The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
56
|
sequence length |
236
|
structure length |
233
|
Chain Sequence |
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPHPWRNGPNDWRPAHIHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The axial tyrosinate Fe3+ ligand in protocatechuate 3,4-dioxygenase influences substrate binding and product release: evidence for new reaction cycle intermediates.
pubmed doi rcsb |
| molecule tags |
Dioxygenase
|
| source organism |
Pseudomonas putida
|
| molecule keywords |
PROTOCATECHUATE 3,4-DIOXYGENASE
|
| total genus |
56
|
| structure length |
233
|
| sequence length |
236
|
| chains with identical sequence |
N, O, P, Q, R
|
| ec nomenclature |
ec
1.13.11.3: Protocatechuate 3,4-dioxygenase. |
| pdb deposition date | 1997-11-24 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| M | PF00775 | Dioxygenase_C | Dioxygenase |
| M | PF12391 | PCDO_beta_N | Protocatechuate 3,4-dioxygenase beta subunit N terminal |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Protocatechuate 3,4-Dioxygenase, subunit A | Aromatic compound dioxygenase |
#chains in the Genus database with same CATH superfamily 1YKM A; 3MFL M; 3PCM A; 3PCF A; 3HJS A; 3LKT A; 1EOC A; 3T63 M; 3O5U A; 3PCM M; 1YKP A; 4WHO B; 4WHR A; 2BUU B; 3LKT M; 2XSV A; 1YKM B; 1EOA A; 3O6R A; 2BUR B; 2BUW A; 3MI1 A; 4WHO D; 1YKL B; 4ILV A; 2XSU A; 3MI1 M; 1YKK B; 3PCC A; 5TD3 A; 4WHO A; 2BUU A; 3PCC M; 3T67 A; 4WHS D; 2BUR A; 2BV0 B; 3PCN M; 3PCL A; 2BUT B; 3PCI A; 3T67 M; 3PCB M; 1YKL A; 3LXV A; 1DLT A; 3PCL M; 1YKK A; 3PCI M; 4WHS A; 3LXV M; 3HHY A; 1TMX A; 1DLQ A; 3PCJ M; 3PCK M; 4WHP B; 3MV4 A; 4WHS B; 2BV0 A; 2BUT A; 3PCE M; 3HHX A; 1EO9 B; 2BUV B; 1EOB B; 3MV4 M; 4WHP D; 3PCN A; 1EO2 B; 1YKO A; 3HJQ A; 2BUZ B; 2BUQ A; 3PCB A; 3PCA M; 1DMH A; 1S9A A; 3HGI A; 3I4V A; 4WHP A; 1YKO B; 2BUQ B; 2AZQ A; 3I4Y A; 3MI5 M; 3PCJ A; 3PCK A; 3PCD A; 1EO9 A; 2BUV A; 1EOB A; 1EO2 A; 3MV6 A; 1YKN B; 2BUZ A; 3PCE A; 2XSR A; 3PCD M; 4WHQ B; 3MV6 M; 3PCA A; 3PCG A; 3TH1 A; 2BUM A; 3HKP A; 2BUX B; 2BOY A; 4WHR F; 3PCG M; 3I51 A; 2BUY A; 3PCF M; 3PCH A; 3LMX A; 3MI5 A; 3HJ8 A; 1YKN A; 1EOC B; 2BUM B; 3O32 A; 3PCH M; 3LMX M; 4ILT A; 1YKP B; 4WHQ A; 3N9T A; 4WHR B; 2BUY B; 1EOA B; 2PCD A; 3O6J A; 2BUW B; 2BUX A; 3MFL A; 1DLM A; 2PCD M; 3T63 A; #chains in the Genus database with same CATH topology 1YKM A; 3MFL M; 3PCM A; 3PCF A; 3HJS A; 3LKT A; 1EOC A; 3T63 M; 3O5U A; 3PCM M; 1YKP A; 4WHO B; 4WHR A; 2BUU B; 3LKT M; 2XSV A; 1YKM B; 1EOA A; 3O6R A; 2BUR B; 2BUW A; 3MI1 A; 4WHO D; 1YKL B; 4ILV A; 2XSU A; 3MI1 M; 1YKK B; 3PCC A; 5TD3 A; 4WHO A; 2BUU A; 3PCC M; 3T67 A; 4WHS D; 2BUR A; 2BV0 B; 3PCN M; 3PCL A; 2BUT B; 3PCI A; 3T67 M; 3PCB M; 1YKL A; 3LXV A; 1DLT A; 3PCL M; 1YKK A; 3PCI M; 4WHS A; 3LXV M; 3HHY A; 1TMX A; 1DLQ A; 3PCJ M; 3PCK M; 4WHP B; 3MV4 A; 4WHS B; 2BV0 A; 2BUT A; 3PCE M; 3HHX A; 1EO9 B; 2BUV B; 1EOB B; 3MV4 M; 4WHP D; 3PCN A; 1EO2 B; 1YKO A; 3HJQ A; 2BUZ B; 2BUQ A; 3PCB A; 3PCA M; 1DMH A; 1S9A A; 3HGI A; 3I4V A; 4WHP A; 1YKO B; 2BUQ B; 2AZQ A; 3I4Y A; 3MI5 M; 3PCJ A; 3PCK A; 3PCD A; 1EO9 A; 2BUV A; 1EOB A; 1EO2 A; 3MV6 A; 1YKN B; 2BUZ A; 3PCE A; 2XSR A; 3PCD M; 4WHQ B; 3MV6 M; 3PCA A; 3PCG A; 3TH1 A; 2BUM A; 3HKP A; 2BUX B; 2BOY A; 4WHR F; 3PCG M; 3I51 A; 2BUY A; 3PCF M; 3PCH A; 3LMX A; 3MI5 A; 3HJ8 A; 1YKN A; 1EOC B; 2BUM B; 3O32 A; 3PCH M; 3LMX M; 4ILT A; 1YKP B; 4WHQ A; 3N9T A; 4WHR B; 2BUY B; 1EOA B; 2PCD A; 3O6J A; 2BUW B; 2BUX A; 3MFL A; 1DLM A; 2PCD M; 3T63 A; #chains in the Genus database with same CATH homology 1YKM A; 3MFL M; 3PCM A; 3PCF A; 3HJS A; 3LKT A; 1EOC A; 3T63 M; 3O5U A; 3PCM M; 1YKP A; 4WHO B; 4WHR A; 2BUU B; 3LKT M; 2XSV A; 1YKM B; 1EOA A; 3O6R A; 2BUR B; 2BUW A; 3MI1 A; 4WHO D; 1YKL B; 4ILV A; 2XSU A; 3MI1 M; 1YKK B; 3PCC A; 5TD3 A; 4WHO A; 2BUU A; 3PCC M; 3T67 A; 4WHS D; 2BUR A; 2BV0 B; 3PCN M; 3PCL A; 2BUT B; 3PCI A; 3T67 M; 3PCB M; 1YKL A; 3LXV A; 1DLT A; 3PCL M; 1YKK A; 3PCI M; 4WHS A; 3LXV M; 3HHY A; 1TMX A; 1DLQ A; 3PCJ M; 3PCK M; 4WHP B; 3MV4 A; 4WHS B; 2BV0 A; 2BUT A; 3PCE M; 3HHX A; 1EO9 B; 2BUV B; 1EOB B; 3MV4 M; 4WHP D; 3PCN A; 1EO2 B; 1YKO A; 3HJQ A; 2BUZ B; 2BUQ A; 3PCB A; 3PCA M; 1DMH A; 1S9A A; 3HGI A; 3I4V A; 4WHP A; 1YKO B; 2BUQ B; 2AZQ A; 3I4Y A; 3MI5 M; 3PCJ A; 3PCK A; 3PCD A; 1EO9 A; 2BUV A; 1EOB A; 1EO2 A; 3MV6 A; 1YKN B; 2BUZ A; 3PCE A; 2XSR A; 3PCD M; 4WHQ B; 3MV6 M; 3PCA A; 3PCG A; 3TH1 A; 2BUM A; 3HKP A; 2BUX B; 2BOY A; 4WHR F; 3PCG M; 3I51 A; 2BUY A; 3PCF M; 3PCH A; 3LMX A; 3MI5 A; 3HJ8 A; 1YKN A; 1EOC B; 2BUM B; 3O32 A; 3PCH M; 3LMX M; 4ILT A; 1YKP B; 4WHQ A; 3N9T A; 4WHR B; 2BUY B; 1EOA B; 2PCD A; 3O6J A; 2BUW B; 2BUX A; 3MFL A; 1DLM A; 2PCD M; 3T63 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
