3LXV | Genus

Total Genus 42

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	42
sequence length	200
structure length	200
Chain Sequence	PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLAKPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGVPMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNLIEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Tyrosine 447 of Protocatechuate 3,4-Dioxygenase Controls Efficient Progress Through Catalysis rcsb
molecule keywords	Protocatechuate 3,4-dioxygenase alpha chain
molecule tags	Oxidoreductase/oxidoreductase
source organism	Pseudomonas putida
total genus	42
structure length	200
sequence length	200
chains with identical sequence	B, C
ec nomenclature	ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date	2010-02-25

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00775	Dioxygenase_C	Dioxygenase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.130.10	Mainly Beta	Sandwich	Protocatechuate 3,4-Dioxygenase, subunit A	Aromatic compound dioxygenase	3lxvA00

1YKNB 1EO2B 1S9AA 3PCDA 3MFLM 3PCIM 2BUVA 4WHRB 3MI5A 1YKPB 3PCKM 4WHPA 4WHQB 3PCEM 1YKKB 3LXVA 3PCCA 1DLMA 2BUMA 3PCGA 3PCBA 4WHRF 3HHXA 3MV6A 1TMXA 4WHOA 3O6JA 3HJ8A 3PCNA 3PCJA 1YKLB 2XSUA 3PCDM 3PCAA 1YKMA 4WHSA 3MI5M 3O32A 2BUZA 3HJSA 3HKPA 1EO9B 2BUXA 3I4VA 3PCMA 1EOAA 3N9TA 4ILVA 2BUUB 3PCFA 3LXVM 3PCCM 2BUVB 2BV0A 3PCGM 3PCBM 1YKOA 3MV6M 4WHPB 3I51A 3LKTA 3PCNM 3PCJM 3PCLA 3PCAM 3T63A 1EOCA 1EOBA 2BUMB 1DLTA 3PCMM 2BUTA 2BURA 4WHOB 3PCFM 3MI1A 3LMXA 2BOYA 1YKMB 4WHSB 3TH1A 2BUQA 2BUZB 2BUXB 1EOAB 2PCDA 2BUYA 3LKTM 3MV4A 2BUWA 3PCLM 3T67A 3T63M 1YKNA 2BV0B 1EO2A 2AZQA 1YKOB 3PCHA 4WHRA 1YKPA 3MI1M 3LMXM 4WHQA 1YKKA 1EOCB 1EOBB 3MFLA 4WHPD 3PCIA 2XSVA 5TD3A 2PCDM 2BUTB 3PCKA 2BURB 3O6RA 3HJQA 3HHYA 3MV4M 2XSRA 3T67M 3PCEA 1DLQA 1YKLA 2BUQB 4WHOD 1DMHA 3PCHM 3I4YA 4ILTA 2BUYB 1EO9A 4WHSD 3HGIA 2BUWB 2BUUA 3O5UA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1YKN B;  1EO2 B;  1S9A A;  3PCD A;  3MFL M;  3PCI M;  2BUV A;  4WHR B;  3MI5 A;  1YKP B;  3PCK M;  4WHP A;  4WHQ B;  3PCE M;  1YKK B;  3LXV A;  3PCC A;  1DLM A;  2BUM A;  3PCG A;  3PCB A;  4WHR F;  3HHX A;  3MV6 A;  1TMX A;  4WHO A;  3O6J A;  3HJ8 A;  3PCN A;  3PCJ A;  1YKL B;  2XSU A;  3PCD M;  3PCA A;  1YKM A;  4WHS A;  3MI5 M;  3O32 A;  2BUZ A;  3HJS A;  3HKP A;  1EO9 B;  2BUX A;  3I4V A;  3PCM A;  1EOA A;  3N9T A;  4ILV A;  2BUU B;  3PCF A;  3LXV M;  3PCC M;  2BUV B;  2BV0 A;  3PCG M;  3PCB M;  1YKO A;  3MV6 M;  4WHP B;  3I51 A;  3LKT A;  3PCN M;  3PCJ M;  3PCL A;  3PCA M;  3T63 A;  1EOC A;  1EOB A;  2BUM B;  1DLT A;  3PCM M;  2BUT A;  2BUR A;  4WHO B;  3PCF M;  3MI1 A;  3LMX A;  2BOY A;  1YKM B;  4WHS B;  3TH1 A;  2BUQ A;  2BUZ B;  2BUX B;  1EOA B;  2PCD A;  2BUY A;  3LKT M;  3MV4 A;  2BUW A;  3PCL M;  3T67 A;  3T63 M;  1YKN A;  2BV0 B;  1EO2 A;  2AZQ A;  1YKO B;  3PCH A;  4WHR A;  1YKP A;  3MI1 M;  3LMX M;  4WHQ A;  1YKK A;  1EOC B;  1EOB B;  3MFL A;  4WHP D;  3PCI A;  2XSV A;  5TD3 A;  2PCD M;  2BUT B;  3PCK A;  2BUR B;  3O6R A;  3HJQ A;  3HHY A;  3MV4 M;  2XSR A;  3T67 M;  3PCE A;  1DLQ A;  1YKL A;  2BUQ B;  4WHO D;  1DMH A;  3PCH M;  3I4Y A;  4ILT A;  2BUY B;  1EO9 A;  4WHS D;  3HGI A;  2BUW B;  2BUU A;  3O5U A; 
#chains in the Genus database with same CATH topology
 1YKN B;  1EO2 B;  1S9A A;  3PCD A;  3MFL M;  3PCI M;  2BUV A;  4WHR B;  3MI5 A;  1YKP B;  3PCK M;  4WHP A;  4WHQ B;  3PCE M;  1YKK B;  3LXV A;  3PCC A;  1DLM A;  2BUM A;  3PCG A;  3PCB A;  4WHR F;  3HHX A;  3MV6 A;  1TMX A;  4WHO A;  3O6J A;  3HJ8 A;  3PCN A;  3PCJ A;  1YKL B;  2XSU A;  3PCD M;  3PCA A;  1YKM A;  4WHS A;  3MI5 M;  3O32 A;  2BUZ A;  3HJS A;  3HKP A;  1EO9 B;  2BUX A;  3I4V A;  3PCM A;  1EOA A;  3N9T A;  4ILV A;  2BUU B;  3PCF A;  3LXV M;  3PCC M;  2BUV B;  2BV0 A;  3PCG M;  3PCB M;  1YKO A;  3MV6 M;  4WHP B;  3I51 A;  3LKT A;  3PCN M;  3PCJ M;  3PCL A;  3PCA M;  3T63 A;  1EOC A;  1EOB A;  2BUM B;  1DLT A;  3PCM M;  2BUT A;  2BUR A;  4WHO B;  3PCF M;  3MI1 A;  3LMX A;  2BOY A;  1YKM B;  4WHS B;  3TH1 A;  2BUQ A;  2BUZ B;  2BUX B;  1EOA B;  2PCD A;  2BUY A;  3LKT M;  3MV4 A;  2BUW A;  3PCL M;  3T67 A;  3T63 M;  1YKN A;  2BV0 B;  1EO2 A;  2AZQ A;  1YKO B;  3PCH A;  4WHR A;  1YKP A;  3MI1 M;  3LMX M;  4WHQ A;  1YKK A;  1EOC B;  1EOB B;  3MFL A;  4WHP D;  3PCI A;  2XSV A;  5TD3 A;  2PCD M;  2BUT B;  3PCK A;  2BUR B;  3O6R A;  3HJQ A;  3HHY A;  3MV4 M;  2XSR A;  3T67 M;  3PCE A;  1DLQ A;  1YKL A;  2BUQ B;  4WHO D;  1DMH A;  3PCH M;  3I4Y A;  4ILT A;  2BUY B;  1EO9 A;  4WHS D;  3HGI A;  2BUW B;  2BUU A;  3O5U A; 
#chains in the Genus database with same CATH homology
 1YKN B;  1EO2 B;  1S9A A;  3PCD A;  3MFL M;  3PCI M;  2BUV A;  4WHR B;  3MI5 A;  1YKP B;  3PCK M;  4WHP A;  4WHQ B;  3PCE M;  1YKK B;  3LXV A;  3PCC A;  1DLM A;  2BUM A;  3PCG A;  3PCB A;  4WHR F;  3HHX A;  3MV6 A;  1TMX A;  4WHO A;  3O6J A;  3HJ8 A;  3PCN A;  3PCJ A;  1YKL B;  2XSU A;  3PCD M;  3PCA A;  1YKM A;  4WHS A;  3MI5 M;  3O32 A;  2BUZ A;  3HJS A;  3HKP A;  1EO9 B;  2BUX A;  3I4V A;  3PCM A;  1EOA A;  3N9T A;  4ILV A;  2BUU B;  3PCF A;  3LXV M;  3PCC M;  2BUV B;  2BV0 A;  3PCG M;  3PCB M;  1YKO A;  3MV6 M;  4WHP B;  3I51 A;  3LKT A;  3PCN M;  3PCJ M;  3PCL A;  3PCA M;  3T63 A;  1EOC A;  1EOB A;  2BUM B;  1DLT A;  3PCM M;  2BUT A;  2BUR A;  4WHO B;  3PCF M;  3MI1 A;  3LMX A;  2BOY A;  1YKM B;  4WHS B;  3TH1 A;  2BUQ A;  2BUZ B;  2BUX B;  1EOA B;  2PCD A;  2BUY A;  3LKT M;  3MV4 A;  2BUW A;  3PCL M;  3T67 A;  3T63 M;  1YKN A;  2BV0 B;  1EO2 A;  2AZQ A;  1YKO B;  3PCH A;  4WHR A;  1YKP A;  3MI1 M;  3LMX M;  4WHQ A;  1YKK A;  1EOC B;  1EOB B;  3MFL A;  4WHP D;  3PCI A;  2XSV A;  5TD3 A;  2PCD M;  2BUT B;  3PCK A;  2BUR B;  3O6R A;  3HJQ A;  3HHY A;  3MV4 M;  2XSR A;  3T67 M;  3PCE A;  1DLQ A;  1YKL A;  2BUQ B;  4WHO D;  1DMH A;  3PCH M;  3I4Y A;  4ILT A;  2BUY B;  1EO9 A;  4WHS D;  3HGI A;  2BUW B;  2BUU A;  3O5U A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3LXVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations