3PCBM

Structure of protocatechuate 3,4-dioxygenase complexed with 3-hydroxybenzoate
Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
236
structure length
233
Chain Sequence
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPYPWRNGPNDWRPAHIHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site.
pubmed doi rcsb
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE
molecule tags Dioxygenase
total genus 57
structure length 233
sequence length 236
chains with identical sequence N, O, P, Q, R
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 1997-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00775 Dioxygenase_C Dioxygenase
M PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3pcbM00
3LXVM 1YKPA 3PCLA 2BUUA 3PCKA 3HJQA 3PCJM 3T67A 2BUTA 1DLTA 1EOBB 2BUVB 4WHPB 3PCDA 3PCCM 4WHOA 1EOAB 2BUQA 1TMXA 3T63M 3O6RA 3HGIA 3PCGA 2XSRA 1YKNB 2BUMA 3LMXM 3PCFM 1YKLB 3MI1A 3PCHM 4ILVA 3PCAA 3I51A 2BUZB 3PCBM 1YKMB 3HHXA 3PCMM 4ILTA 4WHPA 2BUXB 2AZQA 2PCDM 3N9TA 4WHSB 4WHRA 4WHSD 2BURB 1EO9A 1YKLA 3PCIA 3PCNM 3PCFA 4WHOD 3MFLM 1EO2B 2BV0A 1YKKB 3MV6A 3MV4M 2XSVA 1EOCB 4WHRF 2BUZA 3MI5M 3LXVA 2BOYA 2BUYB 4WHQB 3LKTM 2BUXA 1YKPB 3PCJA 2BUUB 3O32A 1EOBA 2BUVA 1S9AA 3O5UA 3PCEM 2BUTB 1EOAA 3HJ8A 3PCCA 3TH1A 1YKOB 3PCDM 3T63A 2XSUA 4WHOB 3MFLA 2BUQB 3PCGM 1YKNA 2BUWB 3LMXA 3MI5A 3PCHA 5TD3A 1DLQA 3MI1M 2BUMB 3LKTA 3PCAM 1YKMA 3PCBA 3PCMA 3PCLM 3HHYA 3PCKM 3PCEA 1DLMA 4WHSA 3I4YA 1YKOA 2PCDA 1DMHA 3T67M 2BURA 2BUWA 4WHPD 4WHRB 3PCNA 1EO2A 1YKKA 3I4VA 3HKPA 1EOCA 3MV4A 2BUYA 3O6JA 3PCIM 1EO9B 3MV6M 3HJSA 4WHQA 2BV0B
chains in the Genus database with same CATH superfamily
3LXVM 1YKPA 3PCLA 2BUUA 3PCKA 3HJQA 3PCJM 3T67A 2BUTA 1DLTA 1EOBB 2BUVB 4WHPB 3PCDA 3PCCM 4WHOA 1EOAB 2BUQA 1TMXA 3T63M 3O6RA 3HGIA 3PCGA 2XSRA 1YKNB 2BUMA 3LMXM 3PCFM 1YKLB 3MI1A 3PCHM 4ILVA 3PCAA 3I51A 2BUZB 3PCBM 1YKMB 3HHXA 3PCMM 4ILTA 4WHPA 2BUXB 2AZQA 2PCDM 3N9TA 4WHSB 4WHRA 4WHSD 2BURB 1EO9A 1YKLA 3PCIA 3PCNM 3PCFA 4WHOD 3MFLM 1EO2B 2BV0A 1YKKB 3MV6A 3MV4M 2XSVA 1EOCB 4WHRF 2BUZA 3MI5M 3LXVA 2BOYA 2BUYB 4WHQB 3LKTM 2BUXA 1YKPB 3PCJA 2BUUB 3O32A 1EOBA 2BUVA 1S9AA 3O5UA 3PCEM 2BUTB 1EOAA 3HJ8A 3PCCA 3TH1A 1YKOB 3PCDM 3T63A 2XSUA 4WHOB 3MFLA 2BUQB 3PCGM 1YKNA 2BUWB 3LMXA 3MI5A 3PCHA 5TD3A 1DLQA 3MI1M 2BUMB 3LKTA 3PCAM 1YKMA 3PCBA 3PCMA 3PCLM 3HHYA 3PCKM 3PCEA 1DLMA 4WHSA 3I4YA 1YKOA 2PCDA 1DMHA 3T67M 2BURA 2BUWA 4WHPD 4WHRB 3PCNA 1EO2A 1YKKA 3I4VA 3HKPA 1EOCA 3MV4A 2BUYA 3O6JA 3PCIM 1EO9B 3MV6M 3HJSA 4WHQA 2BV0B
chains in the Genus database with same CATH topology
3LXVM 1YKPA 3PCLA 2BUUA 3PCKA 3HJQA 3PCJM 3T67A 2BUTA 1DLTA 1EOBB 2BUVB 4WHPB 3PCDA 3PCCM 4WHOA 1EOAB 2BUQA 1TMXA 3T63M 3O6RA 3HGIA 3PCGA 2XSRA 1YKNB 2BUMA 3LMXM 3PCFM 1YKLB 3MI1A 3PCHM 4ILVA 3PCAA 3I51A 2BUZB 3PCBM 1YKMB 3HHXA 3PCMM 4ILTA 4WHPA 2BUXB 2AZQA 2PCDM 3N9TA 4WHSB 4WHRA 4WHSD 2BURB 1EO9A 1YKLA 3PCIA 3PCNM 3PCFA 4WHOD 3MFLM 1EO2B 2BV0A 1YKKB 3MV6A 3MV4M 2XSVA 1EOCB 4WHRF 2BUZA 3MI5M 3LXVA 2BOYA 2BUYB 4WHQB 3LKTM 2BUXA 1YKPB 3PCJA 2BUUB 3O32A 1EOBA 2BUVA 1S9AA 3O5UA 3PCEM 2BUTB 1EOAA 3HJ8A 3PCCA 3TH1A 1YKOB 3PCDM 3T63A 2XSUA 4WHOB 3MFLA 2BUQB 3PCGM 1YKNA 2BUWB 3LMXA 3MI5A 3PCHA 5TD3A 1DLQA 3MI1M 2BUMB 3LKTA 3PCAM 1YKMA 3PCBA 3PCMA 3PCLM 3HHYA 3PCKM 3PCEA 1DLMA 4WHSA 3I4YA 1YKOA 2PCDA 1DMHA 3T67M 2BURA 2BUWA 4WHPD 4WHRB 3PCNA 1EO2A 1YKKA 3I4VA 3HKPA 1EOCA 3MV4A 2BUYA 3O6JA 3PCIM 1EO9B 3MV6M 3HJSA 4WHQA 2BV0B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LXV M;  1YKP A;  3PCL A;  2BUU A;  3PCK A;  3HJQ A;  3PCJ M;  3T67 A;  2BUT A;  1DLT A;  1EOB B;  2BUV B;  4WHP B;  3PCD A;  3PCC M;  4WHO A;  1EOA B;  2BUQ A;  1TMX A;  3T63 M;  3O6R A;  3HGI A;  3PCG A;  2XSR A;  1YKN B;  2BUM A;  3LMX M;  3PCF M;  1YKL B;  3MI1 A;  3PCH M;  4ILV A;  3PCA A;  3I51 A;  2BUZ B;  3PCB M;  1YKM B;  3HHX A;  3PCM M;  4ILT A;  4WHP A;  2BUX B;  2AZQ A;  2PCD M;  3N9T A;  4WHS B;  4WHR A;  4WHS D;  2BUR B;  1EO9 A;  1YKL A;  3PCI A;  3PCN M;  3PCF A;  4WHO D;  3MFL M;  1EO2 B;  2BV0 A;  1YKK B;  3MV6 A;  3MV4 M;  2XSV A;  1EOC B;  4WHR F;  2BUZ A;  3MI5 M;  3LXV A;  2BOY A;  2BUY B;  4WHQ B;  3LKT M;  2BUX A;  1YKP B;  3PCJ A;  2BUU B;  3O32 A;  1EOB A;  2BUV A;  1S9A A;  3O5U A;  3PCE M;  2BUT B;  1EOA A;  3HJ8 A;  3PCC A;  3TH1 A;  1YKO B;  3PCD M;  3T63 A;  2XSU A;  4WHO B;  3MFL A;  2BUQ B;  3PCG M;  1YKN A;  2BUW B;  3LMX A;  3MI5 A;  3PCH A;  5TD3 A;  1DLQ A;  3MI1 M;  2BUM B;  3LKT A;  3PCA M;  1YKM A;  3PCB A;  3PCM A;  3PCL M;  3HHY A;  3PCK M;  3PCE A;  1DLM A;  4WHS A;  3I4Y A;  1YKO A;  2PCD A;  1DMH A;  3T67 M;  2BUR A;  2BUW A;  4WHP D;  4WHR B;  3PCN A;  1EO2 A;  1YKK A;  3I4V A;  3HKP A;  1EOC A;  3MV4 A;  2BUY A;  3O6J A;  3PCI M;  1EO9 B;  3MV6 M;  3HJS A;  4WHQ A;  2BV0 B; 
#chains in the Genus database with same CATH topology
 3LXV M;  1YKP A;  3PCL A;  2BUU A;  3PCK A;  3HJQ A;  3PCJ M;  3T67 A;  2BUT A;  1DLT A;  1EOB B;  2BUV B;  4WHP B;  3PCD A;  3PCC M;  4WHO A;  1EOA B;  2BUQ A;  1TMX A;  3T63 M;  3O6R A;  3HGI A;  3PCG A;  2XSR A;  1YKN B;  2BUM A;  3LMX M;  3PCF M;  1YKL B;  3MI1 A;  3PCH M;  4ILV A;  3PCA A;  3I51 A;  2BUZ B;  3PCB M;  1YKM B;  3HHX A;  3PCM M;  4ILT A;  4WHP A;  2BUX B;  2AZQ A;  2PCD M;  3N9T A;  4WHS B;  4WHR A;  4WHS D;  2BUR B;  1EO9 A;  1YKL A;  3PCI A;  3PCN M;  3PCF A;  4WHO D;  3MFL M;  1EO2 B;  2BV0 A;  1YKK B;  3MV6 A;  3MV4 M;  2XSV A;  1EOC B;  4WHR F;  2BUZ A;  3MI5 M;  3LXV A;  2BOY A;  2BUY B;  4WHQ B;  3LKT M;  2BUX A;  1YKP B;  3PCJ A;  2BUU B;  3O32 A;  1EOB A;  2BUV A;  1S9A A;  3O5U A;  3PCE M;  2BUT B;  1EOA A;  3HJ8 A;  3PCC A;  3TH1 A;  1YKO B;  3PCD M;  3T63 A;  2XSU A;  4WHO B;  3MFL A;  2BUQ B;  3PCG M;  1YKN A;  2BUW B;  3LMX A;  3MI5 A;  3PCH A;  5TD3 A;  1DLQ A;  3MI1 M;  2BUM B;  3LKT A;  3PCA M;  1YKM A;  3PCB A;  3PCM A;  3PCL M;  3HHY A;  3PCK M;  3PCE A;  1DLM A;  4WHS A;  3I4Y A;  1YKO A;  2PCD A;  1DMH A;  3T67 M;  2BUR A;  2BUW A;  4WHP D;  4WHR B;  3PCN A;  1EO2 A;  1YKK A;  3I4V A;  3HKP A;  1EOC A;  3MV4 A;  2BUY A;  3O6J A;  3PCI M;  1EO9 B;  3MV6 M;  3HJS A;  4WHQ A;  2BV0 B; 
#chains in the Genus database with same CATH homology
 3LXV M;  1YKP A;  3PCL A;  2BUU A;  3PCK A;  3HJQ A;  3PCJ M;  3T67 A;  2BUT A;  1DLT A;  1EOB B;  2BUV B;  4WHP B;  3PCD A;  3PCC M;  4WHO A;  1EOA B;  2BUQ A;  1TMX A;  3T63 M;  3O6R A;  3HGI A;  3PCG A;  2XSR A;  1YKN B;  2BUM A;  3LMX M;  3PCF M;  1YKL B;  3MI1 A;  3PCH M;  4ILV A;  3PCA A;  3I51 A;  2BUZ B;  3PCB M;  1YKM B;  3HHX A;  3PCM M;  4ILT A;  4WHP A;  2BUX B;  2AZQ A;  2PCD M;  3N9T A;  4WHS B;  4WHR A;  4WHS D;  2BUR B;  1EO9 A;  1YKL A;  3PCI A;  3PCN M;  3PCF A;  4WHO D;  3MFL M;  1EO2 B;  2BV0 A;  1YKK B;  3MV6 A;  3MV4 M;  2XSV A;  1EOC B;  4WHR F;  2BUZ A;  3MI5 M;  3LXV A;  2BOY A;  2BUY B;  4WHQ B;  3LKT M;  2BUX A;  1YKP B;  3PCJ A;  2BUU B;  3O32 A;  1EOB A;  2BUV A;  1S9A A;  3O5U A;  3PCE M;  2BUT B;  1EOA A;  3HJ8 A;  3PCC A;  3TH1 A;  1YKO B;  3PCD M;  3T63 A;  2XSU A;  4WHO B;  3MFL A;  2BUQ B;  3PCG M;  1YKN A;  2BUW B;  3LMX A;  3MI5 A;  3PCH A;  5TD3 A;  1DLQ A;  3MI1 M;  2BUM B;  3LKT A;  3PCA M;  1YKM A;  3PCB A;  3PCM A;  3PCL M;  3HHY A;  3PCK M;  3PCE A;  1DLM A;  4WHS A;  3I4Y A;  1YKO A;  2PCD A;  1DMH A;  3T67 M;  2BUR A;  2BUW A;  4WHP D;  4WHR B;  3PCN A;  1EO2 A;  1YKK A;  3I4V A;  3HKP A;  1EOC A;  3MV4 A;  2BUY A;  3O6J A;  3PCI M;  1EO9 B;  3MV6 M;  3HJS A;  4WHQ A;  2BV0 B; 
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