3MIPA

I-msoi re-designed for altered dna cleavage specificity (-8gcg)
Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
161
structure length
161
Chain Sequence
TLQPTEAAYIAGFLDGDGSIYARLEPRPDYKDIKYQVRLAISFIQRKDKFPYLQDIYDQLGKRGILRKDRGDGIADYRIYGSTHLSIILPDLVPYLRIKKKQANRILHIINLYPQAQKNPSKFLDLVKIVDDVQNLNKRADELKSTNYDRLLEEFLKAGKI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (9-22)AH3 (87-97)S4 (79-85)TVIII1 (36-39)S2 (40-51)TIV3 (74-77)TI'1 (65-68)AH2 (55-65)TIV4 (75-78)EMPTYS3 (70-72)TIV2 (72-75)3H2 (98-100)TIV5 (101-104)AH4 (104-122)AH5 (125-142)S1 (23-31)TI1 (32-35)AH6 (152-162)TI2 (144-147)3H1 (52-54)TIV1 (35-38)Updating...
connected with : NaN
molecule tags De novo protein/dna
source organism Synthetic construct
publication title Computational reprogramming of homing endonuclease specificity at multiple adjacent base pairs.
pubmed doi rcsb
molecule keywords Mso-8G
total genus 50
structure length 161
sequence length 161
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-04-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 3mipA00
3MXAA 3EH8A 1UM2A 3HYIA 1MOWA 5AKFA 1DQ3A 5A78A 2VS7A 4UN8G 4Z1XA 2CW8A 1LWTA 2EX5A 4AAFA 4UN7A 5AKMA 4YHXA 4AADA 5E5OA 4D6OA 1VDEA 4UT0A 1EF0A 5A0WA 2QOJZ 2VBLA 2VBOB 2DCHX 3MXBB 5E5SA 5A77A 4UNCA 2XE0B 4AAEA 1B24A 5A0MA 5AKNA 3KO2A 4YISA 5E63A 3OOLA 1N3FA 5A74A 5E67A 2I3QA 1LWSA 1M5XA 4AAGA 1U0CA 4EFJA 2VBNA 1AF5A 2VS8A 1JVAA 3UVFA 3MIPA 4UNAA 4UN9G 1G9YA 4Z20A 3HYJA 2VBLB 2VBJA 4AABA 1N3EA 4AQUA 1U0DA 3FD2A 1DFAA 4Z1ZA 4UNBA 5A72A 2CW7A 5A0MB 3OORA 2O7MA 3C0XA 3R7PA 4D6NA 2I3PA 4UN8A 1T9JA 2AB5A 3MISA 4UN7G 5AK9A 3MX9A 3E54A 4YITA 1P8KZ 1G9ZA 2VBNB 4LQ0A 3C0WA 1BP7A 2VBOA 3MXBA 3QQYA 4LOXA 4AQXA 2VBJB 1T9IA 4UN9A 1R7MA 2XE0A 2FLDA
chains in the Genus database with same CATH superfamily
3MXAA 3EH8A 1UM2A 3HYIA 1MOWA 5AKFA 1DQ3A 5A78A 2VS7A 4UN8G 4Z1XA 2CW8A 1LWTA 2EX5A 4AAFA 4UN7A 5AKMA 4YHXA 4AADA 5E5OA 4D6OA 1VDEA 4UT0A 1EF0A 5A0WA 2QOJZ 2VBLA 2VBOB 2DCHX 3MXBB 5E5SA 4KZSA 5A77A 4UNCA 2XE0B 4AAEA 1B24A 5A0MA 5AKNA 3KO2A 4YISA 5E63A 3OOLA 1N3FA 5A74A 5E67A 2I3QA 1LWSA 1M5XA 4AAGA 1U0CA 4EFJA 2F4LA 2VBNA 1AF5A 2VS8A 1JVAA 3UVFA 3MIPA 4UNAA 4UN9G 1G9YA 4Z20A 3HYJA 2VBLB 2VBJA 4AABA 1N3EA 4AQUA 1U0DA 3FD2A 1DFAA 4Z1ZA 4UNBA 5A72A 2CW7A 5A0MB 3OORA 2O7MA 3C0XA 3R7PA 4D6NA 2I3PA 4UN8A 1T9JA 2AB5A 3MISA 4UN7G 5AK9A 3MX9A 3E54A 4YITA 1P8KZ 1G9ZA 2VBNB 4LQ0A 3C0WA 1BP7A 2VBOA 3MXBA 3QQYA 4LOXA 4AQXA 2VBJB 1T9IA 4UN9A 1R7MA 2XE0A 2FLDA
chains in the Genus database with same CATH topology
3MXAA 3EH8A 1UM2A 3HYIA 1MOWA 5AKFA 1DQ3A 5A78A 2VS7A 4UN8G 4Z1XA 2CW8A 1LWTA 2EX5A 4AAFA 4UN7A 5AKMA 4YHXA 4AADA 5E5OA 4D6OA 1VDEA 4UT0A 1EF0A 5A0WA 2QOJZ 2VBLA 2VBOB 2DCHX 3MXBB 5E5SA 5A77A 4UNCA 2XE0B 4AAEA 1B24A 5A0MA 5AKNA 3KO2A 4YISA 5E63A 3OOLA 1N3FA 5A74A 5E67A 2I3QA 1LWSA 1M5XA 4AAGA 1U0CA 4EFJA 2VBNA 1AF5A 2VS8A 1JVAA 3UVFA 3MIPA 4UNAA 4UN9G 1G9YA 4Z20A 3HYJA 2VBLB 2VBJA 4AABA 1N3EA 4AQUA 1U0DA 3FD2A 1DFAA 4Z1ZA 4UNBA 5A72A 2CW7A 5A0MB 3OORA 2O7MA 3C0XA 3R7PA 4D6NA 2I3PA 4UN8A 1T9JA 2AB5A 3MISA 4UN7G 5AK9A 3MX9A 3E54A 4YITA 1P8KZ 1G9ZA 2VBNB 4LQ0A 3C0WA 1BP7A 2VBOA 3MXBA 3QQYA 4LOXA 4AQXA 2VBJB 1T9IA 4UN9A 1R7MA 2XE0A 2FLDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MXA A;  3EH8 A;  1UM2 A;  3HYI A;  1MOW A;  5AKF A;  1DQ3 A;  5A78 A;  2VS7 A;  4UN8 G;  4Z1X A;  2CW8 A;  1LWT A;  2EX5 A;  4AAF A;  4UN7 A;  5AKM A;  4YHX A;  4AAD A;  5E5O A;  4D6O A;  1VDE A;  4UT0 A;  1EF0 A;  5A0W A;  2QOJ Z;  2VBL A;  2VBO B;  2DCH X;  3MXB B;  5E5S A;  5A77 A;  4UNC A;  2XE0 B;  4AAE A;  1B24 A;  5A0M A;  5AKN A;  3KO2 A;  4YIS A;  5E63 A;  3OOL A;  1N3F A;  5A74 A;  5E67 A;  2I3Q A;  1LWS A;  1M5X A;  4AAG A;  1U0C A;  4EFJ A;  2VBN A;  1AF5 A;  2VS8 A;  1JVA A;  3UVF A;  3MIP A;  4UNA A;  4UN9 G;  1G9Y A;  4Z20 A;  3HYJ A;  2VBL B;  2VBJ A;  4AAB A;  1N3E A;  4AQU A;  1U0D A;  3FD2 A;  1DFA A;  4Z1Z A;  4UNB A;  5A72 A;  2CW7 A;  5A0M B;  3OOR A;  2O7M A;  3C0X A;  3R7P A;  4D6N A;  2I3P A;  4UN8 A;  1T9J A;  2AB5 A;  3MIS A;  4UN7 G;  5AK9 A;  3MX9 A;  3E54 A;  4YIT A;  1P8K Z;  1G9Z A;  2VBN B;  4LQ0 A;  3C0W A;  1BP7 A;  2VBO A;  3MXB A;  3QQY A;  4LOX A;  4AQX A;  2VBJ B;  1T9I A;  4UN9 A;  1R7M A;  2XE0 A;  2FLD A; 
#chains in the Genus database with same CATH topology
 3MXA A;  3EH8 A;  1UM2 A;  3HYI A;  1MOW A;  5AKF A;  1DQ3 A;  5A78 A;  2VS7 A;  4UN8 G;  4Z1X A;  2CW8 A;  1LWT A;  2EX5 A;  4AAF A;  4UN7 A;  5AKM A;  4YHX A;  4AAD A;  5E5O A;  4D6O A;  1VDE A;  4UT0 A;  1EF0 A;  5A0W A;  2QOJ Z;  2VBL A;  2VBO B;  2DCH X;  3MXB B;  5E5S A;  4KZS A;  5A77 A;  4UNC A;  2XE0 B;  4AAE A;  1B24 A;  5A0M A;  5AKN A;  3KO2 A;  4YIS A;  5E63 A;  3OOL A;  1N3F A;  5A74 A;  5E67 A;  2I3Q A;  1LWS A;  1M5X A;  4AAG A;  1U0C A;  4EFJ A;  2F4L A;  2VBN A;  1AF5 A;  2VS8 A;  1JVA A;  3UVF A;  3MIP A;  4UNA A;  4UN9 G;  1G9Y A;  4Z20 A;  3HYJ A;  2VBL B;  2VBJ A;  4AAB A;  1N3E A;  4AQU A;  1U0D A;  3FD2 A;  1DFA A;  4Z1Z A;  4UNB A;  5A72 A;  2CW7 A;  5A0M B;  3OOR A;  2O7M A;  3C0X A;  3R7P A;  4D6N A;  2I3P A;  4UN8 A;  1T9J A;  2AB5 A;  3MIS A;  4UN7 G;  5AK9 A;  3MX9 A;  3E54 A;  4YIT A;  1P8K Z;  1G9Z A;  2VBN B;  4LQ0 A;  3C0W A;  1BP7 A;  2VBO A;  3MXB A;  3QQY A;  4LOX A;  4AQX A;  2VBJ B;  1T9I A;  4UN9 A;  1R7M A;  2XE0 A;  2FLD A; 
#chains in the Genus database with same CATH homology
 3MXA A;  3EH8 A;  1UM2 A;  3HYI A;  1MOW A;  5AKF A;  1DQ3 A;  5A78 A;  2VS7 A;  4UN8 G;  4Z1X A;  2CW8 A;  1LWT A;  2EX5 A;  4AAF A;  4UN7 A;  5AKM A;  4YHX A;  4AAD A;  5E5O A;  4D6O A;  1VDE A;  4UT0 A;  1EF0 A;  5A0W A;  2QOJ Z;  2VBL A;  2VBO B;  2DCH X;  3MXB B;  5E5S A;  5A77 A;  4UNC A;  2XE0 B;  4AAE A;  1B24 A;  5A0M A;  5AKN A;  3KO2 A;  4YIS A;  5E63 A;  3OOL A;  1N3F A;  5A74 A;  5E67 A;  2I3Q A;  1LWS A;  1M5X A;  4AAG A;  1U0C A;  4EFJ A;  2VBN A;  1AF5 A;  2VS8 A;  1JVA A;  3UVF A;  3MIP A;  4UNA A;  4UN9 G;  1G9Y A;  4Z20 A;  3HYJ A;  2VBL B;  2VBJ A;  4AAB A;  1N3E A;  4AQU A;  1U0D A;  3FD2 A;  1DFA A;  4Z1Z A;  4UNB A;  5A72 A;  2CW7 A;  5A0M B;  3OOR A;  2O7M A;  3C0X A;  3R7P A;  4D6N A;  2I3P A;  4UN8 A;  1T9J A;  2AB5 A;  3MIS A;  4UN7 G;  5AK9 A;  3MX9 A;  3E54 A;  4YIT A;  1P8K Z;  1G9Z A;  2VBN B;  4LQ0 A;  3C0W A;  1BP7 A;  2VBO A;  3MXB A;  3QQY A;  4LOX A;  4AQX A;  2VBJ B;  1T9I A;  4UN9 A;  1R7M A;  2XE0 A;  2FLD A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.