3O6R | Genus

Total Genus 75

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	75
sequence length	256
structure length	256
Chain Sequence	ANTRVIELFDEFTDLIRDFIVRHEITTPEYETIMQYMISVGEAGEWPLWLDAFFETTVDSVSYGKGNWTSSAIQGPFFKEGAPLLTGKPATLPMRADEPGDRMRFTGSVRDTSGTPITGAVIDVWHSTNDGNYSFFSPALPDQYLLRGRVVPAEDGSIEFHSIRPVPYEIPKAGPTGQLMNSYLGRHSWRPAHIHIRITADGYRPLITQLYFEGDPYLDSDSCSAVKSELVLPVNKIDIDGETWQLVDFNFILQHN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	X-ray structures of 4-chlorocatechol 1,2-dioxygenase adducts with substituted catechols: new perspectives in the molecular basis of intradiol ring cleaving dioxygenases specificity. pubmed doi rcsb
molecule keywords	Chlorocatechol 1,2-dioxygenase
molecule tags	Oxidoreductase
total genus	75
structure length	256
sequence length	256
chains with identical sequence	B
ec nomenclature	ec 1.13.11.-:
pdb deposition date	2010-07-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00775	Dioxygenase_C	Dioxygenase
A	PF04444	Dioxygenase_N	Catechol dioxygenase N terminus

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.130.10	Mainly Beta	Sandwich	Protocatechuate 3,4-Dioxygenase, subunit A	Aromatic compound dioxygenase	3o6rA00

4ILTA 3PCCA 2XSRA 3PCIA 1EO9A 3MI5M 3TH1A 5TD3A 2BOYA 2BUMB 2BUMA 3PCMM 3I4YA 4WHRB 4WHRA 3MFLM 3MV6A 3T63M 3O6JA 2BUXB 3PCCM 2BUXA 2BUWB 3PCEA 2BUWA 3PCIM 3LMXA 3PCFA 3HHYA 1DLMA 3PCKA 4WHPD 2BUUB 2BUUA 1YKLB 1DMHA 1EO2B 3MV6M 1EO2A 2BUZB 3PCBM 4WHSD 4WHOB 2BUZA 1EO9B 4WHOA 3LXVA 1YKKB 3LMXM 3PCFM 1YKKA 3PCKM 3T67A 3HJ8A 3PCDA 3PCHM 2BUQB 1YKPB 3HHXA 2BUQA 1YKPA 1TMXA 3LXVM 3PCLA 4ILVA 3PCAA 1DLTA 3T67M 3O6RA 1YKMA 2BUYA 1DLQA 3PCDM 3HJSA 2AZQA 3PCEM 1EOAB 3MV4A 1EOAA 4WHPB 3HKPA 4WHPA 3PCNA 3PCLM 4WHRF 3HGIA 1EOCB 3PCJA 1EOCA 3I4VA 3O32A 3N9TA 1EOBB 2PCDA 1EOBA 3PCMA 3MV4M 3I51A 1YKNB 4WHQB 1YKNA 3PCNM 4WHQA 1YKMB 2BUYB 3PCJM 3HJQA 3MI1A 2XSUA 3LKTA 2BUVB 2BUVA 2PCDM 1YKOB 2BURB 1YKOA 2BURA 2BV0B 3O5UA 3PCGA 2BV0A 3PCAM 2BUTB 3T63A 2BUTA 3PCBA 1S9AA 3MI5A 2XSVA 4WHOD 4WHSB 4WHSA 3MI1M 3LKTM 3PCHA 3MFLA 3PCGM 1YKLA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4ILT A;  3PCC A;  2XSR A;  3PCI A;  1EO9 A;  3MI5 M;  3TH1 A;  5TD3 A;  2BOY A;  2BUM B;  2BUM A;  3PCM M;  3I4Y A;  4WHR B;  4WHR A;  3MFL M;  3MV6 A;  3T63 M;  3O6J A;  2BUX B;  3PCC M;  2BUX A;  2BUW B;  3PCE A;  2BUW A;  3PCI M;  3LMX A;  3PCF A;  3HHY A;  1DLM A;  3PCK A;  4WHP D;  2BUU B;  2BUU A;  1YKL B;  1DMH A;  1EO2 B;  3MV6 M;  1EO2 A;  2BUZ B;  3PCB M;  4WHS D;  4WHO B;  2BUZ A;  1EO9 B;  4WHO A;  3LXV A;  1YKK B;  3LMX M;  3PCF M;  1YKK A;  3PCK M;  3T67 A;  3HJ8 A;  3PCD A;  3PCH M;  2BUQ B;  1YKP B;  3HHX A;  2BUQ A;  1YKP A;  1TMX A;  3LXV M;  3PCL A;  4ILV A;  3PCA A;  1DLT A;  3T67 M;  3O6R A;  1YKM A;  2BUY A;  1DLQ A;  3PCD M;  3HJS A;  2AZQ A;  3PCE M;  1EOA B;  3MV4 A;  1EOA A;  4WHP B;  3HKP A;  4WHP A;  3PCN A;  3PCL M;  4WHR F;  3HGI A;  1EOC B;  3PCJ A;  1EOC A;  3I4V A;  3O32 A;  3N9T A;  1EOB B;  2PCD A;  1EOB A;  3PCM A;  3MV4 M;  3I51 A;  1YKN B;  4WHQ B;  1YKN A;  3PCN M;  4WHQ A;  1YKM B;  2BUY B;  3PCJ M;  3HJQ A;  3MI1 A;  2XSU A;  3LKT A;  2BUV B;  2BUV A;  2PCD M;  1YKO B;  2BUR B;  1YKO A;  2BUR A;  2BV0 B;  3O5U A;  3PCG A;  2BV0 A;  3PCA M;  2BUT B;  3T63 A;  2BUT A;  3PCB A;  1S9A A;  3MI5 A;  2XSV A;  4WHO D;  4WHS B;  4WHS A;  3MI1 M;  3LKT M;  3PCH A;  3MFL A;  3PCG M;  1YKL A; 
#chains in the Genus database with same CATH topology
 4ILT A;  3PCC A;  2XSR A;  3PCI A;  1EO9 A;  3MI5 M;  3TH1 A;  5TD3 A;  2BOY A;  2BUM B;  2BUM A;  3PCM M;  3I4Y A;  4WHR B;  4WHR A;  3MFL M;  3MV6 A;  3T63 M;  3O6J A;  2BUX B;  3PCC M;  2BUX A;  2BUW B;  3PCE A;  2BUW A;  3PCI M;  3LMX A;  3PCF A;  3HHY A;  1DLM A;  3PCK A;  4WHP D;  2BUU B;  2BUU A;  1YKL B;  1DMH A;  1EO2 B;  3MV6 M;  1EO2 A;  2BUZ B;  3PCB M;  4WHS D;  4WHO B;  2BUZ A;  1EO9 B;  4WHO A;  3LXV A;  1YKK B;  3LMX M;  3PCF M;  1YKK A;  3PCK M;  3T67 A;  3HJ8 A;  3PCD A;  3PCH M;  2BUQ B;  1YKP B;  3HHX A;  2BUQ A;  1YKP A;  1TMX A;  3LXV M;  3PCL A;  4ILV A;  3PCA A;  1DLT A;  3T67 M;  3O6R A;  1YKM A;  2BUY A;  1DLQ A;  3PCD M;  3HJS A;  2AZQ A;  3PCE M;  1EOA B;  3MV4 A;  1EOA A;  4WHP B;  3HKP A;  4WHP A;  3PCN A;  3PCL M;  4WHR F;  3HGI A;  1EOC B;  3PCJ A;  1EOC A;  3I4V A;  3O32 A;  3N9T A;  1EOB B;  2PCD A;  1EOB A;  3PCM A;  3MV4 M;  3I51 A;  1YKN B;  4WHQ B;  1YKN A;  3PCN M;  4WHQ A;  1YKM B;  2BUY B;  3PCJ M;  3HJQ A;  3MI1 A;  2XSU A;  3LKT A;  2BUV B;  2BUV A;  2PCD M;  1YKO B;  2BUR B;  1YKO A;  2BUR A;  2BV0 B;  3O5U A;  3PCG A;  2BV0 A;  3PCA M;  2BUT B;  3T63 A;  2BUT A;  3PCB A;  1S9A A;  3MI5 A;  2XSV A;  4WHO D;  4WHS B;  4WHS A;  3MI1 M;  3LKT M;  3PCH A;  3MFL A;  3PCG M;  1YKL A; 
#chains in the Genus database with same CATH homology
 4ILT A;  3PCC A;  2XSR A;  3PCI A;  1EO9 A;  3MI5 M;  3TH1 A;  5TD3 A;  2BOY A;  2BUM B;  2BUM A;  3PCM M;  3I4Y A;  4WHR B;  4WHR A;  3MFL M;  3MV6 A;  3T63 M;  3O6J A;  2BUX B;  3PCC M;  2BUX A;  2BUW B;  3PCE A;  2BUW A;  3PCI M;  3LMX A;  3PCF A;  3HHY A;  1DLM A;  3PCK A;  4WHP D;  2BUU B;  2BUU A;  1YKL B;  1DMH A;  1EO2 B;  3MV6 M;  1EO2 A;  2BUZ B;  3PCB M;  4WHS D;  4WHO B;  2BUZ A;  1EO9 B;  4WHO A;  3LXV A;  1YKK B;  3LMX M;  3PCF M;  1YKK A;  3PCK M;  3T67 A;  3HJ8 A;  3PCD A;  3PCH M;  2BUQ B;  1YKP B;  3HHX A;  2BUQ A;  1YKP A;  1TMX A;  3LXV M;  3PCL A;  4ILV A;  3PCA A;  1DLT A;  3T67 M;  3O6R A;  1YKM A;  2BUY A;  1DLQ A;  3PCD M;  3HJS A;  2AZQ A;  3PCE M;  1EOA B;  3MV4 A;  1EOA A;  4WHP B;  3HKP A;  4WHP A;  3PCN A;  3PCL M;  4WHR F;  3HGI A;  1EOC B;  3PCJ A;  1EOC A;  3I4V A;  3O32 A;  3N9T A;  1EOB B;  2PCD A;  1EOB A;  3PCM A;  3MV4 M;  3I51 A;  1YKN B;  4WHQ B;  1YKN A;  3PCN M;  4WHQ A;  1YKM B;  2BUY B;  3PCJ M;  3HJQ A;  3MI1 A;  2XSU A;  3LKT A;  2BUV B;  2BUV A;  2PCD M;  1YKO B;  2BUR B;  1YKO A;  2BUR A;  2BV0 B;  3O5U A;  3PCG A;  2BV0 A;  3PCA M;  2BUT B;  3T63 A;  2BUT A;  3PCB A;  1S9A A;  3MI5 A;  2XSV A;  4WHO D;  4WHS B;  4WHS A;  3MI1 M;  3LKT M;  3PCH A;  3MFL A;  3PCG M;  1YKL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3O6RA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations