3LMXA

Tyrosine 447 of protocatechuate 34,-dioxygenase controls efficient progress through catalysis
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
200
structure length
200
Chain Sequence
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLAKPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGVPMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNLIEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (14-17)S9 (126-132)AH1 (17-21)TVIII1 (31-34)S5 (92-96)TVIII2 (87-90)TI2 (41-44)TI6 (84-87)S1 (48-57)TIV1 (98-101)TI4 (63-66)S2 (61-62)TII1 (132-135)S3 (66-74)S4 (78-79)S6 (103-109)TIV2 (99-102)S12 (180-184)S7 (114-115)S8 (121-122)TI7 (116-119)S10 (135-145)TIV4 (155-158)3H3 (168-170)S11 (171-177)TI8 (145-148)AH2 (149-154)3H2 (158-160)AH3 (164-167)TII2 (191-194)S13 (187-188)3H1 (24-26)TI3 (57-60)TI5 (74-77)Updating...
connected with : NaN
publication title Tyrosine 447 of Protocatechuate 34,-Dioxygenase Controls Efficient Progress Through Catalysis
rcsb
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
molecule tags Oxidoreductase
source organism Pseudomonas putida
total genus 42
structure length 200
sequence length 200
chains with identical sequence B, C
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2010-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3lmxA00
3MI5A 3PCJA 2XSVA 3T67A 1DLMA 2BUMB 1TMXA 3O5UA 1EOCA 3PCLA 2BUWA 3PCGM 3O6JA 3HGIA 1EOBA 2PCDM 3MV6M 3PCGA 3I51A 3LKTM 2BURB 4WHOA 3T63M 2BUUA 1YKNA 3HHYA 2PCDA 3MFLM 2BUVA 3MV6A 3O32A 2BUYA 3LKTA 3PCEM 2BV0B 3PCFM 2XSUA 4WHSB 3MFLA 4WHOD 3TH1A 3LXVM 4WHRA 3PCEA 2BOYA 4WHQB 3HHXA 2BUXB 3LXVA 1YKMA 1EOCB 1EOAA 2BUMA 3O6RA 4ILTA 1YKOA 1DMHA 1DLTA 3PCBM 3MI1M 1YKKB 2BUQB 2BUZA 3PCMM 4WHPA 3T63A 4WHOB 1EO9B 2BUTB 2BUUB 3MI1A 3PCBA 1YKLA 3PCIM 3HJ8A 1YKPA 3PCFA 2BUYB 1EO2A 3PCLM 3PCHM 4WHPD 3HKPA 3PCIA 4WHSA 3LMXM 3PCAM 3PCNM 4WHRB 4WHRF 3PCHA 3N9TA 2BUWB 4WHQA 3LMXA 3PCAA 2XSRA 3PCNA 2BUXA 1YKMB 1EOAB 3I4YA 4WHSD 1EOBB 3PCCM 3HJSA 2BURA 3MV4A 1S9AA 1YKNB 3HJQA 3PCKM 1YKOB 3PCMA 2BUVB 1DLQA 4ILVA 2AZQA 3PCDM 2BUZB 1YKKA 3PCCA 4WHPB 3I4VA 2BUQA 3MV4M 2BV0A 3PCKA 3MI5M 1EO9A 1YKLB 2BUTA 3PCJM 3T67M 3PCDA 5TD3A 1YKPB 1EO2B
chains in the Genus database with same CATH superfamily
3MI5A 3PCJA 2XSVA 3T67A 1DLMA 2BUMB 1TMXA 3O5UA 1EOCA 3PCLA 2BUWA 3PCGM 3O6JA 3HGIA 1EOBA 2PCDM 3MV6M 3PCGA 3I51A 3LKTM 2BURB 4WHOA 3T63M 2BUUA 1YKNA 3HHYA 2PCDA 3MFLM 2BUVA 3MV6A 3O32A 2BUYA 3LKTA 3PCEM 2BV0B 3PCFM 2XSUA 4WHSB 3MFLA 4WHOD 3TH1A 3LXVM 4WHRA 3PCEA 2BOYA 4WHQB 3HHXA 2BUXB 3LXVA 1YKMA 1EOCB 1EOAA 2BUMA 3O6RA 4ILTA 1YKOA 1DMHA 1DLTA 3PCBM 3MI1M 1YKKB 2BUQB 2BUZA 3PCMM 4WHPA 3T63A 4WHOB 1EO9B 2BUTB 2BUUB 3MI1A 3PCBA 1YKLA 3PCIM 3HJ8A 1YKPA 3PCFA 2BUYB 1EO2A 3PCLM 3PCHM 4WHPD 3HKPA 3PCIA 4WHSA 3LMXM 3PCAM 3PCNM 4WHRB 4WHRF 3PCHA 3N9TA 2BUWB 4WHQA 3LMXA 3PCAA 2XSRA 3PCNA 2BUXA 1YKMB 1EOAB 3I4YA 4WHSD 1EOBB 3PCCM 3HJSA 2BURA 3MV4A 1S9AA 1YKNB 3HJQA 3PCKM 1YKOB 3PCMA 2BUVB 1DLQA 4ILVA 2AZQA 3PCDM 2BUZB 1YKKA 3PCCA 4WHPB 3I4VA 2BUQA 3MV4M 2BV0A 3PCKA 3MI5M 1EO9A 1YKLB 2BUTA 3PCJM 3T67M 3PCDA 5TD3A 1YKPB 1EO2B
chains in the Genus database with same CATH topology
3MI5A 3PCJA 2XSVA 3T67A 1DLMA 2BUMB 1TMXA 3O5UA 1EOCA 3PCLA 2BUWA 3PCGM 3O6JA 3HGIA 1EOBA 2PCDM 3MV6M 3PCGA 3I51A 3LKTM 2BURB 4WHOA 3T63M 2BUUA 1YKNA 3HHYA 2PCDA 3MFLM 2BUVA 3MV6A 3O32A 2BUYA 3LKTA 3PCEM 2BV0B 3PCFM 2XSUA 4WHSB 3MFLA 4WHOD 3TH1A 3LXVM 4WHRA 3PCEA 2BOYA 4WHQB 3HHXA 2BUXB 3LXVA 1YKMA 1EOCB 1EOAA 2BUMA 3O6RA 4ILTA 1YKOA 1DMHA 1DLTA 3PCBM 3MI1M 1YKKB 2BUQB 2BUZA 3PCMM 4WHPA 3T63A 4WHOB 1EO9B 2BUTB 2BUUB 3MI1A 3PCBA 1YKLA 3PCIM 3HJ8A 1YKPA 3PCFA 2BUYB 1EO2A 3PCLM 3PCHM 4WHPD 3HKPA 3PCIA 4WHSA 3LMXM 3PCAM 3PCNM 4WHRB 4WHRF 3PCHA 3N9TA 2BUWB 4WHQA 3LMXA 3PCAA 2XSRA 3PCNA 2BUXA 1YKMB 1EOAB 3I4YA 4WHSD 1EOBB 3PCCM 3HJSA 2BURA 3MV4A 1S9AA 1YKNB 3HJQA 3PCKM 1YKOB 3PCMA 2BUVB 1DLQA 4ILVA 2AZQA 3PCDM 2BUZB 1YKKA 3PCCA 4WHPB 3I4VA 2BUQA 3MV4M 2BV0A 3PCKA 3MI5M 1EO9A 1YKLB 2BUTA 3PCJM 3T67M 3PCDA 5TD3A 1YKPB 1EO2B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MI5 A;  3PCJ A;  2XSV A;  3T67 A;  1DLM A;  2BUM B;  1TMX A;  3O5U A;  1EOC A;  3PCL A;  2BUW A;  3PCG M;  3O6J A;  3HGI A;  1EOB A;  2PCD M;  3MV6 M;  3PCG A;  3I51 A;  3LKT M;  2BUR B;  4WHO A;  3T63 M;  2BUU A;  1YKN A;  3HHY A;  2PCD A;  3MFL M;  2BUV A;  3MV6 A;  3O32 A;  2BUY A;  3LKT A;  3PCE M;  2BV0 B;  3PCF M;  2XSU A;  4WHS B;  3MFL A;  4WHO D;  3TH1 A;  3LXV M;  4WHR A;  3PCE A;  2BOY A;  4WHQ B;  3HHX A;  2BUX B;  3LXV A;  1YKM A;  1EOC B;  1EOA A;  2BUM A;  3O6R A;  4ILT A;  1YKO A;  1DMH A;  1DLT A;  3PCB M;  3MI1 M;  1YKK B;  2BUQ B;  2BUZ A;  3PCM M;  4WHP A;  3T63 A;  4WHO B;  1EO9 B;  2BUT B;  2BUU B;  3MI1 A;  3PCB A;  1YKL A;  3PCI M;  3HJ8 A;  1YKP A;  3PCF A;  2BUY B;  1EO2 A;  3PCL M;  3PCH M;  4WHP D;  3HKP A;  3PCI A;  4WHS A;  3LMX M;  3PCA M;  3PCN M;  4WHR B;  4WHR F;  3PCH A;  3N9T A;  2BUW B;  4WHQ A;  3LMX A;  3PCA A;  2XSR A;  3PCN A;  2BUX A;  1YKM B;  1EOA B;  3I4Y A;  4WHS D;  1EOB B;  3PCC M;  3HJS A;  2BUR A;  3MV4 A;  1S9A A;  1YKN B;  3HJQ A;  3PCK M;  1YKO B;  3PCM A;  2BUV B;  1DLQ A;  4ILV A;  2AZQ A;  3PCD M;  2BUZ B;  1YKK A;  3PCC A;  4WHP B;  3I4V A;  2BUQ A;  3MV4 M;  2BV0 A;  3PCK A;  3MI5 M;  1EO9 A;  1YKL B;  2BUT A;  3PCJ M;  3T67 M;  3PCD A;  5TD3 A;  1YKP B;  1EO2 B; 
#chains in the Genus database with same CATH topology
 3MI5 A;  3PCJ A;  2XSV A;  3T67 A;  1DLM A;  2BUM B;  1TMX A;  3O5U A;  1EOC A;  3PCL A;  2BUW A;  3PCG M;  3O6J A;  3HGI A;  1EOB A;  2PCD M;  3MV6 M;  3PCG A;  3I51 A;  3LKT M;  2BUR B;  4WHO A;  3T63 M;  2BUU A;  1YKN A;  3HHY A;  2PCD A;  3MFL M;  2BUV A;  3MV6 A;  3O32 A;  2BUY A;  3LKT A;  3PCE M;  2BV0 B;  3PCF M;  2XSU A;  4WHS B;  3MFL A;  4WHO D;  3TH1 A;  3LXV M;  4WHR A;  3PCE A;  2BOY A;  4WHQ B;  3HHX A;  2BUX B;  3LXV A;  1YKM A;  1EOC B;  1EOA A;  2BUM A;  3O6R A;  4ILT A;  1YKO A;  1DMH A;  1DLT A;  3PCB M;  3MI1 M;  1YKK B;  2BUQ B;  2BUZ A;  3PCM M;  4WHP A;  3T63 A;  4WHO B;  1EO9 B;  2BUT B;  2BUU B;  3MI1 A;  3PCB A;  1YKL A;  3PCI M;  3HJ8 A;  1YKP A;  3PCF A;  2BUY B;  1EO2 A;  3PCL M;  3PCH M;  4WHP D;  3HKP A;  3PCI A;  4WHS A;  3LMX M;  3PCA M;  3PCN M;  4WHR B;  4WHR F;  3PCH A;  3N9T A;  2BUW B;  4WHQ A;  3LMX A;  3PCA A;  2XSR A;  3PCN A;  2BUX A;  1YKM B;  1EOA B;  3I4Y A;  4WHS D;  1EOB B;  3PCC M;  3HJS A;  2BUR A;  3MV4 A;  1S9A A;  1YKN B;  3HJQ A;  3PCK M;  1YKO B;  3PCM A;  2BUV B;  1DLQ A;  4ILV A;  2AZQ A;  3PCD M;  2BUZ B;  1YKK A;  3PCC A;  4WHP B;  3I4V A;  2BUQ A;  3MV4 M;  2BV0 A;  3PCK A;  3MI5 M;  1EO9 A;  1YKL B;  2BUT A;  3PCJ M;  3T67 M;  3PCD A;  5TD3 A;  1YKP B;  1EO2 B; 
#chains in the Genus database with same CATH homology
 3MI5 A;  3PCJ A;  2XSV A;  3T67 A;  1DLM A;  2BUM B;  1TMX A;  3O5U A;  1EOC A;  3PCL A;  2BUW A;  3PCG M;  3O6J A;  3HGI A;  1EOB A;  2PCD M;  3MV6 M;  3PCG A;  3I51 A;  3LKT M;  2BUR B;  4WHO A;  3T63 M;  2BUU A;  1YKN A;  3HHY A;  2PCD A;  3MFL M;  2BUV A;  3MV6 A;  3O32 A;  2BUY A;  3LKT A;  3PCE M;  2BV0 B;  3PCF M;  2XSU A;  4WHS B;  3MFL A;  4WHO D;  3TH1 A;  3LXV M;  4WHR A;  3PCE A;  2BOY A;  4WHQ B;  3HHX A;  2BUX B;  3LXV A;  1YKM A;  1EOC B;  1EOA A;  2BUM A;  3O6R A;  4ILT A;  1YKO A;  1DMH A;  1DLT A;  3PCB M;  3MI1 M;  1YKK B;  2BUQ B;  2BUZ A;  3PCM M;  4WHP A;  3T63 A;  4WHO B;  1EO9 B;  2BUT B;  2BUU B;  3MI1 A;  3PCB A;  1YKL A;  3PCI M;  3HJ8 A;  1YKP A;  3PCF A;  2BUY B;  1EO2 A;  3PCL M;  3PCH M;  4WHP D;  3HKP A;  3PCI A;  4WHS A;  3LMX M;  3PCA M;  3PCN M;  4WHR B;  4WHR F;  3PCH A;  3N9T A;  2BUW B;  4WHQ A;  3LMX A;  3PCA A;  2XSR A;  3PCN A;  2BUX A;  1YKM B;  1EOA B;  3I4Y A;  4WHS D;  1EOB B;  3PCC M;  3HJS A;  2BUR A;  3MV4 A;  1S9A A;  1YKN B;  3HJQ A;  3PCK M;  1YKO B;  3PCM A;  2BUV B;  1DLQ A;  4ILV A;  2AZQ A;  3PCD M;  2BUZ B;  1YKK A;  3PCC A;  4WHP B;  3I4V A;  2BUQ A;  3MV4 M;  2BV0 A;  3PCK A;  3MI5 M;  1EO9 A;  1YKL B;  2BUT A;  3PCJ M;  3T67 M;  3PCD A;  5TD3 A;  1YKP B;  1EO2 B; 
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