4AAFA

Crystal structure of the mutant d75n i-crei in complex with an altered target (the four central bases, 2nn region, are composed by tgca from 5' to 3')
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
151
structure length
151
Chain Sequence
NTKYNKEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSNYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (52-62)EMPTYAH5 (119-135)S1 (21-29)TI2 (33-36)AH4 (98-116)TI1 (30-33)S2 (37-48)S3 (66-70)TII'1 (70-73)3H1 (49-51)TIV1 (95-98)AH6 (145-150)S4 (73-78)3H2 (92-94)AH3 (81-91)AH1 (7-20)Updating...
connected with : NaN
molecule tags Hydrolase/dna
source organism Chlamydomonas reinhardtii
publication title Non-Specific Protein-DNA Interactions Control I-Crei Target Binding and Cleavage.
pubmed doi rcsb
molecule keywords DNA ENDONUCLEASE I-CREI
total genus 48
structure length 151
sequence length 151
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2011-12-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4aafA00
4UT0A 1LWTA 1R7MA 1N3FA 5AKMA 2I3QA 4AQXA 3EH8A 2VBLB 1LWSA 4UNAA 4LQ0A 3OORA 3KO2A 3MXBA 4LOXA 5AKNA 4UN7G 4D6OA 4AAEA 2XE0B 1T9JA 2FLDA 3MXBB 3MX9A 2VBJA 4D6NA 3QQYA 4YITA 3MISA 3C0WA 5A0MB 2VS8A 2VBNB 4UN7A 2XE0A 3C0XA 1T9IA 3R7PA 2VBJB 3MIPA 1P8KZ 5E63A 4Z20A 1MOWA 1EF0A 5A0MA 5AKFA 1U0DA 1G9YA 2AB5A 2VBNA 4UN9G 1VDEA 1U0CA 3E54A 5E67A 2I3PA 2DCHX 5AK9A 1N3EA 5A77A 4YHXA 1UM2A 4Z1XA 5A0WA 4UN8G 1AF5A 4AAGA 5E5SA 4UN9A 5A72A 3OOLA 2EX5A 4Z1ZA 3UVFA 1B24A 4AQUA 5A74A 3HYIA 1JVAA 1M5XA 3FD2A 4AABA 4UNCA 4AAFA 4EFJA 4UN8A 4AADA 3HYJA 2VBOA 4YISA 5A78A 1BP7A 2CW8A 2CW7A 4UNBA 1DQ3A 5E5OA 1DFAA 2QOJZ 2VBOB 3MXAA 2VBLA 1G9ZA 2VS7A 2O7MA
chains in the Genus database with same CATH superfamily
4UT0A 1LWTA 1R7MA 1N3FA 5AKMA 2I3QA 4AQXA 3EH8A 2VBLB 1LWSA 4UNAA 2F4LA 4LQ0A 3OORA 3KO2A 3MXBA 4LOXA 5AKNA 4UN7G 4D6OA 4AAEA 2XE0B 1T9JA 2FLDA 3MXBB 3MX9A 2VBJA 4D6NA 3QQYA 4YITA 3MISA 3C0WA 5A0MB 2VS8A 2VBNB 4UN7A 2XE0A 3C0XA 1T9IA 3R7PA 2VBJB 3MIPA 1P8KZ 5E63A 4Z20A 1MOWA 1EF0A 5A0MA 5AKFA 1U0DA 1G9YA 2AB5A 2VBNA 4UN9G 1VDEA 1U0CA 3E54A 5E67A 2I3PA 2DCHX 5AK9A 1N3EA 5A77A 4YHXA 1UM2A 4Z1XA 5A0WA 4UN8G 1AF5A 4AAGA 5E5SA 4UN9A 5A72A 3OOLA 2EX5A 4Z1ZA 3UVFA 1B24A 4KZSA 4AQUA 5A74A 3HYIA 1JVAA 1M5XA 3FD2A 4AABA 4UNCA 4AAFA 4EFJA 4UN8A 4AADA 3HYJA 2VBOA 4YISA 5A78A 1BP7A 2CW8A 2CW7A 4UNBA 1DQ3A 5E5OA 1DFAA 2QOJZ 2VBOB 3MXAA 2VBLA 1G9ZA 2VS7A 2O7MA
chains in the Genus database with same CATH topology
4UT0A 1LWTA 1R7MA 1N3FA 5AKMA 2I3QA 4AQXA 3EH8A 2VBLB 1LWSA 4UNAA 4LQ0A 3OORA 3KO2A 3MXBA 4LOXA 5AKNA 4UN7G 4D6OA 4AAEA 2XE0B 1T9JA 2FLDA 3MXBB 3MX9A 2VBJA 4D6NA 3QQYA 4YITA 3MISA 3C0WA 5A0MB 2VS8A 2VBNB 4UN7A 2XE0A 3C0XA 1T9IA 3R7PA 2VBJB 3MIPA 1P8KZ 5E63A 4Z20A 1MOWA 1EF0A 5A0MA 5AKFA 1U0DA 1G9YA 2AB5A 2VBNA 4UN9G 1VDEA 1U0CA 3E54A 5E67A 2I3PA 2DCHX 5AK9A 1N3EA 5A77A 4YHXA 1UM2A 4Z1XA 5A0WA 4UN8G 1AF5A 4AAGA 5E5SA 4UN9A 5A72A 3OOLA 2EX5A 4Z1ZA 3UVFA 1B24A 4AQUA 5A74A 3HYIA 1JVAA 1M5XA 3FD2A 4AABA 4UNCA 4AAFA 4EFJA 4UN8A 4AADA 3HYJA 2VBOA 4YISA 5A78A 1BP7A 2CW8A 2CW7A 4UNBA 1DQ3A 5E5OA 1DFAA 2QOJZ 2VBOB 3MXAA 2VBLA 1G9ZA 2VS7A 2O7MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UT0 A;  1LWT A;  1R7M A;  1N3F A;  5AKM A;  2I3Q A;  4AQX A;  3EH8 A;  2VBL B;  1LWS A;  4UNA A;  4LQ0 A;  3OOR A;  3KO2 A;  3MXB A;  4LOX A;  5AKN A;  4UN7 G;  4D6O A;  4AAE A;  2XE0 B;  1T9J A;  2FLD A;  3MXB B;  3MX9 A;  2VBJ A;  4D6N A;  3QQY A;  4YIT A;  3MIS A;  3C0W A;  5A0M B;  2VS8 A;  2VBN B;  4UN7 A;  2XE0 A;  3C0X A;  1T9I A;  3R7P A;  2VBJ B;  3MIP A;  1P8K Z;  5E63 A;  4Z20 A;  1MOW A;  1EF0 A;  5A0M A;  5AKF A;  1U0D A;  1G9Y A;  2AB5 A;  2VBN A;  4UN9 G;  1VDE A;  1U0C A;  3E54 A;  5E67 A;  2I3P A;  2DCH X;  5AK9 A;  1N3E A;  5A77 A;  4YHX A;  1UM2 A;  4Z1X A;  5A0W A;  4UN8 G;  1AF5 A;  4AAG A;  5E5S A;  4UN9 A;  5A72 A;  3OOL A;  2EX5 A;  4Z1Z A;  3UVF A;  1B24 A;  4AQU A;  5A74 A;  3HYI A;  1JVA A;  1M5X A;  3FD2 A;  4AAB A;  4UNC A;  4AAF A;  4EFJ A;  4UN8 A;  4AAD A;  3HYJ A;  2VBO A;  4YIS A;  5A78 A;  1BP7 A;  2CW8 A;  2CW7 A;  4UNB A;  1DQ3 A;  5E5O A;  1DFA A;  2QOJ Z;  2VBO B;  3MXA A;  2VBL A;  1G9Z A;  2VS7 A;  2O7M A; 
#chains in the Genus database with same CATH topology
 4UT0 A;  1LWT A;  1R7M A;  1N3F A;  5AKM A;  2I3Q A;  4AQX A;  3EH8 A;  2VBL B;  1LWS A;  4UNA A;  2F4L A;  4LQ0 A;  3OOR A;  3KO2 A;  3MXB A;  4LOX A;  5AKN A;  4UN7 G;  4D6O A;  4AAE A;  2XE0 B;  1T9J A;  2FLD A;  3MXB B;  3MX9 A;  2VBJ A;  4D6N A;  3QQY A;  4YIT A;  3MIS A;  3C0W A;  5A0M B;  2VS8 A;  2VBN B;  4UN7 A;  2XE0 A;  3C0X A;  1T9I A;  3R7P A;  2VBJ B;  3MIP A;  1P8K Z;  5E63 A;  4Z20 A;  1MOW A;  1EF0 A;  5A0M A;  5AKF A;  1U0D A;  1G9Y A;  2AB5 A;  2VBN A;  4UN9 G;  1VDE A;  1U0C A;  3E54 A;  5E67 A;  2I3P A;  2DCH X;  5AK9 A;  1N3E A;  5A77 A;  4YHX A;  1UM2 A;  4Z1X A;  5A0W A;  4UN8 G;  1AF5 A;  4AAG A;  5E5S A;  4UN9 A;  5A72 A;  3OOL A;  2EX5 A;  4Z1Z A;  3UVF A;  1B24 A;  4KZS A;  4AQU A;  5A74 A;  3HYI A;  1JVA A;  1M5X A;  3FD2 A;  4AAB A;  4UNC A;  4AAF A;  4EFJ A;  4UN8 A;  4AAD A;  3HYJ A;  2VBO A;  4YIS A;  5A78 A;  1BP7 A;  2CW8 A;  2CW7 A;  4UNB A;  1DQ3 A;  5E5O A;  1DFA A;  2QOJ Z;  2VBO B;  3MXA A;  2VBL A;  1G9Z A;  2VS7 A;  2O7M A; 
#chains in the Genus database with same CATH homology
 4UT0 A;  1LWT A;  1R7M A;  1N3F A;  5AKM A;  2I3Q A;  4AQX A;  3EH8 A;  2VBL B;  1LWS A;  4UNA A;  4LQ0 A;  3OOR A;  3KO2 A;  3MXB A;  4LOX A;  5AKN A;  4UN7 G;  4D6O A;  4AAE A;  2XE0 B;  1T9J A;  2FLD A;  3MXB B;  3MX9 A;  2VBJ A;  4D6N A;  3QQY A;  4YIT A;  3MIS A;  3C0W A;  5A0M B;  2VS8 A;  2VBN B;  4UN7 A;  2XE0 A;  3C0X A;  1T9I A;  3R7P A;  2VBJ B;  3MIP A;  1P8K Z;  5E63 A;  4Z20 A;  1MOW A;  1EF0 A;  5A0M A;  5AKF A;  1U0D A;  1G9Y A;  2AB5 A;  2VBN A;  4UN9 G;  1VDE A;  1U0C A;  3E54 A;  5E67 A;  2I3P A;  2DCH X;  5AK9 A;  1N3E A;  5A77 A;  4YHX A;  1UM2 A;  4Z1X A;  5A0W A;  4UN8 G;  1AF5 A;  4AAG A;  5E5S A;  4UN9 A;  5A72 A;  3OOL A;  2EX5 A;  4Z1Z A;  3UVF A;  1B24 A;  4AQU A;  5A74 A;  3HYI A;  1JVA A;  1M5X A;  3FD2 A;  4AAB A;  4UNC A;  4AAF A;  4EFJ A;  4UN8 A;  4AAD A;  3HYJ A;  2VBO A;  4YIS A;  5A78 A;  1BP7 A;  2CW8 A;  2CW7 A;  4UNB A;  1DQ3 A;  5E5O A;  1DFA A;  2QOJ Z;  2VBO B;  3MXA A;  2VBL A;  1G9Z A;  2VS7 A;  2O7M A; 
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