3PCBM

Structure of protocatechuate 3,4-dioxygenase complexed with 3-hydroxybenzoate
Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
236
structure length
233
Chain Sequence
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPYPWRNGPNDWRPAHIHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site.
pubmed doi rcsb
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE
molecule tags Dioxygenase
total genus 57
structure length 233
sequence length 236
chains with identical sequence N, O, P, Q, R
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 1997-04-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00775 Dioxygenase_C Dioxygenase
M PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3pcbM00
3MFLA 1YKLA 3MV4A 3HGIA 3LXVM 4WHSA 3HJSA 3PCHA 3PCBA 2BURB 3MFLM 2BUQA 2BUYB 3MV4M 2BV0B 3T63A 3HKPA 2BV0A 3PCMA 4WHPA 3PCHM 3N9TA 1EOBA 3PCBM 4WHQB 4WHQA 3T63M 3T67M 1YKNB 3HJQA 1DMHA 1YKNA 2BUVA 2PCDA 2BUUB 2BUUA 4WHRF 2XSVA 2BURA 2PCDM 3PCKA 2BUYA 3PCIA 3PCFA 4ILVA 1EOCB 3HHXA 3PCKM 2BUMB 1YKPB 2BUMA 3PCMM 1YKPA 3I51A 3PCIM 3PCFM 3PCLA 4ILTA 3PCDA 1EOAB 1TMXA 2AZQA 1EOAA 2BUZB 3PCNA 2BUWB 3MV6A 3PCDM 1DLMA 1DLQA 3PCJA 3PCNM 1YKOB 3PCEA 1YKOA 1DLTA 2XSUA 3PCAA 1YKKB 1EOCA 3I4VA 3PCJM 1YKKA 2BOYA 1S9AA 3PCEM 3O6JA 1EO9B 1YKLB 3PCGA 1EO9A 2BUTB 3MI1A 4WHSB 3HHYA 2BUTA 2XSRA 3PCAM 4WHOB 2BUXB 3O32A 3LMXA 4WHOA 2BUQB 2BUXA 3PCCA 3O5UA 3PCGM 1YKMB 3MI1M 3HJ8A 4WHRB 3LKTA 1YKMA 3PCLM 2BUZA 4WHRA 4WHPB 3TH1A 1EOBB 2BUWA 3T67A 3LMXM 4WHSD 3O6RA 3PCCM 3I4YA 4WHOD 3LKTM 3MI5A 3MV6M 5TD3A 1EO2B 1EO2A 4WHPD 3LXVA 3MI5M 2BUVB
chains in the Genus database with same CATH superfamily
3MFLA 1YKLA 3MV4A 3HGIA 3LXVM 4WHSA 3HJSA 3PCHA 3PCBA 2BURB 3MFLM 2BUQA 2BUYB 3MV4M 2BV0B 3T63A 3HKPA 2BV0A 3PCMA 4WHPA 3PCHM 3N9TA 1EOBA 3PCBM 4WHQB 4WHQA 3T63M 3T67M 1YKNB 3HJQA 1DMHA 1YKNA 2BUVA 2PCDA 2BUUB 2BUUA 4WHRF 2XSVA 2BURA 2PCDM 3PCKA 2BUYA 3PCIA 3PCFA 4ILVA 1EOCB 3HHXA 3PCKM 2BUMB 1YKPB 2BUMA 3PCMM 1YKPA 3I51A 3PCIM 3PCFM 3PCLA 4ILTA 3PCDA 1EOAB 1TMXA 2AZQA 1EOAA 2BUZB 3PCNA 2BUWB 3MV6A 3PCDM 1DLMA 1DLQA 3PCJA 3PCNM 1YKOB 3PCEA 1YKOA 1DLTA 2XSUA 3PCAA 1YKKB 1EOCA 3I4VA 3PCJM 1YKKA 2BOYA 1S9AA 3PCEM 3O6JA 1EO9B 1YKLB 3PCGA 1EO9A 2BUTB 3MI1A 4WHSB 3HHYA 2BUTA 2XSRA 3PCAM 4WHOB 2BUXB 3O32A 3LMXA 4WHOA 2BUQB 2BUXA 3PCCA 3O5UA 3PCGM 1YKMB 3MI1M 3HJ8A 4WHRB 3LKTA 1YKMA 3PCLM 2BUZA 4WHRA 4WHPB 3TH1A 1EOBB 2BUWA 3T67A 3LMXM 4WHSD 3O6RA 3PCCM 3I4YA 4WHOD 3LKTM 3MI5A 3MV6M 5TD3A 1EO2B 1EO2A 4WHPD 3LXVA 3MI5M 2BUVB
chains in the Genus database with same CATH topology
3MFLA 1YKLA 3MV4A 3HGIA 3LXVM 4WHSA 3HJSA 3PCHA 3PCBA 2BURB 3MFLM 2BUQA 2BUYB 3MV4M 2BV0B 3T63A 3HKPA 2BV0A 3PCMA 4WHPA 3PCHM 3N9TA 1EOBA 3PCBM 4WHQB 4WHQA 3T63M 3T67M 1YKNB 3HJQA 1DMHA 1YKNA 2BUVA 2PCDA 2BUUB 2BUUA 4WHRF 2XSVA 2BURA 2PCDM 3PCKA 2BUYA 3PCIA 3PCFA 4ILVA 1EOCB 3HHXA 3PCKM 2BUMB 1YKPB 2BUMA 3PCMM 1YKPA 3I51A 3PCIM 3PCFM 3PCLA 4ILTA 3PCDA 1EOAB 1TMXA 2AZQA 1EOAA 2BUZB 3PCNA 2BUWB 3MV6A 3PCDM 1DLMA 1DLQA 3PCJA 3PCNM 1YKOB 3PCEA 1YKOA 1DLTA 2XSUA 3PCAA 1YKKB 1EOCA 3I4VA 3PCJM 1YKKA 2BOYA 1S9AA 3PCEM 3O6JA 1EO9B 1YKLB 3PCGA 1EO9A 2BUTB 3MI1A 4WHSB 3HHYA 2BUTA 2XSRA 3PCAM 4WHOB 2BUXB 3O32A 3LMXA 4WHOA 2BUQB 2BUXA 3PCCA 3O5UA 3PCGM 1YKMB 3MI1M 3HJ8A 4WHRB 3LKTA 1YKMA 3PCLM 2BUZA 4WHRA 4WHPB 3TH1A 1EOBB 2BUWA 3T67A 3LMXM 4WHSD 3O6RA 3PCCM 3I4YA 4WHOD 3LKTM 3MI5A 3MV6M 5TD3A 1EO2B 1EO2A 4WHPD 3LXVA 3MI5M 2BUVB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MFL A;  1YKL A;  3MV4 A;  3HGI A;  3LXV M;  4WHS A;  3HJS A;  3PCH A;  3PCB A;  2BUR B;  3MFL M;  2BUQ A;  2BUY B;  3MV4 M;  2BV0 B;  3T63 A;  3HKP A;  2BV0 A;  3PCM A;  4WHP A;  3PCH M;  3N9T A;  1EOB A;  3PCB M;  4WHQ B;  4WHQ A;  3T63 M;  3T67 M;  1YKN B;  3HJQ A;  1DMH A;  1YKN A;  2BUV A;  2PCD A;  2BUU B;  2BUU A;  4WHR F;  2XSV A;  2BUR A;  2PCD M;  3PCK A;  2BUY A;  3PCI A;  3PCF A;  4ILV A;  1EOC B;  3HHX A;  3PCK M;  2BUM B;  1YKP B;  2BUM A;  3PCM M;  1YKP A;  3I51 A;  3PCI M;  3PCF M;  3PCL A;  4ILT A;  3PCD A;  1EOA B;  1TMX A;  2AZQ A;  1EOA A;  2BUZ B;  3PCN A;  2BUW B;  3MV6 A;  3PCD M;  1DLM A;  1DLQ A;  3PCJ A;  3PCN M;  1YKO B;  3PCE A;  1YKO A;  1DLT A;  2XSU A;  3PCA A;  1YKK B;  1EOC A;  3I4V A;  3PCJ M;  1YKK A;  2BOY A;  1S9A A;  3PCE M;  3O6J A;  1EO9 B;  1YKL B;  3PCG A;  1EO9 A;  2BUT B;  3MI1 A;  4WHS B;  3HHY A;  2BUT A;  2XSR A;  3PCA M;  4WHO B;  2BUX B;  3O32 A;  3LMX A;  4WHO A;  2BUQ B;  2BUX A;  3PCC A;  3O5U A;  3PCG M;  1YKM B;  3MI1 M;  3HJ8 A;  4WHR B;  3LKT A;  1YKM A;  3PCL M;  2BUZ A;  4WHR A;  4WHP B;  3TH1 A;  1EOB B;  2BUW A;  3T67 A;  3LMX M;  4WHS D;  3O6R A;  3PCC M;  3I4Y A;  4WHO D;  3LKT M;  3MI5 A;  3MV6 M;  5TD3 A;  1EO2 B;  1EO2 A;  4WHP D;  3LXV A;  3MI5 M;  2BUV B; 
#chains in the Genus database with same CATH topology
 3MFL A;  1YKL A;  3MV4 A;  3HGI A;  3LXV M;  4WHS A;  3HJS A;  3PCH A;  3PCB A;  2BUR B;  3MFL M;  2BUQ A;  2BUY B;  3MV4 M;  2BV0 B;  3T63 A;  3HKP A;  2BV0 A;  3PCM A;  4WHP A;  3PCH M;  3N9T A;  1EOB A;  3PCB M;  4WHQ B;  4WHQ A;  3T63 M;  3T67 M;  1YKN B;  3HJQ A;  1DMH A;  1YKN A;  2BUV A;  2PCD A;  2BUU B;  2BUU A;  4WHR F;  2XSV A;  2BUR A;  2PCD M;  3PCK A;  2BUY A;  3PCI A;  3PCF A;  4ILV A;  1EOC B;  3HHX A;  3PCK M;  2BUM B;  1YKP B;  2BUM A;  3PCM M;  1YKP A;  3I51 A;  3PCI M;  3PCF M;  3PCL A;  4ILT A;  3PCD A;  1EOA B;  1TMX A;  2AZQ A;  1EOA A;  2BUZ B;  3PCN A;  2BUW B;  3MV6 A;  3PCD M;  1DLM A;  1DLQ A;  3PCJ A;  3PCN M;  1YKO B;  3PCE A;  1YKO A;  1DLT A;  2XSU A;  3PCA A;  1YKK B;  1EOC A;  3I4V A;  3PCJ M;  1YKK A;  2BOY A;  1S9A A;  3PCE M;  3O6J A;  1EO9 B;  1YKL B;  3PCG A;  1EO9 A;  2BUT B;  3MI1 A;  4WHS B;  3HHY A;  2BUT A;  2XSR A;  3PCA M;  4WHO B;  2BUX B;  3O32 A;  3LMX A;  4WHO A;  2BUQ B;  2BUX A;  3PCC A;  3O5U A;  3PCG M;  1YKM B;  3MI1 M;  3HJ8 A;  4WHR B;  3LKT A;  1YKM A;  3PCL M;  2BUZ A;  4WHR A;  4WHP B;  3TH1 A;  1EOB B;  2BUW A;  3T67 A;  3LMX M;  4WHS D;  3O6R A;  3PCC M;  3I4Y A;  4WHO D;  3LKT M;  3MI5 A;  3MV6 M;  5TD3 A;  1EO2 B;  1EO2 A;  4WHP D;  3LXV A;  3MI5 M;  2BUV B; 
#chains in the Genus database with same CATH homology
 3MFL A;  1YKL A;  3MV4 A;  3HGI A;  3LXV M;  4WHS A;  3HJS A;  3PCH A;  3PCB A;  2BUR B;  3MFL M;  2BUQ A;  2BUY B;  3MV4 M;  2BV0 B;  3T63 A;  3HKP A;  2BV0 A;  3PCM A;  4WHP A;  3PCH M;  3N9T A;  1EOB A;  3PCB M;  4WHQ B;  4WHQ A;  3T63 M;  3T67 M;  1YKN B;  3HJQ A;  1DMH A;  1YKN A;  2BUV A;  2PCD A;  2BUU B;  2BUU A;  4WHR F;  2XSV A;  2BUR A;  2PCD M;  3PCK A;  2BUY A;  3PCI A;  3PCF A;  4ILV A;  1EOC B;  3HHX A;  3PCK M;  2BUM B;  1YKP B;  2BUM A;  3PCM M;  1YKP A;  3I51 A;  3PCI M;  3PCF M;  3PCL A;  4ILT A;  3PCD A;  1EOA B;  1TMX A;  2AZQ A;  1EOA A;  2BUZ B;  3PCN A;  2BUW B;  3MV6 A;  3PCD M;  1DLM A;  1DLQ A;  3PCJ A;  3PCN M;  1YKO B;  3PCE A;  1YKO A;  1DLT A;  2XSU A;  3PCA A;  1YKK B;  1EOC A;  3I4V A;  3PCJ M;  1YKK A;  2BOY A;  1S9A A;  3PCE M;  3O6J A;  1EO9 B;  1YKL B;  3PCG A;  1EO9 A;  2BUT B;  3MI1 A;  4WHS B;  3HHY A;  2BUT A;  2XSR A;  3PCA M;  4WHO B;  2BUX B;  3O32 A;  3LMX A;  4WHO A;  2BUQ B;  2BUX A;  3PCC A;  3O5U A;  3PCG M;  1YKM B;  3MI1 M;  3HJ8 A;  4WHR B;  3LKT A;  1YKM A;  3PCL M;  2BUZ A;  4WHR A;  4WHP B;  3TH1 A;  1EOB B;  2BUW A;  3T67 A;  3LMX M;  4WHS D;  3O6R A;  3PCC M;  3I4Y A;  4WHO D;  3LKT M;  3MI5 A;  3MV6 M;  5TD3 A;  1EO2 B;  1EO2 A;  4WHP D;  3LXV A;  3MI5 M;  2BUV B; 
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