3N9TA

Cryatal structure of hydroxyquinol 1,2-dioxygenase from pseudomonas putida dll-e4
Total Genus 95

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
286
structure length
286
Chain Sequence
YKAVEALISDQAVDSFETSPNPRFKQIMQSLVRHLHDFVSEVELTEQEWFEGIRFLTATGQKCDGKVRQEFILLSDTLGVSMLVDAINHRQSTNATETTVFGPFFIEGMPDRGYGENMALTDGVPALVYGRVLDVQGRPVVGAVLDVWQTADNGMYSGQDPDQPFGNLRGRYRSDNDGCFAIQTTVPVCYPIPTDGPVGEMLDAANRHAWRPAHLHFMIQAPGYRKLVTHLFNSDDPYLDSDAVFGVKGSLQVKYEDRPAHDEDAGGLDMPYPYKSAYYEFVMEAE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (6-19)TVIII1 (23-26)TI1 (20-23)AH2 (26-46)AH3 (50-66)S5 (194-195)TIV1 (68-71)AH4 (74-82)AH6 (201-209)AH5 (84-92)S7 (218-225)EMPTYTI4 (164-167)TII4 (170-173)TII1 (117-120)TII3 (168-171)S4 (183-189)S1 (129-137)TII6 (263-266)TI5 (179-182)S3 (173-178)TI2 (138-141)TII2 (144-147)S2 (147-152)TI3 (155-158)TIV2 (160-163)TIV3 (161-164)S8 (228-237)TI7 (240-243)S6 (214-215)TII5 (225-228)TI6 (237-240)TIV4 (243-246)S10 (259-262)TIV5 (266-269)TI'1 (269-272)S11 (278-286)TI9 (246-249)TI8 (242-245)3H1 (253-255)S9 (256-257)Updating...
connected with : NaN
publication title Cryatal structure of Hydroxyquinol 1,2-dioxygenase from Pseudomonas putida DLL-E4
rcsb
molecule keywords PnpC
molecule tags Oxidoreductase
source organism Pseudomonas putida
total genus 95
structure length 286
sequence length 286
ec nomenclature ec 1.13.11.37: Hydroxyquinol 1,2-dioxygenase.
pdb deposition date 2010-05-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
A PF04444 Dioxygenase_N Catechol dioxygenase N terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3n9tA00
3LXVM 3PCCM 2BUZB 3T63A 2XSUA 3T67M 3I51A 1YKOA 2BUMB 1YKKB 4WHOB 3O6JA 4WHRA 1DLMA 2BOYA 3PCNA 2BUUA 3MI1A 3PCEA 2BUVB 3PCJA 1YKNB 2AZQA 3O5UA 3MI5A 2BUZA 3PCEM 3MFLM 3HJ8A 3PCAM 2BUMA 3LMXM 1YKKA 3PCBM 4WHOA 1EO9B 2BUWB 3O32A 3PCKA 3PCDA 3PCLA 3HHYA 2BUVA 3HHXA 1YKNA 1EO2B 3I4VA 4ILVA 3PCDM 1EOAB 3T63M 3HJQA 2BV0B 4WHSB 1EO9A 5TD3A 2BURB 1YKMB 2BUWA 3PCNM 3MI1M 4WHPB 1EO2A 1YKPB 3TH1A 3PCGA 3PCJM 4WHOD 3MI5M 1EOAA 3PCHA 1EOCB 2BUXB 2BV0A 4WHSA 3PCHM 3LKTA 1YKMA 3N9TA 1YKLB 2BUQB 3PCFA 3PCKM 3PCLM 4WHPA 1YKPA 1TMXA 1S9AA 3HJSA 3MV4A 1EOCA 3PCMA 2PCDA 1DLQA 4WHRB 3LXVA 2XSRA 3PCCA 3PCIA 1EOBB 2BUQA 3T67A 3PCIM 3I4YA 3HKPA 4WHSD 3PCGM 1DLTA 2BUTB 3HGIA 4WHQB 4ILTA 3O6RA 2BURA 2BUYB 4WHPD 1EOBA 3LKTM 1DMHA 3MFLA 4WHRF 3PCFM 3PCAA 3LMXA 1YKOB 3PCBA 3MV6A 2BUTA 2BUXA 4WHQA 2XSVA 2BUYA 3MV4M 1YKLA 3MV6M 3PCMM 2BUUB 2PCDM
chains in the Genus database with same CATH superfamily
3LXVM 3PCCM 2BUZB 3T63A 2XSUA 3T67M 3I51A 1YKOA 2BUMB 1YKKB 4WHOB 3O6JA 4WHRA 1DLMA 2BOYA 3PCNA 2BUUA 3MI1A 3PCEA 2BUVB 3PCJA 1YKNB 2AZQA 3O5UA 3MI5A 2BUZA 3PCEM 3MFLM 3HJ8A 3PCAM 2BUMA 3LMXM 1YKKA 3PCBM 4WHOA 1EO9B 2BUWB 3O32A 3PCKA 3PCDA 3PCLA 3HHYA 2BUVA 3HHXA 1YKNA 1EO2B 3I4VA 4ILVA 3PCDM 1EOAB 3T63M 3HJQA 2BV0B 4WHSB 1EO9A 5TD3A 2BURB 1YKMB 2BUWA 3PCNM 3MI1M 4WHPB 1EO2A 1YKPB 3TH1A 3PCGA 3PCJM 4WHOD 3MI5M 1EOAA 3PCHA 1EOCB 2BUXB 2BV0A 4WHSA 3PCHM 3LKTA 1YKMA 3N9TA 1YKLB 2BUQB 3PCFA 3PCKM 3PCLM 4WHPA 1YKPA 1TMXA 1S9AA 3HJSA 3MV4A 1EOCA 3PCMA 2PCDA 1DLQA 4WHRB 3LXVA 2XSRA 3PCCA 3PCIA 1EOBB 2BUQA 3T67A 3PCIM 3I4YA 3HKPA 4WHSD 3PCGM 1DLTA 2BUTB 3HGIA 4WHQB 4ILTA 3O6RA 2BURA 2BUYB 4WHPD 1EOBA 3LKTM 1DMHA 3MFLA 4WHRF 3PCFM 3PCAA 3LMXA 1YKOB 3PCBA 3MV6A 2BUTA 2BUXA 4WHQA 2XSVA 2BUYA 3MV4M 1YKLA 3MV6M 3PCMM 2BUUB 2PCDM
chains in the Genus database with same CATH topology
3LXVM 3PCCM 2BUZB 3T63A 2XSUA 3T67M 3I51A 1YKOA 2BUMB 1YKKB 4WHOB 3O6JA 4WHRA 1DLMA 2BOYA 3PCNA 2BUUA 3MI1A 3PCEA 2BUVB 3PCJA 1YKNB 2AZQA 3O5UA 3MI5A 2BUZA 3PCEM 3MFLM 3HJ8A 3PCAM 2BUMA 3LMXM 1YKKA 3PCBM 4WHOA 1EO9B 2BUWB 3O32A 3PCKA 3PCDA 3PCLA 3HHYA 2BUVA 3HHXA 1YKNA 1EO2B 3I4VA 4ILVA 3PCDM 1EOAB 3T63M 3HJQA 2BV0B 4WHSB 1EO9A 5TD3A 2BURB 1YKMB 2BUWA 3PCNM 3MI1M 4WHPB 1EO2A 1YKPB 3TH1A 3PCGA 3PCJM 4WHOD 3MI5M 1EOAA 3PCHA 1EOCB 2BUXB 2BV0A 4WHSA 3PCHM 3LKTA 1YKMA 3N9TA 1YKLB 2BUQB 3PCFA 3PCKM 3PCLM 4WHPA 1YKPA 1TMXA 1S9AA 3HJSA 3MV4A 1EOCA 3PCMA 2PCDA 1DLQA 4WHRB 3LXVA 2XSRA 3PCCA 3PCIA 1EOBB 2BUQA 3T67A 3PCIM 3I4YA 3HKPA 4WHSD 3PCGM 1DLTA 2BUTB 3HGIA 4WHQB 4ILTA 3O6RA 2BURA 2BUYB 4WHPD 1EOBA 3LKTM 1DMHA 3MFLA 4WHRF 3PCFM 3PCAA 3LMXA 1YKOB 3PCBA 3MV6A 2BUTA 2BUXA 4WHQA 2XSVA 2BUYA 3MV4M 1YKLA 3MV6M 3PCMM 2BUUB 2PCDM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LXV M;  3PCC M;  2BUZ B;  3T63 A;  2XSU A;  3T67 M;  3I51 A;  1YKO A;  2BUM B;  1YKK B;  4WHO B;  3O6J A;  4WHR A;  1DLM A;  2BOY A;  3PCN A;  2BUU A;  3MI1 A;  3PCE A;  2BUV B;  3PCJ A;  1YKN B;  2AZQ A;  3O5U A;  3MI5 A;  2BUZ A;  3PCE M;  3MFL M;  3HJ8 A;  3PCA M;  2BUM A;  3LMX M;  1YKK A;  3PCB M;  4WHO A;  1EO9 B;  2BUW B;  3O32 A;  3PCK A;  3PCD A;  3PCL A;  3HHY A;  2BUV A;  3HHX A;  1YKN A;  1EO2 B;  3I4V A;  4ILV A;  3PCD M;  1EOA B;  3T63 M;  3HJQ A;  2BV0 B;  4WHS B;  1EO9 A;  5TD3 A;  2BUR B;  1YKM B;  2BUW A;  3PCN M;  3MI1 M;  4WHP B;  1EO2 A;  1YKP B;  3TH1 A;  3PCG A;  3PCJ M;  4WHO D;  3MI5 M;  1EOA A;  3PCH A;  1EOC B;  2BUX B;  2BV0 A;  4WHS A;  3PCH M;  3LKT A;  1YKM A;  3N9T A;  1YKL B;  2BUQ B;  3PCF A;  3PCK M;  3PCL M;  4WHP A;  1YKP A;  1TMX A;  1S9A A;  3HJS A;  3MV4 A;  1EOC A;  3PCM A;  2PCD A;  1DLQ A;  4WHR B;  3LXV A;  2XSR A;  3PCC A;  3PCI A;  1EOB B;  2BUQ A;  3T67 A;  3PCI M;  3I4Y A;  3HKP A;  4WHS D;  3PCG M;  1DLT A;  2BUT B;  3HGI A;  4WHQ B;  4ILT A;  3O6R A;  2BUR A;  2BUY B;  4WHP D;  1EOB A;  3LKT M;  1DMH A;  3MFL A;  4WHR F;  3PCF M;  3PCA A;  3LMX A;  1YKO B;  3PCB A;  3MV6 A;  2BUT A;  2BUX A;  4WHQ A;  2XSV A;  2BUY A;  3MV4 M;  1YKL A;  3MV6 M;  3PCM M;  2BUU B;  2PCD M; 
#chains in the Genus database with same CATH topology
 3LXV M;  3PCC M;  2BUZ B;  3T63 A;  2XSU A;  3T67 M;  3I51 A;  1YKO A;  2BUM B;  1YKK B;  4WHO B;  3O6J A;  4WHR A;  1DLM A;  2BOY A;  3PCN A;  2BUU A;  3MI1 A;  3PCE A;  2BUV B;  3PCJ A;  1YKN B;  2AZQ A;  3O5U A;  3MI5 A;  2BUZ A;  3PCE M;  3MFL M;  3HJ8 A;  3PCA M;  2BUM A;  3LMX M;  1YKK A;  3PCB M;  4WHO A;  1EO9 B;  2BUW B;  3O32 A;  3PCK A;  3PCD A;  3PCL A;  3HHY A;  2BUV A;  3HHX A;  1YKN A;  1EO2 B;  3I4V A;  4ILV A;  3PCD M;  1EOA B;  3T63 M;  3HJQ A;  2BV0 B;  4WHS B;  1EO9 A;  5TD3 A;  2BUR B;  1YKM B;  2BUW A;  3PCN M;  3MI1 M;  4WHP B;  1EO2 A;  1YKP B;  3TH1 A;  3PCG A;  3PCJ M;  4WHO D;  3MI5 M;  1EOA A;  3PCH A;  1EOC B;  2BUX B;  2BV0 A;  4WHS A;  3PCH M;  3LKT A;  1YKM A;  3N9T A;  1YKL B;  2BUQ B;  3PCF A;  3PCK M;  3PCL M;  4WHP A;  1YKP A;  1TMX A;  1S9A A;  3HJS A;  3MV4 A;  1EOC A;  3PCM A;  2PCD A;  1DLQ A;  4WHR B;  3LXV A;  2XSR A;  3PCC A;  3PCI A;  1EOB B;  2BUQ A;  3T67 A;  3PCI M;  3I4Y A;  3HKP A;  4WHS D;  3PCG M;  1DLT A;  2BUT B;  3HGI A;  4WHQ B;  4ILT A;  3O6R A;  2BUR A;  2BUY B;  4WHP D;  1EOB A;  3LKT M;  1DMH A;  3MFL A;  4WHR F;  3PCF M;  3PCA A;  3LMX A;  1YKO B;  3PCB A;  3MV6 A;  2BUT A;  2BUX A;  4WHQ A;  2XSV A;  2BUY A;  3MV4 M;  1YKL A;  3MV6 M;  3PCM M;  2BUU B;  2PCD M; 
#chains in the Genus database with same CATH homology
 3LXV M;  3PCC M;  2BUZ B;  3T63 A;  2XSU A;  3T67 M;  3I51 A;  1YKO A;  2BUM B;  1YKK B;  4WHO B;  3O6J A;  4WHR A;  1DLM A;  2BOY A;  3PCN A;  2BUU A;  3MI1 A;  3PCE A;  2BUV B;  3PCJ A;  1YKN B;  2AZQ A;  3O5U A;  3MI5 A;  2BUZ A;  3PCE M;  3MFL M;  3HJ8 A;  3PCA M;  2BUM A;  3LMX M;  1YKK A;  3PCB M;  4WHO A;  1EO9 B;  2BUW B;  3O32 A;  3PCK A;  3PCD A;  3PCL A;  3HHY A;  2BUV A;  3HHX A;  1YKN A;  1EO2 B;  3I4V A;  4ILV A;  3PCD M;  1EOA B;  3T63 M;  3HJQ A;  2BV0 B;  4WHS B;  1EO9 A;  5TD3 A;  2BUR B;  1YKM B;  2BUW A;  3PCN M;  3MI1 M;  4WHP B;  1EO2 A;  1YKP B;  3TH1 A;  3PCG A;  3PCJ M;  4WHO D;  3MI5 M;  1EOA A;  3PCH A;  1EOC B;  2BUX B;  2BV0 A;  4WHS A;  3PCH M;  3LKT A;  1YKM A;  3N9T A;  1YKL B;  2BUQ B;  3PCF A;  3PCK M;  3PCL M;  4WHP A;  1YKP A;  1TMX A;  1S9A A;  3HJS A;  3MV4 A;  1EOC A;  3PCM A;  2PCD A;  1DLQ A;  4WHR B;  3LXV A;  2XSR A;  3PCC A;  3PCI A;  1EOB B;  2BUQ A;  3T67 A;  3PCI M;  3I4Y A;  3HKP A;  4WHS D;  3PCG M;  1DLT A;  2BUT B;  3HGI A;  4WHQ B;  4ILT A;  3O6R A;  2BUR A;  2BUY B;  4WHP D;  1EOB A;  3LKT M;  1DMH A;  3MFL A;  4WHR F;  3PCF M;  3PCA A;  3LMX A;  1YKO B;  3PCB A;  3MV6 A;  2BUT A;  2BUX A;  4WHQ A;  2XSV A;  2BUY A;  3MV4 M;  1YKL A;  3MV6 M;  3PCM M;  2BUU B;  2PCD M; 
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similar chains in the pdb database (?% sequence similarity)

 
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