHQ B;  4WHS A;  3PCN M;  3MI5 M;  1YKN B;  3O32 A;  3PCM M;  3PCM A;  3T67 M;  2BUV B;  4WHS B;  2BUX A;  3MV6 M;  2BUQ B;  3LKT A;  1EO2 A;  2XSV A;  1DLM A;  2BUT A;  1YKP B;  2BUX B;  3HGI A;  1TMX A;  3PCL M;  3I4V A;  3PCI A;  3HHY A;  2BUT B;  3HKP A;  2BUZ A;  4WHO A;  3PCB M;  3MI1 M;  3PCB A;  3PCC M;  2BUR A;  2XSU A;  1YKO B;  3PCG A;  2BUZ B;  4WHR F;  3PCN A;  1YKM A;  4WHO B;  3MI5 A;  2BUR B;  2BV0 A;  2BUQ A;  3T67 A;  4ILT A;  3HHX A;  3PCF M;  1YKM B;  1YKP A;  4ILV A;  2BUY A;  3PCE M;  3PCE A;  3LMX M;  2BV0 B;  3I4Y A;  3MV6 A;  3HJQ A;  3PCK M;  1DLT A;  2BUU B;  2BUM B;  3O5U A;  1YKL A;  4WHP D;  1S9A A;  2BUY B;  3TH1 A;  4WHR B;  3PCH M;  3PCL A;  1YKO A;  1YKL B;  3PCD M;  2PCD M;  2PCD A;  3MI1 A;  3PCC A;  1EOC A;  3PCJ M;  3I51 A;  3LXV M;  1EOC B;  3PCA M;  3MV4 M;  2BUU A;  3PCA A;  2BUM A;  1EOB B;  3PCF A;  4WHP B;  4WHS D;  3MFL M;  1DMH A;  1DLQ A;  2AZQ A;  3LMX A;  4WHR A;  3PCK A;  1YKK A;  2XSR A;  3O6J A;  1YKK B;  3PCH A;  2BOY A;  3T63 M;  1EOA A;  3PCD A;  5TD3 A;  2BUW A;  1EOA B;  3PCJ A;  1EOB A;  4WHP A;  3O6R A;  4WHO D;  3HJ8 A;  3LKT M;  3LXV A;  1EO9 A;  2BUW B;  3MV4 A;  3MFL A;  3HJS A;  1EO2 B;  1EO9 B;  3PCI M;  3N9T A;  4WHQ A;  3T63 A;  1YKN A;  3PCG M;  2BUV A; 
#chains in the Genus database with same CATH topology
 4WHQ B;  4WHS A;  3PCN M;  3MI5 M;  1YKN B;  3O32 A;  3PCM M;  3PCM A;  3T67 M;  2BUV B;  4WHS B;  2BUX A;  3MV6 M;  2BUQ B;  3LKT A;  1EO2 A;  2XSV A;  1DLM A;  2BUT A;  1YKP B;  2BUX B;  3HGI A;  1TMX A;  3PCL M;  3I4V A;  3PCI A;  3HHY A;  2BUT B;  3HKP A;  2BUZ A;  4WHO A;  3PCB M;  3MI1 M;  3PCB A;  3PCC M;  2BUR A;  2XSU A;  1YKO B;  3PCG A;  2BUZ B;  4WHR F;  3PCN A;  1YKM A;  4WHO B;  3MI5 A;  2BUR B;  2BV0 A;  2BUQ A;  3T67 A;  4ILT A;  3HHX A;  3PCF M;  1YKM B;  1YKP A;  4ILV A;  2BUY A;  3PCE M;  3PCE A;  3LMX M;  2BV0 B;  3I4Y A;  3MV6 A;  3HJQ A;  3PCK M;  1DLT A;  2BUU B;  2BUM B;  3O5U A;  1YKL A;  4WHP D;  1S9A A;  2BUY B;  3TH1 A;  4WHR B;  3PCH M;  3PCL A;  1YKO A;  1YKL B;  3PCD M;  2PCD M;  2PCD A;  3MI1 A;  3PCC A;  1EOC A;  3PCJ M;  3I51 A;  3LXV M;  1EOC B;  3PCA M;  3MV4 M;  2BUU A;  3PCA A;  2BUM A;  1EOB B;  3PCF A;  4WHP B;  4WHS D;  3MFL M;  1DMH A;  1DLQ A;  2AZQ A;  3LMX A;  4WHR A;  3PCK A;  1YKK A;  2XSR A;  3O6J A;  1YKK B;  3PCH A;  2BOY A;  3T63 M;  1EOA A;  3PCD A;  5TD3 A;  2BUW A;  1EOA B;  3PCJ A;  1EOB A;  4WHP A;  3O6R A;  4WHO D;  3HJ8 A;  3LKT M;  3LXV A;  1EO9 A;  2BUW B;  3MV4 A;  3MFL A;  3HJS A;  1EO2 B;  1EO9 B;  3PCI M;  3N9T A;  4WHQ A;  3T63 A;  1YKN A;  3PCG M;  2BUV A; 
#chains in the Genus database with same CATH homology
 4WHQ B;  4WHS A;  3PCN M;  3MI5 M;  1YKN B;  3O32 A;  3PCM M;  3PCM A;  3T67 M;  2BUV B;  4WHS B;  2BUX A;  3MV6 M;  2BUQ B;  3LKT A;  1EO2 A;  2XSV A;  1DLM A;  2BUT A;  1YKP B;  2BUX B;  3HGI A;  1TMX A;  3PCL M;  3I4V A;  3PCI A;  3HHY A;  2BUT B;  3HKP A;  2BUZ A;  4WHO A;  3PCB M;  3MI1 M;  3PCB A;  3PCC M;  2BUR A;  2XSU A;  1YKO B;  3PCG A;  2BUZ B;  4WHR F;  3PCN A;  1YKM A;  4WHO B;  3MI5 A;  2BUR B;  2BV0 A;  2BUQ A;  3T67 A;  4ILT A;  3HHX A;  3PCF M;  1YKM B;  1YKP A;  4ILV A;  2BUY A;  3PCE M;  3PCE A;  3LMX M;  2BV0 B;  3I4Y A;  3MV6 A;  3HJQ A;  3PCK M;  1DLT A;  2BUU B;  2BUM B;  3O5U A;  1YKL A;  4WHP D;  1S9A A;  2BUY B;  3TH1 A;  4WHR B;  3PCH M;  3PCL A;  1YKO A;  1YKL B;  3PCD M;  2PCD M;  2PCD A;  3MI1 A;  3PCC A;  1EOC A;  3PCJ M;  3I51 A;  3LXV M;  1EOC B;  3PCA M;  3MV4 M;  2BUU A;  3PCA A;  2BUM A;  1EOB B;  3PCF A;  4WHP B;  4WHS D;  3MFL M;  1DMH A;  1DLQ A;  2AZQ A;  3LMX A;  4WHR A;  3PCK A;  1YKK A;  2XSR A;  3O6J A;  1YKK B;  3PCH A;  2BOY A;  3T63 M;  1EOA A;  3PCD A;  5TD3 A;  2BUW A;  1EOA B;  3PCJ A;  1EOB A;  4WHP A;  3O6R A;  4WHO D;  3HJ8 A;  3LKT M;  3LXV A;  1EO9 A;  2BUW B;  3MV4 A;  3MFL A;  3HJS A;  1EO2 B;  1EO9 B;  3PCI M;  3N9T A;  4WHQ A;  3T63 A;  1YKN A;  3PCG M;  2BUV A; 
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