4AAB | Genus

Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	50
sequence length	152
structure length	152
Chain Sequence	NTKYNKEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSNYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__4234533871688524__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__4234533871688524__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/4AAB/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__4234533871688524__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"4234533871688524","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/4AAB/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__4234533871688524__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/dna
source organism	Chlamydomonas reinhardtii
publication title	Non-Specific Protein-DNA Interactions Control I-Crei Target Binding and Cleavage. pubmed doi rcsb
molecule keywords	DNA ENDONUCLEASE I-CREI
total genus	50
structure length	152
sequence length	152
chains with identical sequence	B
ec nomenclature	ec 3.1.-.-:
pdb deposition date	2011-12-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00961	LAGLIDADG_1	LAGLIDADG endonuclease

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.28.10	Alpha Beta	Roll	Endonuclease I-creI	Homing endonucleases	4aabA00

2VBNA 3C0WA 4LQ0A 4LOXA 2VS7A 4EFJA 2FLDA 2I3PA 2CW7A 2CW8A 5E63A 5AKMA 4UN9G 2XE0A 4AQUA 4AAFA 4Z1XA 1DQ3A 2DCHX 5A0MA 5A77A 3MX9A 5A78A 3MXBA 4UN7G 4UN8A 2VBJA 5AKFA 1R7MA 5E67A 5E5OA 2VBLA 4D6NA 5AK9A 1B24A 3EH8A 1DFAA 3C0XA 1LWSA 4AAEA 4UNCA 4UN8G 2VBNB 5AKNA 1AF5A 3MIPA 1MOWA 2VBOA 5A0WA 1BP7A 4AABA 1LWTA 1UM2A 1N3EA 2XE0B 4AQXA 4YITA 5A0MB 4YHXA 2AB5A 5A72A 3MXBB 3OORA 1M5XA 1G9ZA 2VBJB 2I3QA 1P8KZ 3HYJA 1T9JA 4YISA 4D6OA 3KO2A 1G9YA 2VBLB 4UT0A 4UN7A 4AADA 3E54A 3HYIA 1U0CA 4UNAA 3QQYA 3OOLA 1EF0A 1JVAA 4Z1ZA 1VDEA 3MXAA 1N3FA 2O7MA 3FD2A 2QOJZ 2EX5A 4UNBA 4AAGA 4UN9A 1U0DA 5A74A 3MISA 2VS8A 2VBOB 1T9IA 4Z20A 3UVFA 5E5SA 3R7PA
chains in the Genus database with same CATH superfamily

2VBNA 3C0WA 4LQ0A 4LOXA 2VS7A 4EFJA 2FLDA 2I3PA 2CW7A 2CW8A 5E63A 5AKMA 4UN9G 2XE0A 4AQUA 4AAFA 4Z1XA 1DQ3A 2DCHX 5A0MA 5A77A 3MX9A 5A78A 3MXBA 4UN7G 4UN8A 2VBJA 5AKFA 1R7MA 5E67A 5E5OA 2VBLA 4D6NA 5AK9A 1B24A 3EH8A 1DFAA 3C0XA 1LWSA 4AAEA 4UNCA 4UN8G 2VBNB 2F4LA 5AKNA 1AF5A 3MIPA 1MOWA 2VBOA 5A0WA 1BP7A 4AABA 1LWTA 1UM2A 1N3EA 2XE0B 4AQXA 4YITA 5A0MB 4KZSA 4YHXA 2AB5A 5A72A 3MXBB 3OORA 1M5XA 1G9ZA 2VBJB 2I3QA 1P8KZ 3HYJA 1T9JA 4YISA 4D6OA 3KO2A 1G9YA 2VBLB 4UT0A 4UN7A 4AADA 3E54A 3HYIA 1U0CA 4UNAA 3QQYA 3OOLA 1EF0A 1JVAA 4Z1ZA 1VDEA 3MXAA 1N3FA 2O7MA 3FD2A 2QOJZ 2EX5A 4UNBA 4AAGA 4UN9A 1U0DA 5A74A 2VS8A 3MISA 2VBOB 1T9IA 4Z20A 3UVFA 5E5SA 3R7PA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2VBN A;  3C0W A;  4LQ0 A;  4LOX A;  2VS7 A;  4EFJ A;  2FLD A;  2I3P A;  2CW7 A;  2CW8 A;  5E63 A;  5AKM A;  4UN9 G;  2XE0 A;  4AQU A;  4AAF A;  4Z1X A;  1DQ3 A;  2DCH X;  5A0M A;  5A77 A;  3MX9 A;  5A78 A;  3MXB A;  4UN7 G;  4UN8 A;  2VBJ A;  5AKF A;  1R7M A;  5E67 A;  5E5O A;  2VBL A;  4D6N A;  5AK9 A;  1B24 A;  3EH8 A;  1DFA A;  3C0X A;  1LWS A;  4AAE A;  4UNC A;  4UN8 G;  2VBN B;  5AKN A;  1AF5 A;  3MIP A;  1MOW A;  2VBO A;  5A0W A;  1BP7 A;  4AAB A;  1LWT A;  1UM2 A;  1N3E A;  2XE0 B;  4AQX A;  4YIT A;  5A0M B;  4YHX A;  2AB5 A;  5A72 A;  3MXB B;  3OOR A;  1M5X A;  1G9Z A;  2VBJ B;  2I3Q A;  1P8K Z;  3HYJ A;  1T9J A;  4YIS A;  4D6O A;  3KO2 A;  1G9Y A;  2VBL B;  4UT0 A;  4UN7 A;  4AAD A;  3E54 A;  3HYI A;  1U0C A;  4UNA A;  3QQY A;  3OOL A;  1EF0 A;  1JVA A;  4Z1Z A;  1VDE A;  3MXA A;  1N3F A;  2O7M A;  3FD2 A;  2QOJ Z;  2EX5 A;  4UNB A;  4AAG A;  4UN9 A;  1U0D A;  5A74 A;  3MIS A;  2VS8 A;  2VBO B;  1T9I A;  4Z20 A;  3UVF A;  5E5S A;  3R7P A; 
#chains in the Genus database with same CATH topology
 2VBN A;  3C0W A;  4LQ0 A;  4LOX A;  2VS7 A;  4EFJ A;  2FLD A;  2I3P A;  2CW7 A;  2CW8 A;  5E63 A;  5AKM A;  4UN9 G;  2XE0 A;  4AQU A;  4AAF A;  4Z1X A;  1DQ3 A;  2DCH X;  5A0M A;  5A77 A;  3MX9 A;  5A78 A;  3MXB A;  4UN7 G;  4UN8 A;  2VBJ A;  5AKF A;  1R7M A;  5E67 A;  5E5O A;  2VBL A;  4D6N A;  5AK9 A;  1B24 A;  3EH8 A;  1DFA A;  3C0X A;  1LWS A;  4AAE A;  4UNC A;  4UN8 G;  2VBN B;  2F4L A;  5AKN A;  1AF5 A;  3MIP A;  1MOW A;  2VBO A;  5A0W A;  1BP7 A;  4AAB A;  1LWT A;  1UM2 A;  1N3E A;  2XE0 B;  4AQX A;  4YIT A;  5A0M B;  4KZS A;  4YHX A;  2AB5 A;  5A72 A;  3MXB B;  3OOR A;  1M5X A;  1G9Z A;  2VBJ B;  2I3Q A;  1P8K Z;  3HYJ A;  1T9J A;  4YIS A;  4D6O A;  3KO2 A;  1G9Y A;  2VBL B;  4UT0 A;  4UN7 A;  4AAD A;  3E54 A;  3HYI A;  1U0C A;  4UNA A;  3QQY A;  3OOL A;  1EF0 A;  1JVA A;  4Z1Z A;  1VDE A;  3MXA A;  1N3F A;  2O7M A;  3FD2 A;  2QOJ Z;  2EX5 A;  4UNB A;  4AAG A;  4UN9 A;  1U0D A;  5A74 A;  2VS8 A;  3MIS A;  2VBO B;  1T9I A;  4Z20 A;  3UVF A;  5E5S A;  3R7P A; 
#chains in the Genus database with same CATH homology
 2VBN A;  3C0W A;  4LQ0 A;  4LOX A;  2VS7 A;  4EFJ A;  2FLD A;  2I3P A;  2CW7 A;  2CW8 A;  5E63 A;  5AKM A;  4UN9 G;  2XE0 A;  4AQU A;  4AAF A;  4Z1X A;  1DQ3 A;  2DCH X;  5A0M A;  5A77 A;  3MX9 A;  5A78 A;  3MXB A;  4UN7 G;  4UN8 A;  2VBJ A;  5AKF A;  1R7M A;  5E67 A;  5E5O A;  2VBL A;  4D6N A;  5AK9 A;  1B24 A;  3EH8 A;  1DFA A;  3C0X A;  1LWS A;  4AAE A;  4UNC A;  4UN8 G;  2VBN B;  5AKN A;  1AF5 A;  3MIP A;  1MOW A;  2VBO A;  5A0W A;  1BP7 A;  4AAB A;  1LWT A;  1UM2 A;  1N3E A;  2XE0 B;  4AQX A;  4YIT A;  5A0M B;  4YHX A;  2AB5 A;  5A72 A;  3MXB B;  3OOR A;  1M5X A;  1G9Z A;  2VBJ B;  2I3Q A;  1P8K Z;  3HYJ A;  1T9J A;  4YIS A;  4D6O A;  3KO2 A;  1G9Y A;  2VBL B;  4UT0 A;  4UN7 A;  4AAD A;  3E54 A;  3HYI A;  1U0C A;  4UNA A;  3QQY A;  3OOL A;  1EF0 A;  1JVA A;  4Z1Z A;  1VDE A;  3MXA A;  1N3F A;  2O7M A;  3FD2 A;  2QOJ Z;  2EX5 A;  4UNB A;  4AAG A;  4UN9 A;  1U0D A;  5A74 A;  3MIS A;  2VS8 A;  2VBO B;  1T9I A;  4Z20 A;  3UVF A;  5E5S A;  3R7P A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4AABA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations