3PCFM

Structure of protocatechuate 3,4-dioxygenase complexed with 3-fluro-4-hydroxybenzoate
Total Genus 58

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
236
structure length
233
Chain Sequence
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRCLTDSDGYYSFRTIKPGPYPWRNGPNDWRPAHIHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structures of competitive inhibitor complexes of protocatechuate 3,4-dioxygenase: multiple exogenous ligand binding orientations within the active site.
pubmed doi rcsb
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE
molecule tags Dioxygenase
total genus 58
structure length 233
sequence length 236
chains with identical sequence N, O, P, Q, R
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 1997-06-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF00775 Dioxygenase_C Dioxygenase
M PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 3pcfM00
3PCEA 4WHRB 3PCHA 3N9TA 2XSUA 1YKOA 3PCLA 3T67A 3PCIM 3MV4M 4WHSB 1EOCA 3PCGA 4WHPA 3LMXM 2BV0A 3LXVA 3T63A 4ILTA 2BUWA 2BUQA 1EOAA 1EOCB 3PCHM 2XSRA 2AZQA 3I51A 3MV4A 2BV0B 3PCDM 3T67M 3TH1A 1YKPA 2BUXA 3PCGM 1YKNB 2BUYA 3PCNA 1EO9A 2BUTB 3LXVM 3O6JA 3T63M 2BUMB 1EOAB 1EOBB 3PCMM 4WHQA 3PCFA 3I4VA 2BUUB 3HHXA 1YKLB 1YKMA 2BURA 2BUZA 3PCDA 1YKKA 4WHOA 4WHPD 3MV6M 3PCKM 2PCDM 3O5UA 3PCAM 1EO2A 3PCNM 3PCMA 1YKOB 3PCBA 1YKMB 1DMHA 3PCFM 2XSVA 4WHPB 3PCCM 3MI1A 3MV6A 3PCKA 2BUWB 2PCDA 3PCAA 2BUQB 2BUVA 3HJSA 3LKTA 3PCBM 1YKPB 2BUXB 2BUYB 3PCCA 1EO9B 3MI5M 2BOYA 3MI1M 4WHOD 4WHQB 5TD3A 4WHRA 1DLQA 3LKTM 2BURB 2BUZB 3I4YA 1S9AA 1YKKB 4WHOB 4WHSA 3MI5A 1EO2B 3MFLM 1DLTA 4WHRF 1TMXA 3PCJM 3HGIA 3HHYA 2BUVB 1YKNA 3MFLA 3PCEM 2BUTA 2BUMA 3O32A 1EOBA 3HKPA 3PCIA 3PCJA 3HJ8A 3PCLM 2BUUA 1YKLA 3LMXA 1DLMA 4ILVA 3O6RA 4WHSD 3HJQA
chains in the Genus database with same CATH superfamily
3PCEA 4WHRB 3PCHA 3N9TA 2XSUA 1YKOA 3PCLA 3T67A 3PCIM 3MV4M 4WHSB 1EOCA 3PCGA 4WHPA 3LMXM 2BV0A 3LXVA 3T63A 4ILTA 2BUWA 2BUQA 1EOAA 1EOCB 3PCHM 2XSRA 2AZQA 3I51A 3MV4A 2BV0B 3PCDM 3T67M 3TH1A 1YKPA 2BUXA 3PCGM 1YKNB 2BUYA 3PCNA 1EO9A 2BUTB 3LXVM 3O6JA 3T63M 2BUMB 1EOAB 1EOBB 3PCMM 4WHQA 3PCFA 3I4VA 2BUUB 3HHXA 1YKLB 1YKMA 2BURA 2BUZA 3PCDA 1YKKA 4WHOA 4WHPD 3MV6M 3PCKM 2PCDM 3O5UA 3PCAM 1EO2A 3PCNM 3PCMA 1YKOB 3PCBA 1YKMB 1DMHA 3PCFM 2XSVA 4WHPB 3PCCM 3MI1A 3MV6A 3PCKA 2BUWB 2PCDA 3PCAA 2BUQB 2BUVA 3HJSA 3LKTA 3PCBM 1YKPB 2BUXB 2BUYB 3PCCA 1EO9B 3MI5M 2BOYA 3MI1M 4WHOD 4WHQB 5TD3A 4WHRA 1DLQA 3LKTM 2BURB 2BUZB 3I4YA 1S9AA 1YKKB 4WHOB 4WHSA 3MI5A 1EO2B 3MFLM 1DLTA 4WHRF 1TMXA 3PCJM 3HGIA 3HHYA 2BUVB 1YKNA 3MFLA 3PCEM 2BUTA 2BUMA 3O32A 1EOBA 3HKPA 3PCIA 3PCJA 3HJ8A 3PCLM 2BUUA 1YKLA 3LMXA 1DLMA 4ILVA 3O6RA 4WHSD 3HJQA
chains in the Genus database with same CATH topology
3PCEA 4WHRB 3PCHA 3N9TA 2XSUA 1YKOA 3PCLA 3T67A 3PCIM 3MV4M 4WHSB 1EOCA 3PCGA 4WHPA 3LMXM 2BV0A 3LXVA 3T63A 4ILTA 2BUWA 2BUQA 1EOAA 1EOCB 3PCHM 2XSRA 2AZQA 3I51A 3MV4A 2BV0B 3PCDM 3T67M 3TH1A 1YKPA 2BUXA 3PCGM 1YKNB 2BUYA 3PCNA 1EO9A 2BUTB 3LXVM 3O6JA 3T63M 2BUMB 1EOAB 1EOBB 3PCMM 4WHQA 3PCFA 3I4VA 2BUUB 3HHXA 1YKLB 1YKMA 2BURA 2BUZA 3PCDA 1YKKA 4WHOA 4WHPD 3MV6M 3PCKM 2PCDM 3O5UA 3PCAM 1EO2A 3PCNM 3PCMA 1YKOB 3PCBA 1YKMB 1DMHA 3PCFM 2XSVA 4WHPB 3PCCM 3MI1A 3MV6A 3PCKA 2BUWB 2PCDA 3PCAA 2BUQB 2BUVA 3HJSA 3LKTA 3PCBM 1YKPB 2BUXB 2BUYB 3PCCA 1EO9B 3MI5M 2BOYA 3MI1M 4WHOD 4WHQB 5TD3A 4WHRA 1DLQA 3LKTM 2BURB 2BUZB 3I4YA 1S9AA 1YKKB 4WHOB 4WHSA 3MI5A 1EO2B 3MFLM 1DLTA 4WHRF 1TMXA 3PCJM 3HGIA 3HHYA 2BUVB 1YKNA 3MFLA 3PCEM 2BUTA 2BUMA 3O32A 1EOBA 3HKPA 3PCIA 3PCJA 3HJ8A 3PCLM 2BUUA 1YKLA 3LMXA 1DLMA 4ILVA 3O6RA 4WHSD 3HJQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PCE A;  4WHR B;  3PCH A;  3N9T A;  2XSU A;  1YKO A;  3PCL A;  3T67 A;  3PCI M;  3MV4 M;  4WHS B;  1EOC A;  3PCG A;  4WHP A;  3LMX M;  2BV0 A;  3LXV A;  3T63 A;  4ILT A;  2BUW A;  2BUQ A;  1EOA A;  1EOC B;  3PCH M;  2XSR A;  2AZQ A;  3I51 A;  3MV4 A;  2BV0 B;  3PCD M;  3T67 M;  3TH1 A;  1YKP A;  2BUX A;  3PCG M;  1YKN B;  2BUY A;  3PCN A;  1EO9 A;  2BUT B;  3LXV M;  3O6J A;  3T63 M;  2BUM B;  1EOA B;  1EOB B;  3PCM M;  4WHQ A;  3PCF A;  3I4V A;  2BUU B;  3HHX A;  1YKL B;  1YKM A;  2BUR A;  2BUZ A;  3PCD A;  1YKK A;  4WHO A;  4WHP D;  3MV6 M;  3PCK M;  2PCD M;  3O5U A;  3PCA M;  1EO2 A;  3PCN M;  3PCM A;  1YKO B;  3PCB A;  1YKM B;  1DMH A;  3PCF M;  2XSV A;  4WHP B;  3PCC M;  3MI1 A;  3MV6 A;  3PCK A;  2BUW B;  2PCD A;  3PCA A;  2BUQ B;  2BUV A;  3HJS A;  3LKT A;  3PCB M;  1YKP B;  2BUX B;  2BUY B;  3PCC A;  1EO9 B;  3MI5 M;  2BOY A;  3MI1 M;  4WHO D;  4WHQ B;  5TD3 A;  4WHR A;  1DLQ A;  3LKT M;  2BUR B;  2BUZ B;  3I4Y A;  1S9A A;  1YKK B;  4WHO B;  4WHS A;  3MI5 A;  1EO2 B;  3MFL M;  1DLT A;  4WHR F;  1TMX A;  3PCJ M;  3HGI A;  3HHY A;  2BUV B;  1YKN A;  3MFL A;  3PCE M;  2BUT A;  2BUM A;  3O32 A;  1EOB A;  3HKP A;  3PCI A;  3PCJ A;  3HJ8 A;  3PCL M;  2BUU A;  1YKL A;  3LMX A;  1DLM A;  4ILV A;  3O6R A;  4WHS D;  3HJQ A; 
#chains in the Genus database with same CATH topology
 3PCE A;  4WHR B;  3PCH A;  3N9T A;  2XSU A;  1YKO A;  3PCL A;  3T67 A;  3PCI M;  3MV4 M;  4WHS B;  1EOC A;  3PCG A;  4WHP A;  3LMX M;  2BV0 A;  3LXV A;  3T63 A;  4ILT A;  2BUW A;  2BUQ A;  1EOA A;  1EOC B;  3PCH M;  2XSR A;  2AZQ A;  3I51 A;  3MV4 A;  2BV0 B;  3PCD M;  3T67 M;  3TH1 A;  1YKP A;  2BUX A;  3PCG M;  1YKN B;  2BUY A;  3PCN A;  1EO9 A;  2BUT B;  3LXV M;  3O6J A;  3T63 M;  2BUM B;  1EOA B;  1EOB B;  3PCM M;  4WHQ A;  3PCF A;  3I4V A;  2BUU B;  3HHX A;  1YKL B;  1YKM A;  2BUR A;  2BUZ A;  3PCD A;  1YKK A;  4WHO A;  4WHP D;  3MV6 M;  3PCK M;  2PCD M;  3O5U A;  3PCA M;  1EO2 A;  3PCN M;  3PCM A;  1YKO B;  3PCB A;  1YKM B;  1DMH A;  3PCF M;  2XSV A;  4WHP B;  3PCC M;  3MI1 A;  3MV6 A;  3PCK A;  2BUW B;  2PCD A;  3PCA A;  2BUQ B;  2BUV A;  3HJS A;  3LKT A;  3PCB M;  1YKP B;  2BUX B;  2BUY B;  3PCC A;  1EO9 B;  3MI5 M;  2BOY A;  3MI1 M;  4WHO D;  4WHQ B;  5TD3 A;  4WHR A;  1DLQ A;  3LKT M;  2BUR B;  2BUZ B;  3I4Y A;  1S9A A;  1YKK B;  4WHO B;  4WHS A;  3MI5 A;  1EO2 B;  3MFL M;  1DLT A;  4WHR F;  1TMX A;  3PCJ M;  3HGI A;  3HHY A;  2BUV B;  1YKN A;  3MFL A;  3PCE M;  2BUT A;  2BUM A;  3O32 A;  1EOB A;  3HKP A;  3PCI A;  3PCJ A;  3HJ8 A;  3PCL M;  2BUU A;  1YKL A;  3LMX A;  1DLM A;  4ILV A;  3O6R A;  4WHS D;  3HJQ A; 
#chains in the Genus database with same CATH homology
 3PCE A;  4WHR B;  3PCH A;  3N9T A;  2XSU A;  1YKO A;  3PCL A;  3T67 A;  3PCI M;  3MV4 M;  4WHS B;  1EOC A;  3PCG A;  4WHP A;  3LMX M;  2BV0 A;  3LXV A;  3T63 A;  4ILT A;  2BUW A;  2BUQ A;  1EOA A;  1EOC B;  3PCH M;  2XSR A;  2AZQ A;  3I51 A;  3MV4 A;  2BV0 B;  3PCD M;  3T67 M;  3TH1 A;  1YKP A;  2BUX A;  3PCG M;  1YKN B;  2BUY A;  3PCN A;  1EO9 A;  2BUT B;  3LXV M;  3O6J A;  3T63 M;  2BUM B;  1EOA B;  1EOB B;  3PCM M;  4WHQ A;  3PCF A;  3I4V A;  2BUU B;  3HHX A;  1YKL B;  1YKM A;  2BUR A;  2BUZ A;  3PCD A;  1YKK A;  4WHO A;  4WHP D;  3MV6 M;  3PCK M;  2PCD M;  3O5U A;  3PCA M;  1EO2 A;  3PCN M;  3PCM A;  1YKO B;  3PCB A;  1YKM B;  1DMH A;  3PCF M;  2XSV A;  4WHP B;  3PCC M;  3MI1 A;  3MV6 A;  3PCK A;  2BUW B;  2PCD A;  3PCA A;  2BUQ B;  2BUV A;  3HJS A;  3LKT A;  3PCB M;  1YKP B;  2BUX B;  2BUY B;  3PCC A;  1EO9 B;  3MI5 M;  2BOY A;  3MI1 M;  4WHO D;  4WHQ B;  5TD3 A;  4WHR A;  1DLQ A;  3LKT M;  2BUR B;  2BUZ B;  3I4Y A;  1S9A A;  1YKK B;  4WHO B;  4WHS A;  3MI5 A;  1EO2 B;  3MFL M;  1DLT A;  4WHR F;  1TMX A;  3PCJ M;  3HGI A;  3HHY A;  2BUV B;  1YKN A;  3MFL A;  3PCE M;  2BUT A;  2BUM A;  3O32 A;  1EOB A;  3HKP A;  3PCI A;  3PCJ A;  3HJ8 A;  3PCL M;  2BUU A;  1YKL A;  3LMX A;  1DLM A;  4ILV A;  3O6R A;  4WHS D;  3HJQ A; 
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