3O6RA

Crystal structure of 4-chlorocatechol dioxygenase from rhodococcus opacus 1cp in complex with pyrogallol
Total Genus 75

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
75
sequence length
256
structure length
256
Chain Sequence
ANTRVIELFDEFTDLIRDFIVRHEITTPEYETIMQYMISVGEAGEWPLWLDAFFETTVDSVSYGKGNWTSSAIQGPFFKEGAPLLTGKPATLPMRADEPGDRMRFTGSVRDTSGTPITGAVIDVWHSTNDGNYSFFSPALPDQYLLRGRVVPAEDGSIEFHSIRPVPYEIPKAGPTGQLMNSYLGRHSWRPAHIHIRITADGYRPLITQLYFEGDPYLDSDSCSAVKSELVLPVNKIDIDGETWQLVDFNFILQHN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (28-44)TI6 (172-175)AH3 (46-63)S11 (243-254)TIV1 (80-83)EMPTYS7 (194-201)S3 (148-151)TVIII1 (88-91)S4 (158-164)TII1 (96-99)S1 (103-112)TI5 (154-157)TII3 (201-204)TI2 (118-121)S2 (121-126)TIV3 (145-148)TI3 (129-132)TII2 (134-137)TI4 (138-141)S5 (169-170)TI8 (218-221)TIV5 (219-222)S6 (190-191)TII4 (213-216)S8 (204-213)TI9 (222-225)3H1 (229-231)TIV4 (216-219)S10 (236-240)TIV6 (239-242)AH4 (176-183)S9 (232-233)AH1 (4-24)TI1 (112-115)TI7 (183-186)Updating...
connected with : NaN
publication title X-ray structures of 4-chlorocatechol 1,2-dioxygenase adducts with substituted catechols: new perspectives in the molecular basis of intradiol ring cleaving dioxygenases specificity.
pubmed doi rcsb
molecule keywords Chlorocatechol 1,2-dioxygenase
molecule tags Oxidoreductase
total genus 75
structure length 256
sequence length 256
chains with identical sequence B
ec nomenclature ec 1.13.11.-:
pdb deposition date 2010-07-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
A PF04444 Dioxygenase_N Catechol dioxygenase N terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3o6rA00
1YKLB 3MFLM 3PCIA 3I51A 4WHSA 2XSUA 1YKOB 3HJQA 1DLMA 2BUVB 4WHOD 2BUQB 4ILVA 1YKOA 4WHQB 3T67M 2BUVA 3LKTA 2BUQA 1YKNA 3PCHA 3PCAA 2BURB 2BUXB 2PCDA 3PCNA 3PCMM 1EOAB 3PCFM 3MI1M 2BUXA 4WHPA 3PCGM 4WHRF 3T63M 1EOAA 3PCDA 5TD3A 3MFLA 1YKMB 3PCLM 1EOCA 3MI5M 3HKPA 1YKMA 1YKLA 3T67A 4WHOB 4WHQA 3LMXM 3HJSA 3PCEA 1DLTA 4WHRB 1TMXA 2BUMB 2BOYA 2BUYB 3PCFA 3MI1A 3T63A 3PCKM 4WHRA 2BURA 2BUMA 1EO2B 1YKPB 1EOBB 2BV0B 2BUUB 3PCIM 3PCLA 1EOBA 2BV0A 3MI5A 2BUUA 2XSRA 2BUZB 3O6RA 3MV4M 3O32A 4WHPD 1DLQA 3PCCM 3TH1A 3LMXA 3HGIA 3HHXA 1EO9B 2AZQA 2PCDM 3PCBM 4WHOA 3PCMA 4ILTA 3MV6M 4WHSD 3LXVM 3PCGA 3HJ8A 2BUYA 3O6JA 3PCJM 3I4YA 1DMHA 1EO2A 1YKPA 3O5UA 3I4VA 3HHYA 1YKNB 3MV4A 2BUZA 3LKTM 3PCCA 3N9TA 3PCEM 3PCHM 3PCAM 4WHPB 3PCBA 3PCNM 3MV6A 1EO9A 1YKKB 2BUTB 3LXVA 3PCKA 2BUWB 1S9AA 1YKKA 2XSVA 2BUTA 3PCJA 1EOCB 3PCDM 4WHSB 2BUWA
chains in the Genus database with same CATH superfamily
1YKLB 3MFLM 3PCIA 3I51A 4WHSA 2XSUA 1YKOB 3HJQA 1DLMA 2BUVB 4WHOD 2BUQB 4ILVA 1YKOA 4WHQB 3T67M 2BUVA 3LKTA 2BUQA 1YKNA 3PCHA 3PCAA 2BURB 2BUXB 2PCDA 3PCNA 3PCMM 1EOAB 3PCFM 3MI1M 2BUXA 4WHPA 3PCGM 4WHRF 3T63M 1EOAA 3PCDA 5TD3A 3MFLA 1YKMB 3PCLM 1EOCA 3MI5M 3HKPA 1YKMA 1YKLA 3T67A 4WHOB 4WHQA 3LMXM 3HJSA 3PCEA 1DLTA 4WHRB 1TMXA 2BUMB 2BOYA 2BUYB 3PCFA 3MI1A 3T63A 3PCKM 4WHRA 2BURA 2BUMA 1EO2B 1YKPB 1EOBB 2BV0B 2BUUB 3PCIM 3PCLA 1EOBA 2BV0A 3MI5A 2BUUA 2XSRA 2BUZB 3O6RA 3MV4M 3O32A 4WHPD 1DLQA 3PCCM 3TH1A 3LMXA 3HGIA 3HHXA 1EO9B 2AZQA 2PCDM 3PCBM 4WHOA 3PCMA 4ILTA 3MV6M 4WHSD 3LXVM 3PCGA 3HJ8A 2BUYA 3O6JA 3PCJM 3I4YA 1DMHA 1EO2A 1YKPA 3O5UA 3I4VA 3HHYA 1YKNB 3MV4A 2BUZA 3LKTM 3PCCA 3N9TA 3PCEM 3PCHM 3PCAM 4WHPB 3PCBA 3PCNM 3MV6A 1EO9A 1YKKB 2BUTB 3LXVA 3PCKA 2BUWB 1S9AA 1YKKA 2XSVA 2BUTA 3PCJA 1EOCB 3PCDM 4WHSB 2BUWA
chains in the Genus database with same CATH topology
1YKLB 3MFLM 3PCIA 3I51A 4WHSA 2XSUA 1YKOB 3HJQA 1DLMA 2BUVB 4WHOD 2BUQB 4ILVA 1YKOA 4WHQB 3T67M 2BUVA 3LKTA 2BUQA 1YKNA 3PCHA 3PCAA 2BURB 2BUXB 2PCDA 3PCNA 3PCMM 1EOAB 3PCFM 3MI1M 2BUXA 4WHPA 3PCGM 4WHRF 3T63M 1EOAA 3PCDA 5TD3A 3MFLA 1YKMB 3PCLM 1EOCA 3MI5M 3HKPA 1YKMA 1YKLA 3T67A 4WHOB 4WHQA 3LMXM 3HJSA 3PCEA 1DLTA 4WHRB 1TMXA 2BUMB 2BOYA 2BUYB 3PCFA 3MI1A 3T63A 3PCKM 4WHRA 2BURA 2BUMA 1EO2B 1YKPB 1EOBB 2BV0B 2BUUB 3PCIM 3PCLA 1EOBA 2BV0A 3MI5A 2BUUA 2XSRA 2BUZB 3O6RA 3MV4M 3O32A 4WHPD 1DLQA 3PCCM 3TH1A 3LMXA 3HGIA 3HHXA 1EO9B 2AZQA 2PCDM 3PCBM 4WHOA 3PCMA 4ILTA 3MV6M 4WHSD 3LXVM 3PCGA 3HJ8A 2BUYA 3O6JA 3PCJM 3I4YA 1DMHA 1EO2A 1YKPA 3O5UA 3I4VA 3HHYA 1YKNB 3MV4A 2BUZA 3LKTM 3PCCA 3N9TA 3PCEM 3PCHM 3PCAM 4WHPB 3PCBA 3PCNM 3MV6A 1EO9A 1YKKB 2BUTB 3LXVA 3PCKA 2BUWB 1S9AA 1YKKA 2XSVA 2BUTA 3PCJA 1EOCB 3PCDM 4WHSB 2BUWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YKL B;  3MFL M;  3PCI A;  3I51 A;  4WHS A;  2XSU A;  1YKO B;  3HJQ A;  1DLM A;  2BUV B;  4WHO D;  2BUQ B;  4ILV A;  1YKO A;  4WHQ B;  3T67 M;  2BUV A;  3LKT A;  2BUQ A;  1YKN A;  3PCH A;  3PCA A;  2BUR B;  2BUX B;  2PCD A;  3PCN A;  3PCM M;  1EOA B;  3PCF M;  3MI1 M;  2BUX A;  4WHP A;  3PCG M;  4WHR F;  3T63 M;  1EOA A;  3PCD A;  5TD3 A;  3MFL A;  1YKM B;  3PCL M;  1EOC A;  3MI5 M;  3HKP A;  1YKM A;  1YKL A;  3T67 A;  4WHO B;  4WHQ A;  3LMX M;  3HJS A;  3PCE A;  1DLT A;  4WHR B;  1TMX A;  2BUM B;  2BOY A;  2BUY B;  3PCF A;  3MI1 A;  3T63 A;  3PCK M;  4WHR A;  2BUR A;  2BUM A;  1EO2 B;  1YKP B;  1EOB B;  2BV0 B;  2BUU B;  3PCI M;  3PCL A;  1EOB A;  2BV0 A;  3MI5 A;  2BUU A;  2XSR A;  2BUZ B;  3O6R A;  3MV4 M;  3O32 A;  4WHP D;  1DLQ A;  3PCC M;  3TH1 A;  3LMX A;  3HGI A;  3HHX A;  1EO9 B;  2AZQ A;  2PCD M;  3PCB M;  4WHO A;  3PCM A;  4ILT A;  3MV6 M;  4WHS D;  3LXV M;  3PCG A;  3HJ8 A;  2BUY A;  3O6J A;  3PCJ M;  3I4Y A;  1DMH A;  1EO2 A;  1YKP A;  3O5U A;  3I4V A;  3HHY A;  1YKN B;  3MV4 A;  2BUZ A;  3LKT M;  3PCC A;  3N9T A;  3PCE M;  3PCH M;  3PCA M;  4WHP B;  3PCB A;  3PCN M;  3MV6 A;  1EO9 A;  1YKK B;  2BUT B;  3LXV A;  3PCK A;  2BUW B;  1S9A A;  1YKK A;  2XSV A;  2BUT A;  3PCJ A;  1EOC B;  3PCD M;  4WHS B;  2BUW A; 
#chains in the Genus database with same CATH topology
 1YKL B;  3MFL M;  3PCI A;  3I51 A;  4WHS A;  2XSU A;  1YKO B;  3HJQ A;  1DLM A;  2BUV B;  4WHO D;  2BUQ B;  4ILV A;  1YKO A;  4WHQ B;  3T67 M;  2BUV A;  3LKT A;  2BUQ A;  1YKN A;  3PCH A;  3PCA A;  2BUR B;  2BUX B;  2PCD A;  3PCN A;  3PCM M;  1EOA B;  3PCF M;  3MI1 M;  2BUX A;  4WHP A;  3PCG M;  4WHR F;  3T63 M;  1EOA A;  3PCD A;  5TD3 A;  3MFL A;  1YKM B;  3PCL M;  1EOC A;  3MI5 M;  3HKP A;  1YKM A;  1YKL A;  3T67 A;  4WHO B;  4WHQ A;  3LMX M;  3HJS A;  3PCE A;  1DLT A;  4WHR B;  1TMX A;  2BUM B;  2BOY A;  2BUY B;  3PCF A;  3MI1 A;  3T63 A;  3PCK M;  4WHR A;  2BUR A;  2BUM A;  1EO2 B;  1YKP B;  1EOB B;  2BV0 B;  2BUU B;  3PCI M;  3PCL A;  1EOB A;  2BV0 A;  3MI5 A;  2BUU A;  2XSR A;  2BUZ B;  3O6R A;  3MV4 M;  3O32 A;  4WHP D;  1DLQ A;  3PCC M;  3TH1 A;  3LMX A;  3HGI A;  3HHX A;  1EO9 B;  2AZQ A;  2PCD M;  3PCB M;  4WHO A;  3PCM A;  4ILT A;  3MV6 M;  4WHS D;  3LXV M;  3PCG A;  3HJ8 A;  2BUY A;  3O6J A;  3PCJ M;  3I4Y A;  1DMH A;  1EO2 A;  1YKP A;  3O5U A;  3I4V A;  3HHY A;  1YKN B;  3MV4 A;  2BUZ A;  3LKT M;  3PCC A;  3N9T A;  3PCE M;  3PCH M;  3PCA M;  4WHP B;  3PCB A;  3PCN M;  3MV6 A;  1EO9 A;  1YKK B;  2BUT B;  3LXV A;  3PCK A;  2BUW B;  1S9A A;  1YKK A;  2XSV A;  2BUT A;  3PCJ A;  1EOC B;  3PCD M;  4WHS B;  2BUW A; 
#chains in the Genus database with same CATH homology
 1YKL B;  3MFL M;  3PCI A;  3I51 A;  4WHS A;  2XSU A;  1YKO B;  3HJQ A;  1DLM A;  2BUV B;  4WHO D;  2BUQ B;  4ILV A;  1YKO A;  4WHQ B;  3T67 M;  2BUV A;  3LKT A;  2BUQ A;  1YKN A;  3PCH A;  3PCA A;  2BUR B;  2BUX B;  2PCD A;  3PCN A;  3PCM M;  1EOA B;  3PCF M;  3MI1 M;  2BUX A;  4WHP A;  3PCG M;  4WHR F;  3T63 M;  1EOA A;  3PCD A;  5TD3 A;  3MFL A;  1YKM B;  3PCL M;  1EOC A;  3MI5 M;  3HKP A;  1YKM A;  1YKL A;  3T67 A;  4WHO B;  4WHQ A;  3LMX M;  3HJS A;  3PCE A;  1DLT A;  4WHR B;  1TMX A;  2BUM B;  2BOY A;  2BUY B;  3PCF A;  3MI1 A;  3T63 A;  3PCK M;  4WHR A;  2BUR A;  2BUM A;  1EO2 B;  1YKP B;  1EOB B;  2BV0 B;  2BUU B;  3PCI M;  3PCL A;  1EOB A;  2BV0 A;  3MI5 A;  2BUU A;  2XSR A;  2BUZ B;  3O6R A;  3MV4 M;  3O32 A;  4WHP D;  1DLQ A;  3PCC M;  3TH1 A;  3LMX A;  3HGI A;  3HHX A;  1EO9 B;  2AZQ A;  2PCD M;  3PCB M;  4WHO A;  3PCM A;  4ILT A;  3MV6 M;  4WHS D;  3LXV M;  3PCG A;  3HJ8 A;  2BUY A;  3O6J A;  3PCJ M;  3I4Y A;  1DMH A;  1EO2 A;  1YKP A;  3O5U A;  3I4V A;  3HHY A;  1YKN B;  3MV4 A;  2BUZ A;  3LKT M;  3PCC A;  3N9T A;  3PCE M;  3PCH M;  3PCA M;  4WHP B;  3PCB A;  3PCN M;  3MV6 A;  1EO9 A;  1YKK B;  2BUT B;  3LXV A;  3PCK A;  2BUW B;  1S9A A;  1YKK A;  2XSV A;  2BUT A;  3PCJ A;  1EOC B;  3PCD M;  4WHS B;  2BUW A; 
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