3LXVA

Tyrosine 447 of protocatechuate 3,4-dioxygenase controls efficient progress through catalysis
Total Genus 42
204060801001201401601800510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
200
structure length
200
Chain Sequence
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLAKPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGVPMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNLIEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (14-17)S8 (126-132)AH1 (17-21)TIV1 (63-66)TVIII1 (31-34)S4 (92-96)TVIII2 (87-90)TI2 (41-44)TI5 (84-87)S1 (48-56)TIV2 (98-101)TI3 (57-60)TII1 (132-135)S2 (67-74)S3 (78-79)O1 (81-83)S5 (103-109)S11 (180-184)S6 (114-115)S7 (121-122)TI6 (116-119)S9 (135-145)TIV5 (155-158)S10 (171-177)TI7 (145-148)AH2 (149-154)3H2 (158-160)AH3 (164-169)TII2 (191-194)S12 (187-188)3H1 (23-25)TI4 (74-77)Updating...
connected with : NaN
publication title Tyrosine 447 of Protocatechuate 3,4-Dioxygenase Controls Efficient Progress Through Catalysis
rcsb
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
molecule tags Oxidoreductase/oxidoreductase
source organism Pseudomonas putida
total genus 42
structure length 200
sequence length 200
chains with identical sequence B, C
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2010-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3lxvA00
3LMXM 1YKOB 1DLMA 3MI5M 4WHRB 2BURA 1EO9A 3LMXA 3PCMM 4WHPD 3MV4M 3PCFM 2BUWA 1YKOA 1EO2B 3MI5A 4WHRA 1TMXA 4WHQB 4ILTA 3PCMA 2BUQB 3LKTM 3MV4A 3PCFA 1DLTA 2XSUA 3PCAM 4WHPB 4WHQA 2BOYA 1YKKB 3MFLM 2BUTB 3PCGM 2BUYB 3HKPA 3LKTA 2AZQA 3PCAA 3PCBM 4WHPA 1YKKA 3PCKM 3MFLA 2BUTA 3PCGA 2BV0B 3PCBA 3N9TA 3MI1M 3MV6M 3PCKA 1YKMA 1EOAB 2BUZB 2BV0A 3HHYA 2BUVB 2BUXB 3MI1A 3MV6A 3O5UA 4WHSD 1EOAA 2BUZA 3HJQA 4WHOD 3O6JA 2BUVA 2BUXA 1EO2A 4WHRF 2BUMB 3TH1A 4WHSB 2BUQA 1S9AA 2BUUB 4WHOB 1DLQA 2BUMA 3PCJM 1EOBB 1YKNB 4WHSA 3T67M 2BUYA 3PCNA 3PCHM 2BUUA 3HGIA 4WHOA 3PCJA 3HJSA 5TD3A 1YKNA 3T67A 3PCHA 2XSVA 4ILVA 3HHXA 3PCLM 2PCDA 3PCNM 3T63M 1YKPB 2XSRA 3PCDM 3PCLA 3PCEM 2BUWB 3PCIM 3O32A 3T63A 3HJ8A 1YKPA 3PCDA 1EOCB 1EOBA 3PCEA 3O6RA 3PCIA 3PCCM 1YKLB 1EOCA 3I4VA 3PCCA 1DMHA 1YKLA 2PCDM 3LXVM 3I4YA 3I51A 1YKMB 2BURB 1EO9B 3LXVA
chains in the Genus database with same CATH superfamily
3LMXM 1YKOB 1DLMA 3MI5M 4WHRB 2BURA 1EO9A 3LMXA 3PCMM 4WHPD 3MV4M 3PCFM 2BUWA 1YKOA 1EO2B 3MI5A 4WHRA 1TMXA 4WHQB 4ILTA 3PCMA 2BUQB 3LKTM 3MV4A 3PCFA 1DLTA 2XSUA 3PCAM 4WHPB 4WHQA 2BOYA 1YKKB 3MFLM 2BUTB 3PCGM 2BUYB 3HKPA 3LKTA 2AZQA 3PCAA 3PCBM 4WHPA 1YKKA 3PCKM 3MFLA 2BUTA 3PCGA 2BV0B 3PCBA 3N9TA 3MI1M 3MV6M 3PCKA 1YKMA 1EOAB 2BUZB 2BV0A 3HHYA 2BUVB 2BUXB 3MI1A 3MV6A 3O5UA 4WHSD 1EOAA 2BUZA 3HJQA 4WHOD 3O6JA 2BUVA 2BUXA 1EO2A 4WHRF 2BUMB 3TH1A 4WHSB 2BUQA 1S9AA 2BUUB 4WHOB 1DLQA 2BUMA 3PCJM 1EOBB 1YKNB 4WHSA 3T67M 2BUYA 3PCNA 3PCHM 2BUUA 3HGIA 4WHOA 3PCJA 3HJSA 5TD3A 1YKNA 3T67A 3PCHA 2XSVA 4ILVA 3HHXA 3PCLM 2PCDA 3PCNM 3T63M 1YKPB 2XSRA 3PCDM 3PCLA 3PCEM 2BUWB 3PCIM 3O32A 3T63A 3HJ8A 1YKPA 3PCDA 1EOCB 1EOBA 3PCEA 3O6RA 3PCIA 3PCCM 1YKLB 1EOCA 3I4VA 3PCCA 1DMHA 1YKLA 2PCDM 3LXVM 3I4YA 3I51A 1YKMB 2BURB 1EO9B 3LXVA
chains in the Genus database with same CATH topology
3LMXM 1YKOB 1DLMA 3MI5M 4WHRB 2BURA 1EO9A 3LMXA 3PCMM 4WHPD 3MV4M 3PCFM 2BUWA 1YKOA 1EO2B 3MI5A 4WHRA 1TMXA 4WHQB 4ILTA 3PCMA 2BUQB 3LKTM 3MV4A 3PCFA 1DLTA 2XSUA 3PCAM 4WHPB 4WHQA 2BOYA 1YKKB 3MFLM 2BUTB 3PCGM 2BUYB 3HKPA 3LKTA 2AZQA 3PCAA 3PCBM 4WHPA 1YKKA 3PCKM 3MFLA 2BUTA 3PCGA 2BV0B 3PCBA 3N9TA 3MI1M 3MV6M 3PCKA 1YKMA 1EOAB 2BUZB 2BV0A 3HHYA 2BUVB 2BUXB 3MI1A 3MV6A 3O5UA 4WHSD 1EOAA 2BUZA 3HJQA 4WHOD 3O6JA 2BUVA 2BUXA 1EO2A 4WHRF 2BUMB 3TH1A 4WHSB 2BUQA 1S9AA 2BUUB 4WHOB 1DLQA 2BUMA 3PCJM 1EOBB 1YKNB 4WHSA 3T67M 2BUYA 3PCNA 3PCHM 2BUUA 3HGIA 4WHOA 3PCJA 3HJSA 5TD3A 1YKNA 3T67A 3PCHA 2XSVA 4ILVA 3HHXA 3PCLM 2PCDA 3PCNM 3T63M 1YKPB 2XSRA 3PCDM 3PCLA 3PCEM 2BUWB 3PCIM 3O32A 3T63A 3HJ8A 1YKPA 3PCDA 1EOCB 1EOBA 3PCEA 3O6RA 3PCIA 3PCCM 1YKLB 1EOCA 3I4VA 3PCCA 1DMHA 1YKLA 2PCDM 3LXVM 3I4YA 3I51A 1YKMB 2BURB 1EO9B 3LXVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LMX M;  1YKO B;  1DLM A;  3MI5 M;  4WHR B;  2BUR A;  1EO9 A;  3LMX A;  3PCM M;  4WHP D;  3MV4 M;  3PCF M;  2BUW A;  1YKO A;  1EO2 B;  3MI5 A;  4WHR A;  1TMX A;  4WHQ B;  4ILT A;  3PCM A;  2BUQ B;  3LKT M;  3MV4 A;  3PCF A;  1DLT A;  2XSU A;  3PCA M;  4WHP B;  4WHQ A;  2BOY A;  1YKK B;  3MFL M;  2BUT B;  3PCG M;  2BUY B;  3HKP A;  3LKT A;  2AZQ A;  3PCA A;  3PCB M;  4WHP A;  1YKK A;  3PCK M;  3MFL A;  2BUT A;  3PCG A;  2BV0 B;  3PCB A;  3N9T A;  3MI1 M;  3MV6 M;  3PCK A;  1YKM A;  1EOA B;  2BUZ B;  2BV0 A;  3HHY A;  2BUV B;  2BUX B;  3MI1 A;  3MV6 A;  3O5U A;  4WHS D;  1EOA A;  2BUZ A;  3HJQ A;  4WHO D;  3O6J A;  2BUV A;  2BUX A;  1EO2 A;  4WHR F;  2BUM B;  3TH1 A;  4WHS B;  2BUQ A;  1S9A A;  2BUU B;  4WHO B;  1DLQ A;  2BUM A;  3PCJ M;  1EOB B;  1YKN B;  4WHS A;  3T67 M;  2BUY A;  3PCN A;  3PCH M;  2BUU A;  3HGI A;  4WHO A;  3PCJ A;  3HJS A;  5TD3 A;  1YKN A;  3T67 A;  3PCH A;  2XSV A;  4ILV A;  3HHX A;  3PCL M;  2PCD A;  3PCN M;  3T63 M;  1YKP B;  2XSR A;  3PCD M;  3PCL A;  3PCE M;  2BUW B;  3PCI M;  3O32 A;  3T63 A;  3HJ8 A;  1YKP A;  3PCD A;  1EOC B;  1EOB A;  3PCE A;  3O6R A;  3PCI A;  3PCC M;  1YKL B;  1EOC A;  3I4V A;  3PCC A;  1DMH A;  1YKL A;  2PCD M;  3LXV M;  3I4Y A;  3I51 A;  1YKM B;  2BUR B;  1EO9 B;  3LXV A; 
#chains in the Genus database with same CATH topology
 3LMX M;  1YKO B;  1DLM A;  3MI5 M;  4WHR B;  2BUR A;  1EO9 A;  3LMX A;  3PCM M;  4WHP D;  3MV4 M;  3PCF M;  2BUW A;  1YKO A;  1EO2 B;  3MI5 A;  4WHR A;  1TMX A;  4WHQ B;  4ILT A;  3PCM A;  2BUQ B;  3LKT M;  3MV4 A;  3PCF A;  1DLT A;  2XSU A;  3PCA M;  4WHP B;  4WHQ A;  2BOY A;  1YKK B;  3MFL M;  2BUT B;  3PCG M;  2BUY B;  3HKP A;  3LKT A;  2AZQ A;  3PCA A;  3PCB M;  4WHP A;  1YKK A;  3PCK M;  3MFL A;  2BUT A;  3PCG A;  2BV0 B;  3PCB A;  3N9T A;  3MI1 M;  3MV6 M;  3PCK A;  1YKM A;  1EOA B;  2BUZ B;  2BV0 A;  3HHY A;  2BUV B;  2BUX B;  3MI1 A;  3MV6 A;  3O5U A;  4WHS D;  1EOA A;  2BUZ A;  3HJQ A;  4WHO D;  3O6J A;  2BUV A;  2BUX A;  1EO2 A;  4WHR F;  2BUM B;  3TH1 A;  4WHS B;  2BUQ A;  1S9A A;  2BUU B;  4WHO B;  1DLQ A;  2BUM A;  3PCJ M;  1EOB B;  1YKN B;  4WHS A;  3T67 M;  2BUY A;  3PCN A;  3PCH M;  2BUU A;  3HGI A;  4WHO A;  3PCJ A;  3HJS A;  5TD3 A;  1YKN A;  3T67 A;  3PCH A;  2XSV A;  4ILV A;  3HHX A;  3PCL M;  2PCD A;  3PCN M;  3T63 M;  1YKP B;  2XSR A;  3PCD M;  3PCL A;  3PCE M;  2BUW B;  3PCI M;  3O32 A;  3T63 A;  3HJ8 A;  1YKP A;  3PCD A;  1EOC B;  1EOB A;  3PCE A;  3O6R A;  3PCI A;  3PCC M;  1YKL B;  1EOC A;  3I4V A;  3PCC A;  1DMH A;  1YKL A;  2PCD M;  3LXV M;  3I4Y A;  3I51 A;  1YKM B;  2BUR B;  1EO9 B;  3LXV A; 
#chains in the Genus database with same CATH homology
 3LMX M;  1YKO B;  1DLM A;  3MI5 M;  4WHR B;  2BUR A;  1EO9 A;  3LMX A;  3PCM M;  4WHP D;  3MV4 M;  3PCF M;  2BUW A;  1YKO A;  1EO2 B;  3MI5 A;  4WHR A;  1TMX A;  4WHQ B;  4ILT A;  3PCM A;  2BUQ B;  3LKT M;  3MV4 A;  3PCF A;  1DLT A;  2XSU A;  3PCA M;  4WHP B;  4WHQ A;  2BOY A;  1YKK B;  3MFL M;  2BUT B;  3PCG M;  2BUY B;  3HKP A;  3LKT A;  2AZQ A;  3PCA A;  3PCB M;  4WHP A;  1YKK A;  3PCK M;  3MFL A;  2BUT A;  3PCG A;  2BV0 B;  3PCB A;  3N9T A;  3MI1 M;  3MV6 M;  3PCK A;  1YKM A;  1EOA B;  2BUZ B;  2BV0 A;  3HHY A;  2BUV B;  2BUX B;  3MI1 A;  3MV6 A;  3O5U A;  4WHS D;  1EOA A;  2BUZ A;  3HJQ A;  4WHO D;  3O6J A;  2BUV A;  2BUX A;  1EO2 A;  4WHR F;  2BUM B;  3TH1 A;  4WHS B;  2BUQ A;  1S9A A;  2BUU B;  4WHO B;  1DLQ A;  2BUM A;  3PCJ M;  1EOB B;  1YKN B;  4WHS A;  3T67 M;  2BUY A;  3PCN A;  3PCH M;  2BUU A;  3HGI A;  4WHO A;  3PCJ A;  3HJS A;  5TD3 A;  1YKN A;  3T67 A;  3PCH A;  2XSV A;  4ILV A;  3HHX A;  3PCL M;  2PCD A;  3PCN M;  3T63 M;  1YKP B;  2XSR A;  3PCD M;  3PCL A;  3PCE M;  2BUW B;  3PCI M;  3O32 A;  3T63 A;  3HJ8 A;  1YKP A;  3PCD A;  1EOC B;  1EOB A;  3PCE A;  3O6R A;  3PCI A;  3PCC M;  1YKL B;  1EOC A;  3I4V A;  3PCC A;  1DMH A;  1YKL A;  2PCD M;  3LXV M;  3I4Y A;  3I51 A;  1YKM B;  2BUR B;  1EO9 B;  3LXV A; 
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