3PCCA

Structure of protocatechuate 3,4-dioxygenase complexed with 4-hydroxybenzoate
Total Genus 42
204060801001201401601800510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
200
structure length
200
Chain Sequence
PIELLPETPSQTAGPYVHIGLALEAAGNPTRDQEIWNRLAKPDAPGEHILLLGQVYDGNGHLVRDSFLEVWQADANGEYQDAYNLENAFNSFGRTATTFDAGEWTLHTVKPGVVNNAAGVPMAPHINISLFARGINIHLHTRLYFDDEAQANAKCPVLNLIEQPQRRETLIAKRCEVDGKTAYRFDIRIQGEGETVFFDF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (14-17)AH1 (17-21)TVIII1 (31-34)S5 (92-96)TVIII2 (87-90)TI2 (41-44)S1 (48-57)TIV2 (98-101)TIV1 (63-66)S2 (61-62)TII1 (132-135)S3 (66-74)S4 (78-79)S9 (125-132)TI5 (84-87)S6 (103-109)S12 (180-184)S7 (114-115)S8 (121-122)TI6 (116-119)S10 (135-145)TIV5 (155-158)3H3 (168-170)S11 (171-177)TI7 (145-148)AH2 (149-154)3H2 (158-160)TVIII4 (161-164)AH3 (164-167)TII2 (191-194)S13 (187-188)3H1 (24-26)TI3 (57-60)TI4 (74-77)Updating...
connected with : NaN
publication title Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site.
pubmed doi rcsb
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE
molecule tags Dioxygenase
total genus 42
structure length 200
sequence length 200
chains with identical sequence B, C, D, E, F
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 1997-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3pccA00
3HGIA 2BUUA 3T63A 3MV6M 3PCGA 3PCKA 1EOBA 2BUMA 3O32A 2XSUA 4WHRB 2BUWB 1YKKA 4WHRF 3PCDA 2BUTB 4WHOD 3HJSA 4WHQA 2BUQA 3PCHM 3MI1M 1EO2A 2AZQA 3PCJA 3I4VA 2XSVA 3PCIM 3PCMM 4ILTA 3MV6A 1EOAA 1YKLA 2BUZA 3HHXA 3PCJM 3HHYA 1YKOA 2BUXA 4WHOA 3LMXM 3MI1A 3PCHA 5TD3A 4WHSD 2BUVA 3HKPA 1EOCB 3I4YA 2XSRA 3LXVM 3PCIA 3PCMA 1YKPB 1YKMA 3MI5M 1DMHA 2BUUB 3HJ8A 3PCAA 1EO9A 1EOBB 2BUMB 1YKNA 2BURA 3LMXA 3PCBM 1YKKB 3PCAM 3O6RA 4WHSA 4WHQB 2BUQB 3LXVA 2BUYA 3T67M 2BV0A 1EO2B 3MI5A 1TMXA 4WHPB 3PCEM 1EOAB 1YKLB 2BUZB 2PCDM 3PCBA 4ILVA 1DLMA 1YKOB 2BUXB 3O5UA 3N9TA 4WHRA 3PCFA 2BUWA 3MV4M 3PCNM 3T67A 2BUTA 1YKPA 2BUVB 4WHPD 3TH1A 3PCCA 3LKTA 1YKMB 1DLQA 3PCEA 3MFLM 3PCLM 2BOYA 3PCFM 3I51A 1S9AA 2PCDA 1EO9B 3PCCM 1YKNB 2BURB 3LKTM 3HJQA 3MV4A 3PCNA 3T63M 3PCGM 3PCKM 3O6JA 4WHSB 2BUYB 4WHPA 3PCDM 1DLTA 2BV0B 4WHOB 3MFLA 3PCLA 1EOCA
chains in the Genus database with same CATH superfamily
3HGIA 2BUUA 3T63A 3MV6M 3PCGA 3PCKA 1EOBA 2BUMA 3O32A 2XSUA 4WHRB 2BUWB 1YKKA 4WHRF 3PCDA 2BUTB 4WHOD 3HJSA 4WHQA 2BUQA 3PCHM 3MI1M 1EO2A 2AZQA 3PCJA 3I4VA 2XSVA 3PCIM 3PCMM 4ILTA 3MV6A 1EOAA 1YKLA 2BUZA 3HHXA 3PCJM 3HHYA 1YKOA 2BUXA 4WHOA 3LMXM 3MI1A 3PCHA 5TD3A 4WHSD 2BUVA 3HKPA 1EOCB 3I4YA 2XSRA 3LXVM 3PCIA 3PCMA 1YKPB 1YKMA 3MI5M 1DMHA 2BUUB 3HJ8A 3PCAA 1EO9A 1EOBB 2BUMB 1YKNA 2BURA 3LMXA 3PCBM 1YKKB 3PCAM 3O6RA 4WHSA 4WHQB 2BUQB 3LXVA 2BUYA 3T67M 2BV0A 1EO2B 3MI5A 1TMXA 4WHPB 3PCEM 1EOAB 1YKLB 2BUZB 2PCDM 3PCBA 4ILVA 1DLMA 1YKOB 2BUXB 3O5UA 3N9TA 4WHRA 3PCFA 2BUWA 3MV4M 3PCNM 3T67A 2BUTA 1YKPA 2BUVB 4WHPD 3TH1A 3PCCA 3LKTA 1YKMB 1DLQA 3PCEA 3MFLM 3PCLM 2BOYA 3PCFM 3I51A 1S9AA 2PCDA 1EO9B 3PCCM 1YKNB 2BURB 3LKTM 3HJQA 3MV4A 3PCNA 3T63M 3PCGM 3PCKM 3O6JA 4WHSB 2BUYB 4WHPA 3PCDM 1DLTA 2BV0B 4WHOB 3MFLA 3PCLA 1EOCA
chains in the Genus database with same CATH topology
3HGIA 2BUUA 3T63A 3MV6M 3PCGA 3PCKA 1EOBA 2BUMA 3O32A 2XSUA 4WHRB 2BUWB 1YKKA 4WHRF 3PCDA 2BUTB 4WHOD 3HJSA 4WHQA 2BUQA 3PCHM 3MI1M 1EO2A 2AZQA 3PCJA 3I4VA 2XSVA 3PCIM 3PCMM 4ILTA 3MV6A 1EOAA 1YKLA 2BUZA 3HHXA 3PCJM 3HHYA 1YKOA 2BUXA 4WHOA 3LMXM 3MI1A 3PCHA 5TD3A 4WHSD 2BUVA 3HKPA 1EOCB 3I4YA 2XSRA 3LXVM 3PCIA 3PCMA 1YKPB 1YKMA 3MI5M 1DMHA 2BUUB 3HJ8A 3PCAA 1EO9A 1EOBB 2BUMB 1YKNA 2BURA 3LMXA 3PCBM 1YKKB 3PCAM 3O6RA 4WHSA 4WHQB 2BUQB 3LXVA 2BUYA 3T67M 2BV0A 1EO2B 3MI5A 1TMXA 4WHPB 3PCEM 1EOAB 1YKLB 2BUZB 2PCDM 3PCBA 4ILVA 1DLMA 1YKOB 2BUXB 3O5UA 3N9TA 4WHRA 3PCFA 2BUWA 3MV4M 3PCNM 3T67A 2BUTA 1YKPA 2BUVB 4WHPD 3TH1A 3PCCA 3LKTA 1YKMB 1DLQA 3PCEA 3MFLM 3PCLM 2BOYA 3PCFM 3I51A 1S9AA 2PCDA 1EO9B 3PCCM 1YKNB 2BURB 3LKTM 3HJQA 3MV4A 3PCNA 3T63M 3PCGM 3PCKM 3O6JA 4WHSB 2BUYB 4WHPA 3PCDM 1DLTA 2BV0B 4WHOB 3MFLA 3PCLA 1EOCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HGI A;  2BUU A;  3T63 A;  3MV6 M;  3PCG A;  3PCK A;  1EOB A;  2BUM A;  3O32 A;  2XSU A;  4WHR B;  2BUW B;  1YKK A;  4WHR F;  3PCD A;  2BUT B;  4WHO D;  3HJS A;  4WHQ A;  2BUQ A;  3PCH M;  3MI1 M;  1EO2 A;  2AZQ A;  3PCJ A;  3I4V A;  2XSV A;  3PCI M;  3PCM M;  4ILT A;  3MV6 A;  1EOA A;  1YKL A;  2BUZ A;  3HHX A;  3PCJ M;  3HHY A;  1YKO A;  2BUX A;  4WHO A;  3LMX M;  3MI1 A;  3PCH A;  5TD3 A;  4WHS D;  2BUV A;  3HKP A;  1EOC B;  3I4Y A;  2XSR A;  3LXV M;  3PCI A;  3PCM A;  1YKP B;  1YKM A;  3MI5 M;  1DMH A;  2BUU B;  3HJ8 A;  3PCA A;  1EO9 A;  1EOB B;  2BUM B;  1YKN A;  2BUR A;  3LMX A;  3PCB M;  1YKK B;  3PCA M;  3O6R A;  4WHS A;  4WHQ B;  2BUQ B;  3LXV A;  2BUY A;  3T67 M;  2BV0 A;  1EO2 B;  3MI5 A;  1TMX A;  4WHP B;  3PCE M;  1EOA B;  1YKL B;  2BUZ B;  2PCD M;  3PCB A;  4ILV A;  1DLM A;  1YKO B;  2BUX B;  3O5U A;  3N9T A;  4WHR A;  3PCF A;  2BUW A;  3MV4 M;  3PCN M;  3T67 A;  2BUT A;  1YKP A;  2BUV B;  4WHP D;  3TH1 A;  3PCC A;  3LKT A;  1YKM B;  1DLQ A;  3PCE A;  3MFL M;  3PCL M;  2BOY A;  3PCF M;  3I51 A;  1S9A A;  2PCD A;  1EO9 B;  3PCC M;  1YKN B;  2BUR B;  3LKT M;  3HJQ A;  3MV4 A;  3PCN A;  3T63 M;  3PCG M;  3PCK M;  3O6J A;  4WHS B;  2BUY B;  4WHP A;  3PCD M;  1DLT A;  2BV0 B;  4WHO B;  3MFL A;  3PCL A;  1EOC A; 
#chains in the Genus database with same CATH topology
 3HGI A;  2BUU A;  3T63 A;  3MV6 M;  3PCG A;  3PCK A;  1EOB A;  2BUM A;  3O32 A;  2XSU A;  4WHR B;  2BUW B;  1YKK A;  4WHR F;  3PCD A;  2BUT B;  4WHO D;  3HJS A;  4WHQ A;  2BUQ A;  3PCH M;  3MI1 M;  1EO2 A;  2AZQ A;  3PCJ A;  3I4V A;  2XSV A;  3PCI M;  3PCM M;  4ILT A;  3MV6 A;  1EOA A;  1YKL A;  2BUZ A;  3HHX A;  3PCJ M;  3HHY A;  1YKO A;  2BUX A;  4WHO A;  3LMX M;  3MI1 A;  3PCH A;  5TD3 A;  4WHS D;  2BUV A;  3HKP A;  1EOC B;  3I4Y A;  2XSR A;  3LXV M;  3PCI A;  3PCM A;  1YKP B;  1YKM A;  3MI5 M;  1DMH A;  2BUU B;  3HJ8 A;  3PCA A;  1EO9 A;  1EOB B;  2BUM B;  1YKN A;  2BUR A;  3LMX A;  3PCB M;  1YKK B;  3PCA M;  3O6R A;  4WHS A;  4WHQ B;  2BUQ B;  3LXV A;  2BUY A;  3T67 M;  2BV0 A;  1EO2 B;  3MI5 A;  1TMX A;  4WHP B;  3PCE M;  1EOA B;  1YKL B;  2BUZ B;  2PCD M;  3PCB A;  4ILV A;  1DLM A;  1YKO B;  2BUX B;  3O5U A;  3N9T A;  4WHR A;  3PCF A;  2BUW A;  3MV4 M;  3PCN M;  3T67 A;  2BUT A;  1YKP A;  2BUV B;  4WHP D;  3TH1 A;  3PCC A;  3LKT A;  1YKM B;  1DLQ A;  3PCE A;  3MFL M;  3PCL M;  2BOY A;  3PCF M;  3I51 A;  1S9A A;  2PCD A;  1EO9 B;  3PCC M;  1YKN B;  2BUR B;  3LKT M;  3HJQ A;  3MV4 A;  3PCN A;  3T63 M;  3PCG M;  3PCK M;  3O6J A;  4WHS B;  2BUY B;  4WHP A;  3PCD M;  1DLT A;  2BV0 B;  4WHO B;  3MFL A;  3PCL A;  1EOC A; 
#chains in the Genus database with same CATH homology
 3HGI A;  2BUU A;  3T63 A;  3MV6 M;  3PCG A;  3PCK A;  1EOB A;  2BUM A;  3O32 A;  2XSU A;  4WHR B;  2BUW B;  1YKK A;  4WHR F;  3PCD A;  2BUT B;  4WHO D;  3HJS A;  4WHQ A;  2BUQ A;  3PCH M;  3MI1 M;  1EO2 A;  2AZQ A;  3PCJ A;  3I4V A;  2XSV A;  3PCI M;  3PCM M;  4ILT A;  3MV6 A;  1EOA A;  1YKL A;  2BUZ A;  3HHX A;  3PCJ M;  3HHY A;  1YKO A;  2BUX A;  4WHO A;  3LMX M;  3MI1 A;  3PCH A;  5TD3 A;  4WHS D;  2BUV A;  3HKP A;  1EOC B;  3I4Y A;  2XSR A;  3LXV M;  3PCI A;  3PCM A;  1YKP B;  1YKM A;  3MI5 M;  1DMH A;  2BUU B;  3HJ8 A;  3PCA A;  1EO9 A;  1EOB B;  2BUM B;  1YKN A;  2BUR A;  3LMX A;  3PCB M;  1YKK B;  3PCA M;  3O6R A;  4WHS A;  4WHQ B;  2BUQ B;  3LXV A;  2BUY A;  3T67 M;  2BV0 A;  1EO2 B;  3MI5 A;  1TMX A;  4WHP B;  3PCE M;  1EOA B;  1YKL B;  2BUZ B;  2PCD M;  3PCB A;  4ILV A;  1DLM A;  1YKO B;  2BUX B;  3O5U A;  3N9T A;  4WHR A;  3PCF A;  2BUW A;  3MV4 M;  3PCN M;  3T67 A;  2BUT A;  1YKP A;  2BUV B;  4WHP D;  3TH1 A;  3PCC A;  3LKT A;  1YKM B;  1DLQ A;  3PCE A;  3MFL M;  3PCL M;  2BOY A;  3PCF M;  3I51 A;  1S9A A;  2PCD A;  1EO9 B;  3PCC M;  1YKN B;  2BUR B;  3LKT M;  3HJQ A;  3MV4 A;  3PCN A;  3T63 M;  3PCG M;  3PCK M;  3O6J A;  4WHS B;  2BUY B;  4WHP A;  3PCD M;  1DLT A;  2BV0 B;  4WHO B;  3MFL A;  3PCL A;  1EOC A; 
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