3PCCM

Structure of protocatechuate 3,4-dioxygenase complexed with 4-hydroxybenzoate
Total Genus 55

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
236
structure length
233
Chain Sequence
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPYPWRNGPNDWRPAHIHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site.
pubmed doi rcsb
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE
molecule tags Dioxygenase
total genus 55
structure length 233
sequence length 236
chains with identical sequence N, O, P, Q, R
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 1997-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00775 Dioxygenase_C Dioxygenase
M PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3pccM00
3PCMM 1EO9A 4ILVA 1DLTA 1EO2A 4WHQB 2PCDA 3PCKM 3MI1A 4WHPD 2BUTA 2BUMA 1TMXA 3HJSA 2BOYA 3I51A 3O32A 3PCNM 1YKMB 1EOCA 2BUWA 1YKKA 1EO9B 2BUQA 1EO2B 3MV4M 3PCGA 3PCEM 3PCLA 3PCCA 4WHRA 4WHOD 2BUTB 2BUMB 3PCBM 3T63M 3I4YA 4WHPA 3MV6A 3LMXM 2XSUA 2BURA 3PCAA 1EOCB 2BUWB 1YKKB 2BUXA 3PCJM 2BUQB 3O6RA 3PCHM 3T67M 4WHRB 3MFLA 4ILTA 3LXVA 1EOAA 3HKPA 3LKTA 2PCDM 4WHOA 4WHPB 3MI1M 1YKPA 2BURB 3MI5A 3PCMA 2BUXB 4WHRF 5TD3A 3PCDA 3HJQA 1EOAB 3PCGM 3PCLM 4WHOB 3PCCM 1YKPB 4WHSD 2BUVA 2BV0A 3HHYA 2BUZA 3PCIM 3PCFA 3MV6M 3PCBA 3PCAM 3T63A 3HJ8A 3HHXA 1YKNA 1DLMA 2XSRA 1YKOA 2XSVA 3N9TA 1EOBA 1S9AA 3LXVM 3PCKA 2BUVB 1DLQA 2BV0B 3LKTM 2BUZB 4WHSA 3MI5M 1YKNB 3PCNA 1YKOB 1EOBB 2BUYA 3I4VA 3O5UA 3PCDM 1YKLA 2BUUA 3MV4A 3PCEA 3O6JA 4WHSB 3HGIA 4WHQA 3MFLM 3LMXA 2AZQA 3PCFM 1DMHA 2BUYB 1YKLB 2BUUB 3PCHA 3PCJA 3TH1A 3T67A 3PCIA 1YKMA
chains in the Genus database with same CATH superfamily
3PCMM 1EO9A 4ILVA 1DLTA 1EO2A 4WHQB 2PCDA 3PCKM 3MI1A 4WHPD 2BUTA 2BUMA 1TMXA 3HJSA 2BOYA 3I51A 3O32A 3PCNM 1YKMB 1EOCA 2BUWA 1YKKA 1EO9B 2BUQA 1EO2B 3MV4M 3PCGA 3PCEM 3PCLA 3PCCA 4WHRA 4WHOD 2BUTB 2BUMB 3PCBM 3T63M 3I4YA 4WHPA 3MV6A 3LMXM 2XSUA 2BURA 3PCAA 1EOCB 2BUWB 1YKKB 2BUXA 3PCJM 2BUQB 3O6RA 3PCHM 3T67M 4WHRB 3MFLA 4ILTA 3LXVA 1EOAA 3HKPA 3LKTA 2PCDM 4WHOA 4WHPB 3MI1M 1YKPA 2BURB 3MI5A 3PCMA 2BUXB 4WHRF 5TD3A 3PCDA 3HJQA 1EOAB 3PCGM 3PCLM 4WHOB 3PCCM 1YKPB 4WHSD 2BUVA 2BV0A 3HHYA 2BUZA 3PCIM 3PCFA 3MV6M 3PCBA 3PCAM 3T63A 3HJ8A 3HHXA 1YKNA 1DLMA 2XSRA 1YKOA 2XSVA 3N9TA 1EOBA 1S9AA 3LXVM 3PCKA 2BUVB 1DLQA 2BV0B 3LKTM 2BUZB 4WHSA 3MI5M 1YKNB 3PCNA 1YKOB 1EOBB 2BUYA 3I4VA 3O5UA 3PCDM 1YKLA 2BUUA 3MV4A 3PCEA 3O6JA 4WHSB 3HGIA 4WHQA 3MFLM 3LMXA 2AZQA 3PCFM 1DMHA 2BUYB 1YKLB 2BUUB 3PCHA 3PCJA 3TH1A 3T67A 3PCIA 1YKMA
chains in the Genus database with same CATH topology
3PCMM 1EO9A 4ILVA 1DLTA 1EO2A 4WHQB 2PCDA 3PCKM 3MI1A 4WHPD 2BUTA 2BUMA 1TMXA 3HJSA 2BOYA 3I51A 3O32A 3PCNM 1YKMB 1EOCA 2BUWA 1YKKA 1EO9B 2BUQA 1EO2B 3MV4M 3PCGA 3PCEM 3PCLA 3PCCA 4WHRA 4WHOD 2BUTB 2BUMB 3PCBM 3T63M 3I4YA 4WHPA 3MV6A 3LMXM 2XSUA 2BURA 3PCAA 1EOCB 2BUWB 1YKKB 2BUXA 3PCJM 2BUQB 3O6RA 3PCHM 3T67M 4WHRB 3MFLA 4ILTA 3LXVA 1EOAA 3HKPA 3LKTA 2PCDM 4WHOA 4WHPB 3MI1M 1YKPA 2BURB 3MI5A 3PCMA 2BUXB 4WHRF 5TD3A 3PCDA 3HJQA 1EOAB 3PCGM 3PCLM 4WHOB 3PCCM 1YKPB 4WHSD 2BUVA 2BV0A 3HHYA 2BUZA 3PCIM 3PCFA 3MV6M 3PCBA 3PCAM 3T63A 3HJ8A 3HHXA 1YKNA 1DLMA 2XSRA 1YKOA 2XSVA 3N9TA 1EOBA 1S9AA 3LXVM 3PCKA 2BUVB 1DLQA 2BV0B 3LKTM 2BUZB 4WHSA 3MI5M 1YKNB 3PCNA 1YKOB 1EOBB 2BUYA 3I4VA 3O5UA 3PCDM 1YKLA 2BUUA 3MV4A 3PCEA 3O6JA 4WHSB 3HGIA 4WHQA 3MFLM 3LMXA 2AZQA 3PCFM 1DMHA 2BUYB 1YKLB 2BUUB 3PCHA 3PCJA 3TH1A 3T67A 3PCIA 1YKMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PCM M;  1EO9 A;  4ILV A;  1DLT A;  1EO2 A;  4WHQ B;  2PCD A;  3PCK M;  3MI1 A;  4WHP D;  2BUT A;  2BUM A;  1TMX A;  3HJS A;  2BOY A;  3I51 A;  3O32 A;  3PCN M;  1YKM B;  1EOC A;  2BUW A;  1YKK A;  1EO9 B;  2BUQ A;  1EO2 B;  3MV4 M;  3PCG A;  3PCE M;  3PCL A;  3PCC A;  4WHR A;  4WHO D;  2BUT B;  2BUM B;  3PCB M;  3T63 M;  3I4Y A;  4WHP A;  3MV6 A;  3LMX M;  2XSU A;  2BUR A;  3PCA A;  1EOC B;  2BUW B;  1YKK B;  2BUX A;  3PCJ M;  2BUQ B;  3O6R A;  3PCH M;  3T67 M;  4WHR B;  3MFL A;  4ILT A;  3LXV A;  1EOA A;  3HKP A;  3LKT A;  2PCD M;  4WHO A;  4WHP B;  3MI1 M;  1YKP A;  2BUR B;  3MI5 A;  3PCM A;  2BUX B;  4WHR F;  5TD3 A;  3PCD A;  3HJQ A;  1EOA B;  3PCG M;  3PCL M;  4WHO B;  3PCC M;  1YKP B;  4WHS D;  2BUV A;  2BV0 A;  3HHY A;  2BUZ A;  3PCI M;  3PCF A;  3MV6 M;  3PCB A;  3PCA M;  3T63 A;  3HJ8 A;  3HHX A;  1YKN A;  1DLM A;  2XSR A;  1YKO A;  2XSV A;  3N9T A;  1EOB A;  1S9A A;  3LXV M;  3PCK A;  2BUV B;  1DLQ A;  2BV0 B;  3LKT M;  2BUZ B;  4WHS A;  3MI5 M;  1YKN B;  3PCN A;  1YKO B;  1EOB B;  2BUY A;  3I4V A;  3O5U A;  3PCD M;  1YKL A;  2BUU A;  3MV4 A;  3PCE A;  3O6J A;  4WHS B;  3HGI A;  4WHQ A;  3MFL M;  3LMX A;  2AZQ A;  3PCF M;  1DMH A;  2BUY B;  1YKL B;  2BUU B;  3PCH A;  3PCJ A;  3TH1 A;  3T67 A;  3PCI A;  1YKM A; 
#chains in the Genus database with same CATH topology
 3PCM M;  1EO9 A;  4ILV A;  1DLT A;  1EO2 A;  4WHQ B;  2PCD A;  3PCK M;  3MI1 A;  4WHP D;  2BUT A;  2BUM A;  1TMX A;  3HJS A;  2BOY A;  3I51 A;  3O32 A;  3PCN M;  1YKM B;  1EOC A;  2BUW A;  1YKK A;  1EO9 B;  2BUQ A;  1EO2 B;  3MV4 M;  3PCG A;  3PCE M;  3PCL A;  3PCC A;  4WHR A;  4WHO D;  2BUT B;  2BUM B;  3PCB M;  3T63 M;  3I4Y A;  4WHP A;  3MV6 A;  3LMX M;  2XSU A;  2BUR A;  3PCA A;  1EOC B;  2BUW B;  1YKK B;  2BUX A;  3PCJ M;  2BUQ B;  3O6R A;  3PCH M;  3T67 M;  4WHR B;  3MFL A;  4ILT A;  3LXV A;  1EOA A;  3HKP A;  3LKT A;  2PCD M;  4WHO A;  4WHP B;  3MI1 M;  1YKP A;  2BUR B;  3MI5 A;  3PCM A;  2BUX B;  4WHR F;  5TD3 A;  3PCD A;  3HJQ A;  1EOA B;  3PCG M;  3PCL M;  4WHO B;  3PCC M;  1YKP B;  4WHS D;  2BUV A;  2BV0 A;  3HHY A;  2BUZ A;  3PCI M;  3PCF A;  3MV6 M;  3PCB A;  3PCA M;  3T63 A;  3HJ8 A;  3HHX A;  1YKN A;  1DLM A;  2XSR A;  1YKO A;  2XSV A;  3N9T A;  1EOB A;  1S9A A;  3LXV M;  3PCK A;  2BUV B;  1DLQ A;  2BV0 B;  3LKT M;  2BUZ B;  4WHS A;  3MI5 M;  1YKN B;  3PCN A;  1YKO B;  1EOB B;  2BUY A;  3I4V A;  3O5U A;  3PCD M;  1YKL A;  2BUU A;  3MV4 A;  3PCE A;  3O6J A;  4WHS B;  3HGI A;  4WHQ A;  3MFL M;  3LMX A;  2AZQ A;  3PCF M;  1DMH A;  2BUY B;  1YKL B;  2BUU B;  3PCH A;  3PCJ A;  3TH1 A;  3T67 A;  3PCI A;  1YKM A; 
#chains in the Genus database with same CATH homology
 3PCM M;  1EO9 A;  4ILV A;  1DLT A;  1EO2 A;  4WHQ B;  2PCD A;  3PCK M;  3MI1 A;  4WHP D;  2BUT A;  2BUM A;  1TMX A;  3HJS A;  2BOY A;  3I51 A;  3O32 A;  3PCN M;  1YKM B;  1EOC A;  2BUW A;  1YKK A;  1EO9 B;  2BUQ A;  1EO2 B;  3MV4 M;  3PCG A;  3PCE M;  3PCL A;  3PCC A;  4WHR A;  4WHO D;  2BUT B;  2BUM B;  3PCB M;  3T63 M;  3I4Y A;  4WHP A;  3MV6 A;  3LMX M;  2XSU A;  2BUR A;  3PCA A;  1EOC B;  2BUW B;  1YKK B;  2BUX A;  3PCJ M;  2BUQ B;  3O6R A;  3PCH M;  3T67 M;  4WHR B;  3MFL A;  4ILT A;  3LXV A;  1EOA A;  3HKP A;  3LKT A;  2PCD M;  4WHO A;  4WHP B;  3MI1 M;  1YKP A;  2BUR B;  3MI5 A;  3PCM A;  2BUX B;  4WHR F;  5TD3 A;  3PCD A;  3HJQ A;  1EOA B;  3PCG M;  3PCL M;  4WHO B;  3PCC M;  1YKP B;  4WHS D;  2BUV A;  2BV0 A;  3HHY A;  2BUZ A;  3PCI M;  3PCF A;  3MV6 M;  3PCB A;  3PCA M;  3T63 A;  3HJ8 A;  3HHX A;  1YKN A;  1DLM A;  2XSR A;  1YKO A;  2XSV A;  3N9T A;  1EOB A;  1S9A A;  3LXV M;  3PCK A;  2BUV B;  1DLQ A;  2BV0 B;  3LKT M;  2BUZ B;  4WHS A;  3MI5 M;  1YKN B;  3PCN A;  1YKO B;  1EOB B;  2BUY A;  3I4V A;  3O5U A;  3PCD M;  1YKL A;  2BUU A;  3MV4 A;  3PCE A;  3O6J A;  4WHS B;  3HGI A;  4WHQ A;  3MFL M;  3LMX A;  2AZQ A;  3PCF M;  1DMH A;  2BUY B;  1YKL B;  2BUU B;  3PCH A;  3PCJ A;  3TH1 A;  3T67 A;  3PCI A;  1YKM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.