3LXVM

Tyrosine 447 of protocatechuate 3,4-dioxygenase controls efficient progress through catalysis
Total Genus 60

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
238
structure length
238
Chain Sequence
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPHPWRNGPNDWRPAHIHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Tyrosine 447 of Protocatechuate 3,4-Dioxygenase Controls Efficient Progress Through Catalysis
rcsb
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
molecule tags Oxidoreductase/oxidoreductase
source organism Pseudomonas putida
total genus 60
structure length 238
sequence length 238
chains with identical sequence N, O
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2010-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00775 Dioxygenase_C Dioxygenase
M PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3lxvM00
4WHSD 3T63M 2BUVA 1DMHA 3HJ8A 2BURA 3I51A 3O6JA 4WHRB 4WHOB 3T67M 3PCMA 3LMXA 2XSRA 3PCEA 3MI5M 3PCDM 3MI1M 2BUTB 3PCIM 4WHOA 3TH1A 3HHYA 3PCFA 4WHOD 1DLQA 1YKMB 2BUTA 3PCAA 4ILVA 3T63A 4ILTA 2BUVB 2BV0B 2BURB 3T67A 1YKOB 1YKMA 1YKPA 3HGIA 3PCLA 2BOYA 3PCIA 2BV0A 3LKTM 1YKOA 1EOAA 3MFLM 3PCLM 3PCHM 5TD3A 3PCGM 4WHRF 2BUYB 1YKNB 3PCKA 1YKPB 1EO9A 2BUXB 2BUYA 3LKTA 1YKNA 3O5UA 3MV4M 3MFLA 3HJQA 2BUZB 1EOAB 3PCCM 1YKLB 3PCKM 3PCHA 2BUXA 3N9TA 3PCGA 2BUZA 3HJSA 3I4VA 3HHXA 1YKLA 1EO2B 1EO9B 2BUWB 3PCBM 3O32A 3MV4A 1DLTA 1EO2A 3PCCA 2BUWA 3MV6M 1YKKB 2BUMB 2BUUB 3LXVM 3I4YA 2AZQA 3PCNM 2PCDM 1TMXA 3O6RA 1YKKA 2BUMA 2BUUA 2XSUA 3PCBA 3PCJM 1EOBA 4WHRA 3PCMM 3LMXM 3MV6A 3PCEM 4WHPB 4WHQB 4WHSB 1DLMA 1EOCB 3HKPA 3LXVA 2BUQB 3PCNA 2XSVA 2PCDA 3PCFM 4WHPA 4WHQA 1S9AA 4WHSA 3MI5A 1EOCA 3PCDA 3PCJA 2BUQA 3MI1A 3PCAM 4WHPD 1EOBB
chains in the Genus database with same CATH superfamily
4WHSD 3T63M 2BUVA 1DMHA 3HJ8A 2BURA 3I51A 3O6JA 4WHRB 4WHOB 3T67M 3PCMA 3LMXA 2XSRA 3PCEA 3MI5M 3PCDM 3MI1M 2BUTB 3PCIM 4WHOA 3TH1A 3HHYA 3PCFA 4WHOD 1DLQA 1YKMB 2BUTA 3PCAA 4ILVA 3T63A 4ILTA 2BUVB 2BV0B 2BURB 3T67A 1YKOB 1YKMA 1YKPA 3HGIA 3PCLA 2BOYA 3PCIA 2BV0A 3LKTM 1YKOA 1EOAA 3MFLM 3PCLM 3PCHM 5TD3A 3PCGM 4WHRF 2BUYB 1YKNB 3PCKA 1YKPB 1EO9A 2BUXB 2BUYA 3LKTA 1YKNA 3O5UA 3MV4M 3MFLA 3HJQA 2BUZB 1EOAB 3PCCM 1YKLB 3PCKM 3PCHA 2BUXA 3N9TA 3PCGA 2BUZA 3HJSA 3I4VA 3HHXA 1YKLA 1EO2B 1EO9B 2BUWB 3PCBM 3O32A 3MV4A 1DLTA 1EO2A 3PCCA 2BUWA 3MV6M 1YKKB 2BUMB 2BUUB 3LXVM 3I4YA 2AZQA 3PCNM 2PCDM 1TMXA 3O6RA 1YKKA 2BUMA 2BUUA 2XSUA 3PCBA 3PCJM 1EOBA 4WHRA 3PCMM 3LMXM 3MV6A 3PCEM 4WHPB 4WHQB 4WHSB 1DLMA 1EOCB 3HKPA 3LXVA 2BUQB 3PCNA 2XSVA 2PCDA 3PCFM 4WHPA 4WHQA 1S9AA 4WHSA 3MI5A 1EOCA 3PCDA 3PCJA 2BUQA 3MI1A 3PCAM 4WHPD 1EOBB
chains in the Genus database with same CATH topology
4WHSD 3T63M 2BUVA 1DMHA 3HJ8A 2BURA 3I51A 3O6JA 4WHRB 4WHOB 3T67M 3PCMA 3LMXA 2XSRA 3PCEA 3MI5M 3PCDM 3MI1M 2BUTB 3PCIM 4WHOA 3TH1A 3HHYA 3PCFA 4WHOD 1DLQA 1YKMB 2BUTA 3PCAA 4ILVA 3T63A 4ILTA 2BUVB 2BV0B 2BURB 3T67A 1YKOB 1YKMA 1YKPA 3HGIA 3PCLA 2BOYA 3PCIA 2BV0A 3LKTM 1YKOA 1EOAA 3MFLM 3PCLM 3PCHM 5TD3A 3PCGM 4WHRF 2BUYB 1YKNB 3PCKA 1YKPB 1EO9A 2BUXB 2BUYA 3LKTA 1YKNA 3O5UA 3MV4M 3MFLA 3HJQA 2BUZB 1EOAB 3PCCM 1YKLB 3PCKM 3PCHA 2BUXA 3N9TA 3PCGA 2BUZA 3HJSA 3I4VA 3HHXA 1YKLA 1EO2B 1EO9B 2BUWB 3PCBM 3O32A 3MV4A 1DLTA 1EO2A 3PCCA 2BUWA 3MV6M 1YKKB 2BUMB 2BUUB 3LXVM 3I4YA 2AZQA 3PCNM 2PCDM 1TMXA 3O6RA 1YKKA 2BUMA 2BUUA 2XSUA 3PCBA 3PCJM 1EOBA 4WHRA 3PCMM 3LMXM 3MV6A 3PCEM 4WHPB 4WHQB 4WHSB 1DLMA 1EOCB 3HKPA 3LXVA 2BUQB 3PCNA 2XSVA 2PCDA 3PCFM 4WHPA 4WHQA 1S9AA 4WHSA 3MI5A 1EOCA 3PCDA 3PCJA 2BUQA 3MI1A 3PCAM 4WHPD 1EOBB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WHS D;  3T63 M;  2BUV A;  1DMH A;  3HJ8 A;  2BUR A;  3I51 A;  3O6J A;  4WHR B;  4WHO B;  3T67 M;  3PCM A;  3LMX A;  2XSR A;  3PCE A;  3MI5 M;  3PCD M;  3MI1 M;  2BUT B;  3PCI M;  4WHO A;  3TH1 A;  3HHY A;  3PCF A;  4WHO D;  1DLQ A;  1YKM B;  2BUT A;  3PCA A;  4ILV A;  3T63 A;  4ILT A;  2BUV B;  2BV0 B;  2BUR B;  3T67 A;  1YKO B;  1YKM A;  1YKP A;  3HGI A;  3PCL A;  2BOY A;  3PCI A;  2BV0 A;  3LKT M;  1YKO A;  1EOA A;  3MFL M;  3PCL M;  3PCH M;  5TD3 A;  3PCG M;  4WHR F;  2BUY B;  1YKN B;  3PCK A;  1YKP B;  1EO9 A;  2BUX B;  2BUY A;  3LKT A;  1YKN A;  3O5U A;  3MV4 M;  3MFL A;  3HJQ A;  2BUZ B;  1EOA B;  3PCC M;  1YKL B;  3PCK M;  3PCH A;  2BUX A;  3N9T A;  3PCG A;  2BUZ A;  3HJS A;  3I4V A;  3HHX A;  1YKL A;  1EO2 B;  1EO9 B;  2BUW B;  3PCB M;  3O32 A;  3MV4 A;  1DLT A;  1EO2 A;  3PCC A;  2BUW A;  3MV6 M;  1YKK B;  2BUM B;  2BUU B;  3LXV M;  3I4Y A;  2AZQ A;  3PCN M;  2PCD M;  1TMX A;  3O6R A;  1YKK A;  2BUM A;  2BUU A;  2XSU A;  3PCB A;  3PCJ M;  1EOB A;  4WHR A;  3PCM M;  3LMX M;  3MV6 A;  3PCE M;  4WHP B;  4WHQ B;  4WHS B;  1DLM A;  1EOC B;  3HKP A;  3LXV A;  2BUQ B;  3PCN A;  2XSV A;  2PCD A;  3PCF M;  4WHP A;  4WHQ A;  1S9A A;  4WHS A;  3MI5 A;  1EOC A;  3PCD A;  3PCJ A;  2BUQ A;  3MI1 A;  3PCA M;  4WHP D;  1EOB B; 
#chains in the Genus database with same CATH topology
 4WHS D;  3T63 M;  2BUV A;  1DMH A;  3HJ8 A;  2BUR A;  3I51 A;  3O6J A;  4WHR B;  4WHO B;  3T67 M;  3PCM A;  3LMX A;  2XSR A;  3PCE A;  3MI5 M;  3PCD M;  3MI1 M;  2BUT B;  3PCI M;  4WHO A;  3TH1 A;  3HHY A;  3PCF A;  4WHO D;  1DLQ A;  1YKM B;  2BUT A;  3PCA A;  4ILV A;  3T63 A;  4ILT A;  2BUV B;  2BV0 B;  2BUR B;  3T67 A;  1YKO B;  1YKM A;  1YKP A;  3HGI A;  3PCL A;  2BOY A;  3PCI A;  2BV0 A;  3LKT M;  1YKO A;  1EOA A;  3MFL M;  3PCL M;  3PCH M;  5TD3 A;  3PCG M;  4WHR F;  2BUY B;  1YKN B;  3PCK A;  1YKP B;  1EO9 A;  2BUX B;  2BUY A;  3LKT A;  1YKN A;  3O5U A;  3MV4 M;  3MFL A;  3HJQ A;  2BUZ B;  1EOA B;  3PCC M;  1YKL B;  3PCK M;  3PCH A;  2BUX A;  3N9T A;  3PCG A;  2BUZ A;  3HJS A;  3I4V A;  3HHX A;  1YKL A;  1EO2 B;  1EO9 B;  2BUW B;  3PCB M;  3O32 A;  3MV4 A;  1DLT A;  1EO2 A;  3PCC A;  2BUW A;  3MV6 M;  1YKK B;  2BUM B;  2BUU B;  3LXV M;  3I4Y A;  2AZQ A;  3PCN M;  2PCD M;  1TMX A;  3O6R A;  1YKK A;  2BUM A;  2BUU A;  2XSU A;  3PCB A;  3PCJ M;  1EOB A;  4WHR A;  3PCM M;  3LMX M;  3MV6 A;  3PCE M;  4WHP B;  4WHQ B;  4WHS B;  1DLM A;  1EOC B;  3HKP A;  3LXV A;  2BUQ B;  3PCN A;  2XSV A;  2PCD A;  3PCF M;  4WHP A;  4WHQ A;  1S9A A;  4WHS A;  3MI5 A;  1EOC A;  3PCD A;  3PCJ A;  2BUQ A;  3MI1 A;  3PCA M;  4WHP D;  1EOB B; 
#chains in the Genus database with same CATH homology
 4WHS D;  3T63 M;  2BUV A;  1DMH A;  3HJ8 A;  2BUR A;  3I51 A;  3O6J A;  4WHR B;  4WHO B;  3T67 M;  3PCM A;  3LMX A;  2XSR A;  3PCE A;  3MI5 M;  3PCD M;  3MI1 M;  2BUT B;  3PCI M;  4WHO A;  3TH1 A;  3HHY A;  3PCF A;  4WHO D;  1DLQ A;  1YKM B;  2BUT A;  3PCA A;  4ILV A;  3T63 A;  4ILT A;  2BUV B;  2BV0 B;  2BUR B;  3T67 A;  1YKO B;  1YKM A;  1YKP A;  3HGI A;  3PCL A;  2BOY A;  3PCI A;  2BV0 A;  3LKT M;  1YKO A;  1EOA A;  3MFL M;  3PCL M;  3PCH M;  5TD3 A;  3PCG M;  4WHR F;  2BUY B;  1YKN B;  3PCK A;  1YKP B;  1EO9 A;  2BUX B;  2BUY A;  3LKT A;  1YKN A;  3O5U A;  3MV4 M;  3MFL A;  3HJQ A;  2BUZ B;  1EOA B;  3PCC M;  1YKL B;  3PCK M;  3PCH A;  2BUX A;  3N9T A;  3PCG A;  2BUZ A;  3HJS A;  3I4V A;  3HHX A;  1YKL A;  1EO2 B;  1EO9 B;  2BUW B;  3PCB M;  3O32 A;  3MV4 A;  1DLT A;  1EO2 A;  3PCC A;  2BUW A;  3MV6 M;  1YKK B;  2BUM B;  2BUU B;  3LXV M;  3I4Y A;  2AZQ A;  3PCN M;  2PCD M;  1TMX A;  3O6R A;  1YKK A;  2BUM A;  2BUU A;  2XSU A;  3PCB A;  3PCJ M;  1EOB A;  4WHR A;  3PCM M;  3LMX M;  3MV6 A;  3PCE M;  4WHP B;  4WHQ B;  4WHS B;  1DLM A;  1EOC B;  3HKP A;  3LXV A;  2BUQ B;  3PCN A;  2XSV A;  2PCD A;  3PCF M;  4WHP A;  4WHQ A;  1S9A A;  4WHS A;  3MI5 A;  1EOC A;  3PCD A;  3PCJ A;  2BUQ A;  3MI1 A;  3PCA M;  4WHP D;  1EOB B; 
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