3MI5M

Axial ligand swapping in double mutant maintains intradiol-cleavage chemistry in protocatechuate 3,4-dioxygenase
Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
238
structure length
238
Chain Sequence
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPHPWRNGPNDWRPAHIYFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Axial Ligand Swapping In Double Mutant Maintains Intradiol-cleavage Chemistry in Protocatechuate 3,4-Dioxygenase
rcsb
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
molecule tags Oxidoreductase
source organism Pseudomonas putida
total genus 56
structure length 238
sequence length 238
chains with identical sequence N, O, P, Q, R
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2010-04-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00775 Dioxygenase_C Dioxygenase
M PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3mi5M00
4WHRA 1EOCA 3HGIA 4ILTA 3PCLM 3MI1M 2BV0B 3LXVM 1EOAA 1YKKB 3PCMA 2BUXA 3MI5A 1EO9B 3O32A 2BURB 4WHSB 2BUVA 1EOBA 3T67A 1EOCB 3O6RA 3PCFA 3HJQA 4ILVA 3PCGA 2BV0A 3PCAM 3PCMM 3PCEA 2BOYA 2BUXB 3HJ8A 1EO2B 1YKNB 3T67M 1EOBB 3MV4A 3PCFM 3MV6A 3PCEM 4WHPA 1YKLB 1YKPB 3PCKM 3TH1A 3HHYA 1EO2A 3I4YA 1YKNA 3O6JA 2BUUA 3MV4M 3HKPA 3PCNA 1DLQA 3MFLA 2XSRA 2BUYB 3PCIA 4WHPB 3O5UA 3MI5M 1YKLA 1YKPA 2BUUB 2BUZB 3PCNM 1S9AA 3MFLM 4WHOD 2BUMB 3HJSA 3PCGM 3LKTA 3PCJA 3I51A 1DLMA 2BUWA 2BUYA 2PCDA 4WHQB 2AZQA 1DLTA 3PCHA 2BUQA 4WHSD 2BUZA 3I4VA 2BUMA 3LKTM 2BURA 3MV6M 2BUWB 2PCDM 1YKMB 1DMHA 3PCHM 4WHQA 2BUQB 4WHOB 2XSUA 3PCBA 1YKOB 2XSVA 3PCCA 2BUTA 3PCAA 1TMXA 4WHRF 3PCIM 3PCDA 3HHXA 1YKMA 4WHRB 3LMXA 3T63A 3PCBM 4WHOA 3PCCM 3N9TA 2BUTB 1YKOA 3PCLA 1EOAB 3MI1A 3PCJM 3PCDM 3LXVA 1YKKA 4WHPD 3PCKA 5TD3A 1EO9A 3LMXM 2BUVB 4WHSA 3T63M
chains in the Genus database with same CATH superfamily
4WHRA 1EOCA 3HGIA 4ILTA 3PCLM 3MI1M 2BV0B 3LXVM 1EOAA 1YKKB 3PCMA 2BUXA 3MI5A 1EO9B 3O32A 2BURB 4WHSB 2BUVA 1EOBA 3T67A 1EOCB 3O6RA 3PCFA 3HJQA 4ILVA 3PCGA 2BV0A 3PCAM 3PCMM 3PCEA 2BOYA 2BUXB 3HJ8A 1EO2B 1YKNB 3T67M 1EOBB 3MV4A 3PCFM 3MV6A 3PCEM 4WHPA 1YKLB 1YKPB 3PCKM 3TH1A 3HHYA 1EO2A 3I4YA 1YKNA 3O6JA 2BUUA 3MV4M 3HKPA 3PCNA 1DLQA 3MFLA 2XSRA 2BUYB 3PCIA 4WHPB 3O5UA 3MI5M 1YKLA 1YKPA 2BUUB 2BUZB 3PCNM 1S9AA 3MFLM 4WHOD 2BUMB 3HJSA 3PCGM 3LKTA 3PCJA 3I51A 1DLMA 2BUWA 2BUYA 2PCDA 4WHQB 2AZQA 1DLTA 3PCHA 2BUQA 4WHSD 2BUZA 3I4VA 2BUMA 3LKTM 2BURA 3MV6M 2BUWB 2PCDM 1YKMB 1DMHA 3PCHM 4WHQA 2BUQB 4WHOB 2XSUA 3PCBA 1YKOB 2XSVA 3PCCA 2BUTA 3PCAA 1TMXA 4WHRF 3PCIM 3PCDA 3HHXA 1YKMA 4WHRB 3LMXA 3T63A 3PCBM 4WHOA 3PCCM 3N9TA 2BUTB 1YKOA 3PCLA 1EOAB 3MI1A 3PCJM 3PCDM 3LXVA 1YKKA 4WHPD 3PCKA 5TD3A 1EO9A 3LMXM 2BUVB 4WHSA 3T63M
chains in the Genus database with same CATH topology
4WHRA 1EOCA 3HGIA 4ILTA 3PCLM 3MI1M 2BV0B 3LXVM 1EOAA 1YKKB 3PCMA 2BUXA 3MI5A 1EO9B 3O32A 2BURB 4WHSB 2BUVA 1EOBA 3T67A 1EOCB 3O6RA 3PCFA 3HJQA 4ILVA 3PCGA 2BV0A 3PCAM 3PCMM 3PCEA 2BOYA 2BUXB 3HJ8A 1EO2B 1YKNB 3T67M 1EOBB 3MV4A 3PCFM 3MV6A 3PCEM 4WHPA 1YKLB 1YKPB 3PCKM 3TH1A 3HHYA 1EO2A 3I4YA 1YKNA 3O6JA 2BUUA 3MV4M 3HKPA 3PCNA 1DLQA 3MFLA 2XSRA 2BUYB 3PCIA 4WHPB 3O5UA 3MI5M 1YKLA 1YKPA 2BUUB 2BUZB 3PCNM 1S9AA 3MFLM 4WHOD 2BUMB 3HJSA 3PCGM 3LKTA 3PCJA 3I51A 1DLMA 2BUWA 2BUYA 2PCDA 4WHQB 2AZQA 1DLTA 3PCHA 2BUQA 4WHSD 2BUZA 3I4VA 2BUMA 3LKTM 2BURA 3MV6M 2BUWB 2PCDM 1YKMB 1DMHA 3PCHM 4WHQA 2BUQB 4WHOB 2XSUA 3PCBA 1YKOB 2XSVA 3PCCA 2BUTA 3PCAA 1TMXA 4WHRF 3PCIM 3PCDA 3HHXA 1YKMA 4WHRB 3LMXA 3T63A 3PCBM 4WHOA 3PCCM 3N9TA 2BUTB 1YKOA 3PCLA 1EOAB 3MI1A 3PCJM 3PCDM 3LXVA 1YKKA 4WHPD 3PCKA 5TD3A 1EO9A 3LMXM 2BUVB 4WHSA 3T63M
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WHR A;  1EOC A;  3HGI A;  4ILT A;  3PCL M;  3MI1 M;  2BV0 B;  3LXV M;  1EOA A;  1YKK B;  3PCM A;  2BUX A;  3MI5 A;  1EO9 B;  3O32 A;  2BUR B;  4WHS B;  2BUV A;  1EOB A;  3T67 A;  1EOC B;  3O6R A;  3PCF A;  3HJQ A;  4ILV A;  3PCG A;  2BV0 A;  3PCA M;  3PCM M;  3PCE A;  2BOY A;  2BUX B;  3HJ8 A;  1EO2 B;  1YKN B;  3T67 M;  1EOB B;  3MV4 A;  3PCF M;  3MV6 A;  3PCE M;  4WHP A;  1YKL B;  1YKP B;  3PCK M;  3TH1 A;  3HHY A;  1EO2 A;  3I4Y A;  1YKN A;  3O6J A;  2BUU A;  3MV4 M;  3HKP A;  3PCN A;  1DLQ A;  3MFL A;  2XSR A;  2BUY B;  3PCI A;  4WHP B;  3O5U A;  3MI5 M;  1YKL A;  1YKP A;  2BUU B;  2BUZ B;  3PCN M;  1S9A A;  3MFL M;  4WHO D;  2BUM B;  3HJS A;  3PCG M;  3LKT A;  3PCJ A;  3I51 A;  1DLM A;  2BUW A;  2BUY A;  2PCD A;  4WHQ B;  2AZQ A;  1DLT A;  3PCH A;  2BUQ A;  4WHS D;  2BUZ A;  3I4V A;  2BUM A;  3LKT M;  2BUR A;  3MV6 M;  2BUW B;  2PCD M;  1YKM B;  1DMH A;  3PCH M;  4WHQ A;  2BUQ B;  4WHO B;  2XSU A;  3PCB A;  1YKO B;  2XSV A;  3PCC A;  2BUT A;  3PCA A;  1TMX A;  4WHR F;  3PCI M;  3PCD A;  3HHX A;  1YKM A;  4WHR B;  3LMX A;  3T63 A;  3PCB M;  4WHO A;  3PCC M;  3N9T A;  2BUT B;  1YKO A;  3PCL A;  1EOA B;  3MI1 A;  3PCJ M;  3PCD M;  3LXV A;  1YKK A;  4WHP D;  3PCK A;  5TD3 A;  1EO9 A;  3LMX M;  2BUV B;  4WHS A;  3T63 M; 
#chains in the Genus database with same CATH topology
 4WHR A;  1EOC A;  3HGI A;  4ILT A;  3PCL M;  3MI1 M;  2BV0 B;  3LXV M;  1EOA A;  1YKK B;  3PCM A;  2BUX A;  3MI5 A;  1EO9 B;  3O32 A;  2BUR B;  4WHS B;  2BUV A;  1EOB A;  3T67 A;  1EOC B;  3O6R A;  3PCF A;  3HJQ A;  4ILV A;  3PCG A;  2BV0 A;  3PCA M;  3PCM M;  3PCE A;  2BOY A;  2BUX B;  3HJ8 A;  1EO2 B;  1YKN B;  3T67 M;  1EOB B;  3MV4 A;  3PCF M;  3MV6 A;  3PCE M;  4WHP A;  1YKL B;  1YKP B;  3PCK M;  3TH1 A;  3HHY A;  1EO2 A;  3I4Y A;  1YKN A;  3O6J A;  2BUU A;  3MV4 M;  3HKP A;  3PCN A;  1DLQ A;  3MFL A;  2XSR A;  2BUY B;  3PCI A;  4WHP B;  3O5U A;  3MI5 M;  1YKL A;  1YKP A;  2BUU B;  2BUZ B;  3PCN M;  1S9A A;  3MFL M;  4WHO D;  2BUM B;  3HJS A;  3PCG M;  3LKT A;  3PCJ A;  3I51 A;  1DLM A;  2BUW A;  2BUY A;  2PCD A;  4WHQ B;  2AZQ A;  1DLT A;  3PCH A;  2BUQ A;  4WHS D;  2BUZ A;  3I4V A;  2BUM A;  3LKT M;  2BUR A;  3MV6 M;  2BUW B;  2PCD M;  1YKM B;  1DMH A;  3PCH M;  4WHQ A;  2BUQ B;  4WHO B;  2XSU A;  3PCB A;  1YKO B;  2XSV A;  3PCC A;  2BUT A;  3PCA A;  1TMX A;  4WHR F;  3PCI M;  3PCD A;  3HHX A;  1YKM A;  4WHR B;  3LMX A;  3T63 A;  3PCB M;  4WHO A;  3PCC M;  3N9T A;  2BUT B;  1YKO A;  3PCL A;  1EOA B;  3MI1 A;  3PCJ M;  3PCD M;  3LXV A;  1YKK A;  4WHP D;  3PCK A;  5TD3 A;  1EO9 A;  3LMX M;  2BUV B;  4WHS A;  3T63 M; 
#chains in the Genus database with same CATH homology
 4WHR A;  1EOC A;  3HGI A;  4ILT A;  3PCL M;  3MI1 M;  2BV0 B;  3LXV M;  1EOA A;  1YKK B;  3PCM A;  2BUX A;  3MI5 A;  1EO9 B;  3O32 A;  2BUR B;  4WHS B;  2BUV A;  1EOB A;  3T67 A;  1EOC B;  3O6R A;  3PCF A;  3HJQ A;  4ILV A;  3PCG A;  2BV0 A;  3PCA M;  3PCM M;  3PCE A;  2BOY A;  2BUX B;  3HJ8 A;  1EO2 B;  1YKN B;  3T67 M;  1EOB B;  3MV4 A;  3PCF M;  3MV6 A;  3PCE M;  4WHP A;  1YKL B;  1YKP B;  3PCK M;  3TH1 A;  3HHY A;  1EO2 A;  3I4Y A;  1YKN A;  3O6J A;  2BUU A;  3MV4 M;  3HKP A;  3PCN A;  1DLQ A;  3MFL A;  2XSR A;  2BUY B;  3PCI A;  4WHP B;  3O5U A;  3MI5 M;  1YKL A;  1YKP A;  2BUU B;  2BUZ B;  3PCN M;  1S9A A;  3MFL M;  4WHO D;  2BUM B;  3HJS A;  3PCG M;  3LKT A;  3PCJ A;  3I51 A;  1DLM A;  2BUW A;  2BUY A;  2PCD A;  4WHQ B;  2AZQ A;  1DLT A;  3PCH A;  2BUQ A;  4WHS D;  2BUZ A;  3I4V A;  2BUM A;  3LKT M;  2BUR A;  3MV6 M;  2BUW B;  2PCD M;  1YKM B;  1DMH A;  3PCH M;  4WHQ A;  2BUQ B;  4WHO B;  2XSU A;  3PCB A;  1YKO B;  2XSV A;  3PCC A;  2BUT A;  3PCA A;  1TMX A;  4WHR F;  3PCI M;  3PCD A;  3HHX A;  1YKM A;  4WHR B;  3LMX A;  3T63 A;  3PCB M;  4WHO A;  3PCC M;  3N9T A;  2BUT B;  1YKO A;  3PCL A;  1EOA B;  3MI1 A;  3PCJ M;  3PCD M;  3LXV A;  1YKK A;  4WHP D;  3PCK A;  5TD3 A;  1EO9 A;  3LMX M;  2BUV B;  4WHS A;  3T63 M; 
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