3MI5M

Axial ligand swapping in double mutant maintains intradiol-cleavage chemistry in protocatechuate 3,4-dioxygenase
Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
238
structure length
238
Chain Sequence
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPHPWRNGPNDWRPAHIYFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
rcsb
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
molecule tags Oxidoreductase
source organism Pseudomonas putida
total genus 56
structure length 238
sequence length 238
chains with identical sequence N, O, P, Q, R
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2010-04-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00775 Dioxygenase_C Dioxygenase
M PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3mi5M00
3PCGM 3PCIA 3HHYA 2BUUA 1YKNB 3HGIA 2BUYB 3TH1A 3PCMA 4WHOA 3HJQA 3PCHM 3PCDA 3O6RA 1YKPA 3PCKM 4ILTA 3MV6M 4WHPB 1EO9A 3LMXM 2BUXA 3T63A 4WHSD 1YKOA 2BUTB 1S9AA 4WHOB 3PCBM 2BUMA 3LXVM 1EO2B 3MI5A 1YKPB 1EOCB 3PCIM 4WHPA 3PCAA 1EO9B 1YKLB 2BUXB 2BURA 4WHQB 1YKOB 3PCMM 2BUTA 3PCDM 3PCLA 2BUMB 3O6JA 1EO2A 2BUQB 2BUWB 3HJ8A 3LKTA 1EOCA 3O5UA 1YKLA 3PCCM 1YKMA 1EOAA 3N9TA 3O32A 3PCCA 3T63M 2BURB 4WHQA 1YKKA 3MI1A 3MI5M 2XSUA 2BUQA 2BUWA 2BV0B 2BUVA 3PCAM 3PCFA 4WHRF 5TD3A 1YKMB 1EOAB 1EOBB 2PCDA 3PCEA 3MV4A 3I4VA 3HHXA 1YKKB 4ILVA 3PCLM 3PCNA 4WHSB 2BV0A 3PCJA 3HJSA 3LKTM 2BUVB 3T67A 1DMHA 2XSRA 1DLQA 1EOBA 4WHPD 2AZQA 3MFLA 3MI1M 3PCGA 4WHSA 1DLMA 4WHRB 1DLTA 3PCFM 4WHOD 3I4YA 2XSVA 2PCDM 2BUZB 3PCHA 3PCEM 3MV4M 2BOYA 3PCKA 3MV6A 3PCNM 3I51A 3PCJM 1TMXA 4WHRA 3HKPA 3LMXA 2BUUB 1YKNA 2BUYA 3T67M 3PCBA 3LXVA 2BUZA 3MFLM
chains in the Genus database with same CATH superfamily
3PCGM 3PCIA 3HHYA 2BUUA 1YKNB 3HGIA 2BUYB 3TH1A 3PCMA 4WHOA 3HJQA 3PCHM 3PCDA 3O6RA 1YKPA 3PCKM 4ILTA 3MV6M 4WHPB 1EO9A 3LMXM 2BUXA 3T63A 4WHSD 1YKOA 2BUTB 1S9AA 4WHOB 3PCBM 2BUMA 3LXVM 1EO2B 3MI5A 1YKPB 1EOCB 3PCIM 4WHPA 3PCAA 1EO9B 1YKLB 2BUXB 2BURA 4WHQB 1YKOB 3PCMM 2BUTA 3PCDM 3PCLA 2BUMB 3O6JA 1EO2A 2BUQB 2BUWB 3HJ8A 3LKTA 1EOCA 3O5UA 1YKLA 3PCCM 1YKMA 1EOAA 3N9TA 3O32A 3PCCA 3T63M 2BURB 4WHQA 1YKKA 3MI1A 3MI5M 2XSUA 2BUQA 2BUWA 2BV0B 2BUVA 3PCAM 3PCFA 4WHRF 5TD3A 1YKMB 1EOAB 1EOBB 2PCDA 3PCEA 3MV4A 3I4VA 3HHXA 1YKKB 4ILVA 3PCLM 3PCNA 4WHSB 2BV0A 3PCJA 3HJSA 3LKTM 2BUVB 3T67A 1DMHA 2XSRA 1DLQA 1EOBA 4WHPD 2AZQA 3MFLA 3MI1M 3PCGA 4WHSA 1DLMA 4WHRB 1DLTA 3PCFM 4WHOD 3I4YA 2XSVA 2PCDM 2BUZB 3PCHA 3PCEM 3MV4M 2BOYA 3PCKA 3MV6A 3PCNM 3I51A 3PCJM 1TMXA 4WHRA 3HKPA 3LMXA 2BUUB 1YKNA 2BUYA 3T67M 3PCBA 3LXVA 2BUZA 3MFLM
chains in the Genus database with same CATH topology
3PCGM 3PCIA 3HHYA 2BUUA 1YKNB 3HGIA 2BUYB 3TH1A 3PCMA 4WHOA 3HJQA 3PCHM 3PCDA 3O6RA 1YKPA 3PCKM 4ILTA 3MV6M 4WHPB 1EO9A 3LMXM 2BUXA 3T63A 4WHSD 1YKOA 2BUTB 1S9AA 4WHOB 3PCBM 2BUMA 3LXVM 1EO2B 3MI5A 1YKPB 1EOCB 3PCIM 4WHPA 3PCAA 1EO9B 1YKLB 2BUXB 2BURA 4WHQB 1YKOB 3PCMM 2BUTA 3PCDM 3PCLA 2BUMB 3O6JA 1EO2A 2BUQB 2BUWB 3HJ8A 3LKTA 1EOCA 3O5UA 1YKLA 3PCCM 1YKMA 1EOAA 3N9TA 3O32A 3PCCA 3T63M 2BURB 4WHQA 1YKKA 3MI1A 3MI5M 2XSUA 2BUQA 2BUWA 2BV0B 2BUVA 3PCAM 3PCFA 4WHRF 5TD3A 1YKMB 1EOAB 1EOBB 2PCDA 3PCEA 3MV4A 3I4VA 3HHXA 1YKKB 4ILVA 3PCLM 3PCNA 4WHSB 2BV0A 3PCJA 3HJSA 3LKTM 2BUVB 3T67A 1DMHA 2XSRA 1DLQA 1EOBA 4WHPD 2AZQA 3MFLA 3MI1M 3PCGA 4WHSA 1DLMA 4WHRB 1DLTA 3PCFM 4WHOD 3I4YA 2XSVA 2PCDM 2BUZB 3PCHA 3PCEM 3MV4M 2BOYA 3PCKA 3MV6A 3PCNM 3I51A 3PCJM 1TMXA 4WHRA 3HKPA 3LMXA 2BUUB 1YKNA 2BUYA 3T67M 3PCBA 3LXVA 2BUZA 3MFLM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PCG M;  3PCI A;  3HHY A;  2BUU A;  1YKN B;  3HGI A;  2BUY B;  3TH1 A;  3PCM A;  4WHO A;  3HJQ A;  3PCH M;  3PCD A;  3O6R A;  1YKP A;  3PCK M;  4ILT A;  3MV6 M;  4WHP B;  1EO9 A;  3LMX M;  2BUX A;  3T63 A;  4WHS D;  1YKO A;  2BUT B;  1S9A A;  4WHO B;  3PCB M;  2BUM A;  3LXV M;  1EO2 B;  3MI5 A;  1YKP B;  1EOC B;  3PCI M;  4WHP A;  3PCA A;  1EO9 B;  1YKL B;  2BUX B;  2BUR A;  4WHQ B;  1YKO B;  3PCM M;  2BUT A;  3PCD M;  3PCL A;  2BUM B;  3O6J A;  1EO2 A;  2BUQ B;  2BUW B;  3HJ8 A;  3LKT A;  1EOC A;  3O5U A;  1YKL A;  3PCC M;  1YKM A;  1EOA A;  3N9T A;  3O32 A;  3PCC A;  3T63 M;  2BUR B;  4WHQ A;  1YKK A;  3MI1 A;  3MI5 M;  2XSU A;  2BUQ A;  2BUW A;  2BV0 B;  2BUV A;  3PCA M;  3PCF A;  4WHR F;  5TD3 A;  1YKM B;  1EOA B;  1EOB B;  2PCD A;  3PCE A;  3MV4 A;  3I4V A;  3HHX A;  1YKK B;  4ILV A;  3PCL M;  3PCN A;  4WHS B;  2BV0 A;  3PCJ A;  3HJS A;  3LKT M;  2BUV B;  3T67 A;  1DMH A;  2XSR A;  1DLQ A;  1EOB A;  4WHP D;  2AZQ A;  3MFL A;  3MI1 M;  3PCG A;  4WHS A;  1DLM A;  4WHR B;  1DLT A;  3PCF M;  4WHO D;  3I4Y A;  2XSV A;  2PCD M;  2BUZ B;  3PCH A;  3PCE M;  3MV4 M;  2BOY A;  3PCK A;  3MV6 A;  3PCN M;  3I51 A;  3PCJ M;  1TMX A;  4WHR A;  3HKP A;  3LMX A;  2BUU B;  1YKN A;  2BUY A;  3T67 M;  3PCB A;  3LXV A;  2BUZ A;  3MFL M; 
#chains in the Genus database with same CATH topology
 3PCG M;  3PCI A;  3HHY A;  2BUU A;  1YKN B;  3HGI A;  2BUY B;  3TH1 A;  3PCM A;  4WHO A;  3HJQ A;  3PCH M;  3PCD A;  3O6R A;  1YKP A;  3PCK M;  4ILT A;  3MV6 M;  4WHP B;  1EO9 A;  3LMX M;  2BUX A;  3T63 A;  4WHS D;  1YKO A;  2BUT B;  1S9A A;  4WHO B;  3PCB M;  2BUM A;  3LXV M;  1EO2 B;  3MI5 A;  1YKP B;  1EOC B;  3PCI M;  4WHP A;  3PCA A;  1EO9 B;  1YKL B;  2BUX B;  2BUR A;  4WHQ B;  1YKO B;  3PCM M;  2BUT A;  3PCD M;  3PCL A;  2BUM B;  3O6J A;  1EO2 A;  2BUQ B;  2BUW B;  3HJ8 A;  3LKT A;  1EOC A;  3O5U A;  1YKL A;  3PCC M;  1YKM A;  1EOA A;  3N9T A;  3O32 A;  3PCC A;  3T63 M;  2BUR B;  4WHQ A;  1YKK A;  3MI1 A;  3MI5 M;  2XSU A;  2BUQ A;  2BUW A;  2BV0 B;  2BUV A;  3PCA M;  3PCF A;  4WHR F;  5TD3 A;  1YKM B;  1EOA B;  1EOB B;  2PCD A;  3PCE A;  3MV4 A;  3I4V A;  3HHX A;  1YKK B;  4ILV A;  3PCL M;  3PCN A;  4WHS B;  2BV0 A;  3PCJ A;  3HJS A;  3LKT M;  2BUV B;  3T67 A;  1DMH A;  2XSR A;  1DLQ A;  1EOB A;  4WHP D;  2AZQ A;  3MFL A;  3MI1 M;  3PCG A;  4WHS A;  1DLM A;  4WHR B;  1DLT A;  3PCF M;  4WHO D;  3I4Y A;  2XSV A;  2PCD M;  2BUZ B;  3PCH A;  3PCE M;  3MV4 M;  2BOY A;  3PCK A;  3MV6 A;  3PCN M;  3I51 A;  3PCJ M;  1TMX A;  4WHR A;  3HKP A;  3LMX A;  2BUU B;  1YKN A;  2BUY A;  3T67 M;  3PCB A;  3LXV A;  2BUZ A;  3MFL M; 
#chains in the Genus database with same CATH homology
 3PCG M;  3PCI A;  3HHY A;  2BUU A;  1YKN B;  3HGI A;  2BUY B;  3TH1 A;  3PCM A;  4WHO A;  3HJQ A;  3PCH M;  3PCD A;  3O6R A;  1YKP A;  3PCK M;  4ILT A;  3MV6 M;  4WHP B;  1EO9 A;  3LMX M;  2BUX A;  3T63 A;  4WHS D;  1YKO A;  2BUT B;  1S9A A;  4WHO B;  3PCB M;  2BUM A;  3LXV M;  1EO2 B;  3MI5 A;  1YKP B;  1EOC B;  3PCI M;  4WHP A;  3PCA A;  1EO9 B;  1YKL B;  2BUX B;  2BUR A;  4WHQ B;  1YKO B;  3PCM M;  2BUT A;  3PCD M;  3PCL A;  2BUM B;  3O6J A;  1EO2 A;  2BUQ B;  2BUW B;  3HJ8 A;  3LKT A;  1EOC A;  3O5U A;  1YKL A;  3PCC M;  1YKM A;  1EOA A;  3N9T A;  3O32 A;  3PCC A;  3T63 M;  2BUR B;  4WHQ A;  1YKK A;  3MI1 A;  3MI5 M;  2XSU A;  2BUQ A;  2BUW A;  2BV0 B;  2BUV A;  3PCA M;  3PCF A;  4WHR F;  5TD3 A;  1YKM B;  1EOA B;  1EOB B;  2PCD A;  3PCE A;  3MV4 A;  3I4V A;  3HHX A;  1YKK B;  4ILV A;  3PCL M;  3PCN A;  4WHS B;  2BV0 A;  3PCJ A;  3HJS A;  3LKT M;  2BUV B;  3T67 A;  1DMH A;  2XSR A;  1DLQ A;  1EOB A;  4WHP D;  2AZQ A;  3MFL A;  3MI1 M;  3PCG A;  4WHS A;  1DLM A;  4WHR B;  1DLT A;  3PCF M;  4WHO D;  3I4Y A;  2XSV A;  2PCD M;  2BUZ B;  3PCH A;  3PCE M;  3MV4 M;  2BOY A;  3PCK A;  3MV6 A;  3PCN M;  3I51 A;  3PCJ M;  1TMX A;  4WHR A;  3HKP A;  3LMX A;  2BUU B;  1YKN A;  2BUY A;  3T67 M;  3PCB A;  3LXV A;  2BUZ A;  3MFL M; 
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