3MFLM

Axial ligand swapping in double mutant maintains intradiol-cleavage chemistry in protocatechuate 3,4-dioxygenase
Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
238
structure length
238
Chain Sequence
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPHPWRNGPNDWRPAHIYFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
rcsb
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
molecule tags Oxidoreductase
source organism Pseudomonas putida
total genus 56
structure length 238
sequence length 238
chains with identical sequence N, O
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2010-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00775 Dioxygenase_C Dioxygenase
M PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3mflM00
3HHXA 4WHRF 3HHYA 2BUTB 3PCKM 2BURA 3PCKA 4WHPB 3MFLM 3T63M 1YKNA 2BUYA 3MFLA 3T63A 5TD3A 1DMHA 3HJSA 1EO9B 1EOAB 3HGIA 4WHPD 3T67M 4WHRB 1YKKB 3T67A 2BV0B 2XSVA 3MV6M 4WHPA 2BUWB 3LMXM 3PCCA 3PCJM 1TMXA 3MV6A 1EO2A 4WHOB 3LMXA 3PCJA 2XSUA 3TH1A 2XSRA 3MV4M 1DLQA 3MV4A 1YKLB 1DLTA 1YKKA 4WHRA 4WHOD 1EOBA 4WHSB 3PCLM 3PCEM 1S9AA 3PCLA 1YKPB 1YKMA 3I51A 3PCEA 3PCHM 2BUZB 2BUQB 3MI5M 3PCHA 3PCGM 2BUTA 1YKOB 3PCGA 4WHSD 1DLMA 3I4VA 2BUMB 1YKLA 3PCMM 2PCDM 3PCNM 4WHSA 2PCDA 3PCNA 1EO9A 1EOAA 1EOCB 3O6RA 1YKNB 2BUVB 4ILTA 3O32A 1YKOA 2BUXB 2BV0A 3N9TA 3LXVM 4WHQB 2BUWA 2BOYA 3LXVA 4WHOA 3PCDM 4ILVA 3MI5A 3PCDA 3LKTM 3MI1M 3HJ8A 2BUUB 3LKTA 2AZQA 3HJQA 3MI1A 1EOCA 1EO2B 3O6JA 2BUVA 3PCAM 3PCMA 2BUXA 2BURB 3PCAA 1YKPA 4WHQA 3HKPA 3PCBM 2BUYB 2BUZA 3PCFM 2BUQA 3PCIM 3I4YA 3PCBA 3PCFA 3PCIA 1EOBB 3O5UA 3PCCM 2BUUA 1YKMB 2BUMA
chains in the Genus database with same CATH superfamily
3HHXA 4WHRF 3HHYA 2BUTB 3PCKM 2BURA 3PCKA 4WHPB 3MFLM 3T63M 1YKNA 2BUYA 3MFLA 3T63A 5TD3A 1DMHA 3HJSA 1EO9B 1EOAB 3HGIA 4WHPD 3T67M 4WHRB 1YKKB 3T67A 2BV0B 2XSVA 3MV6M 4WHPA 2BUWB 3LMXM 3PCCA 3PCJM 1TMXA 3MV6A 1EO2A 4WHOB 3LMXA 3PCJA 2XSUA 3TH1A 2XSRA 3MV4M 1DLQA 3MV4A 1YKLB 1DLTA 1YKKA 4WHRA 4WHOD 1EOBA 4WHSB 3PCLM 3PCEM 1S9AA 3PCLA 1YKPB 1YKMA 3I51A 3PCEA 3PCHM 2BUZB 2BUQB 3MI5M 3PCHA 3PCGM 2BUTA 1YKOB 3PCGA 4WHSD 1DLMA 3I4VA 2BUMB 1YKLA 3PCMM 2PCDM 3PCNM 4WHSA 2PCDA 3PCNA 1EO9A 1EOAA 1EOCB 3O6RA 1YKNB 2BUVB 4ILTA 3O32A 1YKOA 2BUXB 2BV0A 3N9TA 3LXVM 4WHQB 2BUWA 2BOYA 3LXVA 4WHOA 3PCDM 4ILVA 3MI5A 3PCDA 3LKTM 3MI1M 3HJ8A 2BUUB 3LKTA 2AZQA 3HJQA 3MI1A 1EOCA 1EO2B 3O6JA 2BUVA 3PCAM 3PCMA 2BUXA 2BURB 3PCAA 1YKPA 4WHQA 3HKPA 3PCBM 2BUYB 2BUZA 3PCFM 2BUQA 3PCIM 3I4YA 3PCBA 3PCFA 3PCIA 1EOBB 3O5UA 3PCCM 2BUUA 1YKMB 2BUMA
chains in the Genus database with same CATH topology
3HHXA 4WHRF 3HHYA 2BUTB 3PCKM 2BURA 3PCKA 4WHPB 3MFLM 3T63M 1YKNA 2BUYA 3MFLA 3T63A 5TD3A 1DMHA 3HJSA 1EO9B 1EOAB 3HGIA 4WHPD 3T67M 4WHRB 1YKKB 3T67A 2BV0B 2XSVA 3MV6M 4WHPA 2BUWB 3LMXM 3PCCA 3PCJM 1TMXA 3MV6A 1EO2A 4WHOB 3LMXA 3PCJA 2XSUA 3TH1A 2XSRA 3MV4M 1DLQA 3MV4A 1YKLB 1DLTA 1YKKA 4WHRA 4WHOD 1EOBA 4WHSB 3PCLM 3PCEM 1S9AA 3PCLA 1YKPB 1YKMA 3I51A 3PCEA 3PCHM 2BUZB 2BUQB 3MI5M 3PCHA 3PCGM 2BUTA 1YKOB 3PCGA 4WHSD 1DLMA 3I4VA 2BUMB 1YKLA 3PCMM 2PCDM 3PCNM 4WHSA 2PCDA 3PCNA 1EO9A 1EOAA 1EOCB 3O6RA 1YKNB 2BUVB 4ILTA 3O32A 1YKOA 2BUXB 2BV0A 3N9TA 3LXVM 4WHQB 2BUWA 2BOYA 3LXVA 4WHOA 3PCDM 4ILVA 3MI5A 3PCDA 3LKTM 3MI1M 3HJ8A 2BUUB 3LKTA 2AZQA 3HJQA 3MI1A 1EOCA 1EO2B 3O6JA 2BUVA 3PCAM 3PCMA 2BUXA 2BURB 3PCAA 1YKPA 4WHQA 3HKPA 3PCBM 2BUYB 2BUZA 3PCFM 2BUQA 3PCIM 3I4YA 3PCBA 3PCFA 3PCIA 1EOBB 3O5UA 3PCCM 2BUUA 1YKMB 2BUMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HHX A;  4WHR F;  3HHY A;  2BUT B;  3PCK M;  2BUR A;  3PCK A;  4WHP B;  3MFL M;  3T63 M;  1YKN A;  2BUY A;  3MFL A;  3T63 A;  5TD3 A;  1DMH A;  3HJS A;  1EO9 B;  1EOA B;  3HGI A;  4WHP D;  3T67 M;  4WHR B;  1YKK B;  3T67 A;  2BV0 B;  2XSV A;  3MV6 M;  4WHP A;  2BUW B;  3LMX M;  3PCC A;  3PCJ M;  1TMX A;  3MV6 A;  1EO2 A;  4WHO B;  3LMX A;  3PCJ A;  2XSU A;  3TH1 A;  2XSR A;  3MV4 M;  1DLQ A;  3MV4 A;  1YKL B;  1DLT A;  1YKK A;  4WHR A;  4WHO D;  1EOB A;  4WHS B;  3PCL M;  3PCE M;  1S9A A;  3PCL A;  1YKP B;  1YKM A;  3I51 A;  3PCE A;  3PCH M;  2BUZ B;  2BUQ B;  3MI5 M;  3PCH A;  3PCG M;  2BUT A;  1YKO B;  3PCG A;  4WHS D;  1DLM A;  3I4V A;  2BUM B;  1YKL A;  3PCM M;  2PCD M;  3PCN M;  4WHS A;  2PCD A;  3PCN A;  1EO9 A;  1EOA A;  1EOC B;  3O6R A;  1YKN B;  2BUV B;  4ILT A;  3O32 A;  1YKO A;  2BUX B;  2BV0 A;  3N9T A;  3LXV M;  4WHQ B;  2BUW A;  2BOY A;  3LXV A;  4WHO A;  3PCD M;  4ILV A;  3MI5 A;  3PCD A;  3LKT M;  3MI1 M;  3HJ8 A;  2BUU B;  3LKT A;  2AZQ A;  3HJQ A;  3MI1 A;  1EOC A;  1EO2 B;  3O6J A;  2BUV A;  3PCA M;  3PCM A;  2BUX A;  2BUR B;  3PCA A;  1YKP A;  4WHQ A;  3HKP A;  3PCB M;  2BUY B;  2BUZ A;  3PCF M;  2BUQ A;  3PCI M;  3I4Y A;  3PCB A;  3PCF A;  3PCI A;  1EOB B;  3O5U A;  3PCC M;  2BUU A;  1YKM B;  2BUM A; 
#chains in the Genus database with same CATH topology
 3HHX A;  4WHR F;  3HHY A;  2BUT B;  3PCK M;  2BUR A;  3PCK A;  4WHP B;  3MFL M;  3T63 M;  1YKN A;  2BUY A;  3MFL A;  3T63 A;  5TD3 A;  1DMH A;  3HJS A;  1EO9 B;  1EOA B;  3HGI A;  4WHP D;  3T67 M;  4WHR B;  1YKK B;  3T67 A;  2BV0 B;  2XSV A;  3MV6 M;  4WHP A;  2BUW B;  3LMX M;  3PCC A;  3PCJ M;  1TMX A;  3MV6 A;  1EO2 A;  4WHO B;  3LMX A;  3PCJ A;  2XSU A;  3TH1 A;  2XSR A;  3MV4 M;  1DLQ A;  3MV4 A;  1YKL B;  1DLT A;  1YKK A;  4WHR A;  4WHO D;  1EOB A;  4WHS B;  3PCL M;  3PCE M;  1S9A A;  3PCL A;  1YKP B;  1YKM A;  3I51 A;  3PCE A;  3PCH M;  2BUZ B;  2BUQ B;  3MI5 M;  3PCH A;  3PCG M;  2BUT A;  1YKO B;  3PCG A;  4WHS D;  1DLM A;  3I4V A;  2BUM B;  1YKL A;  3PCM M;  2PCD M;  3PCN M;  4WHS A;  2PCD A;  3PCN A;  1EO9 A;  1EOA A;  1EOC B;  3O6R A;  1YKN B;  2BUV B;  4ILT A;  3O32 A;  1YKO A;  2BUX B;  2BV0 A;  3N9T A;  3LXV M;  4WHQ B;  2BUW A;  2BOY A;  3LXV A;  4WHO A;  3PCD M;  4ILV A;  3MI5 A;  3PCD A;  3LKT M;  3MI1 M;  3HJ8 A;  2BUU B;  3LKT A;  2AZQ A;  3HJQ A;  3MI1 A;  1EOC A;  1EO2 B;  3O6J A;  2BUV A;  3PCA M;  3PCM A;  2BUX A;  2BUR B;  3PCA A;  1YKP A;  4WHQ A;  3HKP A;  3PCB M;  2BUY B;  2BUZ A;  3PCF M;  2BUQ A;  3PCI M;  3I4Y A;  3PCB A;  3PCF A;  3PCI A;  1EOB B;  3O5U A;  3PCC M;  2BUU A;  1YKM B;  2BUM A; 
#chains in the Genus database with same CATH homology
 3HHX A;  4WHR F;  3HHY A;  2BUT B;  3PCK M;  2BUR A;  3PCK A;  4WHP B;  3MFL M;  3T63 M;  1YKN A;  2BUY A;  3MFL A;  3T63 A;  5TD3 A;  1DMH A;  3HJS A;  1EO9 B;  1EOA B;  3HGI A;  4WHP D;  3T67 M;  4WHR B;  1YKK B;  3T67 A;  2BV0 B;  2XSV A;  3MV6 M;  4WHP A;  2BUW B;  3LMX M;  3PCC A;  3PCJ M;  1TMX A;  3MV6 A;  1EO2 A;  4WHO B;  3LMX A;  3PCJ A;  2XSU A;  3TH1 A;  2XSR A;  3MV4 M;  1DLQ A;  3MV4 A;  1YKL B;  1DLT A;  1YKK A;  4WHR A;  4WHO D;  1EOB A;  4WHS B;  3PCL M;  3PCE M;  1S9A A;  3PCL A;  1YKP B;  1YKM A;  3I51 A;  3PCE A;  3PCH M;  2BUZ B;  2BUQ B;  3MI5 M;  3PCH A;  3PCG M;  2BUT A;  1YKO B;  3PCG A;  4WHS D;  1DLM A;  3I4V A;  2BUM B;  1YKL A;  3PCM M;  2PCD M;  3PCN M;  4WHS A;  2PCD A;  3PCN A;  1EO9 A;  1EOA A;  1EOC B;  3O6R A;  1YKN B;  2BUV B;  4ILT A;  3O32 A;  1YKO A;  2BUX B;  2BV0 A;  3N9T A;  3LXV M;  4WHQ B;  2BUW A;  2BOY A;  3LXV A;  4WHO A;  3PCD M;  4ILV A;  3MI5 A;  3PCD A;  3LKT M;  3MI1 M;  3HJ8 A;  2BUU B;  3LKT A;  2AZQ A;  3HJQ A;  3MI1 A;  1EOC A;  1EO2 B;  3O6J A;  2BUV A;  3PCA M;  3PCM A;  2BUX A;  2BUR B;  3PCA A;  1YKP A;  4WHQ A;  3HKP A;  3PCB M;  2BUY B;  2BUZ A;  3PCF M;  2BUQ A;  3PCI M;  3I4Y A;  3PCB A;  3PCF A;  3PCI A;  1EOB B;  3O5U A;  3PCC M;  2BUU A;  1YKM B;  2BUM A; 
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