4AQXA

Crystal structure of i-crei complexed with its target methylated at position plus 2 (in the b strand) in the presence of magnesium
Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
152
structure length
152
Chain Sequence
NTKYNKEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD
2040608010012014014012010080604020
01020304050Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (52-62)EMPTYAH5 (119-135)S1 (21-29)TI2 (33-36)TI1 (30-33)AH4 (98-116)S2 (37-48)S3 (66-70)TII'1 (70-73)3H1 (49-51)TIV1 (95-98)TI3 (138-141)AH1 (7-20)S4 (73-78)AH3 (81-91)3H2 (92-94)AH6 (145-152)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Chlamydomonas reinhardtii
publication title 5'-Cytosine-Phosphoguanine (Cpg) Methylation Impacts the Activity of Natural and Engineered Meganucleases.
pubmed doi rcsb
molecule keywords DNA ENDONUCLEASE I-CREI
total genus 51
structure length 152
sequence length 152
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2012-04-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4aqxA00
1DQ3A 3HYJA 3QQYA 4AABA 4D6OA 1G9YA 1DFAA 5AKMA 5A0MA 4Z1XA 1G9ZA 4YITA 2VBJA 4UNCA 4UN7A 2VS7A 2I3QA 4UNBA 4UN8G 2VBOB 1R7MA 3E54A 1P8KZ 1UM2A 5E5SA 1VDEA 2FLDA 5A78A 4Z1ZA 5E63A 5A72A 1U0CA 1N3EA 5AK9A 1B24A 2VBLB 3R7PA 2XE0B 2I3PA 4LOXA 1T9JA 1M5XA 5AKNA 2DCHX 4AQUA 2QOJZ 4EFJA 2O7MA 1AF5A 4D6NA 3MX9A 3FD2A 4UN8A 3MXBB 4UT0A 4YISA 4UN9G 3EH8A 2VBNA 5A0MB 3MIPA 5A74A 2AB5A 4AADA 1U0DA 1LWTA 4Z20A 5E67A 4UN9A 2VBJB 5A77A 2VBOA 3OORA 2EX5A 3UVFA 4AAEA 4YHXA 3C0WA 4AAFA 3HYIA 3KO2A 3MISA 1JVAA 1LWSA 2CW7A 5A0WA 2CW8A 1MOWA 4LQ0A 1T9IA 4UN7G 2VBLA 2XE0A 2VS8A 3MXAA 1N3FA 2VBNB 5E5OA 4AQXA 1EF0A 4AAGA 1BP7A 3OOLA 5AKFA 4UNAA 3C0XA 3MXBA
chains in the Genus database with same CATH superfamily
1DQ3A 3HYJA 3QQYA 4AABA 4D6OA 1G9YA 1DFAA 5AKMA 5A0MA 4Z1XA 1G9ZA 4YITA 2VBJA 4UNCA 4UN7A 2VS7A 2I3QA 4UNBA 4UN8G 2VBOB 1R7MA 3E54A 1P8KZ 1UM2A 5E5SA 4KZSA 1VDEA 2FLDA 5A78A 4Z1ZA 5E63A 5A72A 1U0CA 1N3EA 5AK9A 1B24A 2VBLB 3R7PA 2XE0B 2I3PA 4LOXA 1T9JA 1M5XA 5AKNA 2DCHX 4AQUA 2QOJZ 4EFJA 2O7MA 1AF5A 4D6NA 3MX9A 3FD2A 4UN8A 3MXBB 4UT0A 4YISA 4UN9G 3EH8A 2VBNA 5A0MB 3MIPA 5A74A 2AB5A 4AADA 1U0DA 1LWTA 4Z20A 5E67A 4UN9A 2VBJB 5A77A 2VBOA 3OORA 2EX5A 3UVFA 4AAEA 4YHXA 3C0WA 4AAFA 3HYIA 3KO2A 3MISA 1JVAA 1LWSA 2CW7A 5A0WA 2CW8A 1MOWA 4LQ0A 1T9IA 4UN7G 2VBLA 2XE0A 2VS8A 3MXAA 1N3FA 2VBNB 5E5OA 4AQXA 1EF0A 2F4LA 4AAGA 1BP7A 3OOLA 5AKFA 4UNAA 3C0XA 3MXBA
chains in the Genus database with same CATH topology
1DQ3A 3HYJA 3QQYA 4AABA 4D6OA 1G9YA 1DFAA 5AKMA 5A0MA 4Z1XA 1G9ZA 4YITA 2VBJA 4UNCA 4UN7A 2VS7A 2I3QA 4UNBA 4UN8G 2VBOB 1R7MA 3E54A 1P8KZ 1UM2A 5E5SA 1VDEA 2FLDA 5A78A 4Z1ZA 5E63A 5A72A 1U0CA 1N3EA 5AK9A 1B24A 2VBLB 3R7PA 2XE0B 2I3PA 4LOXA 1T9JA 1M5XA 5AKNA 2DCHX 4AQUA 2QOJZ 4EFJA 2O7MA 1AF5A 4D6NA 3MX9A 3FD2A 4UN8A 3MXBB 4UT0A 4YISA 4UN9G 3EH8A 2VBNA 5A0MB 3MIPA 5A74A 2AB5A 4AADA 1U0DA 1LWTA 4Z20A 5E67A 4UN9A 2VBJB 5A77A 2VBOA 3OORA 2EX5A 3UVFA 4AAEA 4YHXA 3C0WA 4AAFA 3HYIA 3KO2A 3MISA 1JVAA 1LWSA 2CW7A 5A0WA 2CW8A 1MOWA 4LQ0A 1T9IA 4UN7G 2VBLA 2XE0A 2VS8A 3MXAA 1N3FA 2VBNB 5E5OA 4AQXA 1EF0A 4AAGA 1BP7A 3OOLA 5AKFA 4UNAA 3C0XA 3MXBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DQ3 A;  3HYJ A;  3QQY A;  4AAB A;  4D6O A;  1G9Y A;  1DFA A;  5AKM A;  5A0M A;  4Z1X A;  1G9Z A;  4YIT A;  2VBJ A;  4UNC A;  4UN7 A;  2VS7 A;  2I3Q A;  4UNB A;  4UN8 G;  2VBO B;  1R7M A;  3E54 A;  1P8K Z;  1UM2 A;  5E5S A;  1VDE A;  2FLD A;  5A78 A;  4Z1Z A;  5E63 A;  5A72 A;  1U0C A;  1N3E A;  5AK9 A;  1B24 A;  2VBL B;  3R7P A;  2XE0 B;  2I3P A;  4LOX A;  1T9J A;  1M5X A;  5AKN A;  2DCH X;  4AQU A;  2QOJ Z;  4EFJ A;  2O7M A;  1AF5 A;  4D6N A;  3MX9 A;  3FD2 A;  4UN8 A;  3MXB B;  4UT0 A;  4YIS A;  4UN9 G;  3EH8 A;  2VBN A;  5A0M B;  3MIP A;  5A74 A;  2AB5 A;  4AAD A;  1U0D A;  1LWT A;  4Z20 A;  5E67 A;  4UN9 A;  2VBJ B;  5A77 A;  2VBO A;  3OOR A;  2EX5 A;  3UVF A;  4AAE A;  4YHX A;  3C0W A;  4AAF A;  3HYI A;  3KO2 A;  3MIS A;  1JVA A;  1LWS A;  2CW7 A;  5A0W A;  2CW8 A;  1MOW A;  4LQ0 A;  1T9I A;  4UN7 G;  2VBL A;  2XE0 A;  2VS8 A;  3MXA A;  1N3F A;  2VBN B;  5E5O A;  4AQX A;  1EF0 A;  4AAG A;  1BP7 A;  3OOL A;  5AKF A;  4UNA A;  3C0X A;  3MXB A; 
#chains in the Genus database with same CATH topology
 1DQ3 A;  3HYJ A;  3QQY A;  4AAB A;  4D6O A;  1G9Y A;  1DFA A;  5AKM A;  5A0M A;  4Z1X A;  1G9Z A;  4YIT A;  2VBJ A;  4UNC A;  4UN7 A;  2VS7 A;  2I3Q A;  4UNB A;  4UN8 G;  2VBO B;  1R7M A;  3E54 A;  1P8K Z;  1UM2 A;  5E5S A;  4KZS A;  1VDE A;  2FLD A;  5A78 A;  4Z1Z A;  5E63 A;  5A72 A;  1U0C A;  1N3E A;  5AK9 A;  1B24 A;  2VBL B;  3R7P A;  2XE0 B;  2I3P A;  4LOX A;  1T9J A;  1M5X A;  5AKN A;  2DCH X;  4AQU A;  2QOJ Z;  4EFJ A;  2O7M A;  1AF5 A;  4D6N A;  3MX9 A;  3FD2 A;  4UN8 A;  3MXB B;  4UT0 A;  4YIS A;  4UN9 G;  3EH8 A;  2VBN A;  5A0M B;  3MIP A;  5A74 A;  2AB5 A;  4AAD A;  1U0D A;  1LWT A;  4Z20 A;  5E67 A;  4UN9 A;  2VBJ B;  5A77 A;  2VBO A;  3OOR A;  2EX5 A;  3UVF A;  4AAE A;  4YHX A;  3C0W A;  4AAF A;  3HYI A;  3KO2 A;  3MIS A;  1JVA A;  1LWS A;  2CW7 A;  5A0W A;  2CW8 A;  1MOW A;  4LQ0 A;  1T9I A;  4UN7 G;  2VBL A;  2XE0 A;  2VS8 A;  3MXA A;  1N3F A;  2VBN B;  5E5O A;  4AQX A;  1EF0 A;  2F4L A;  4AAG A;  1BP7 A;  3OOL A;  5AKF A;  4UNA A;  3C0X A;  3MXB A; 
#chains in the Genus database with same CATH homology
 1DQ3 A;  3HYJ A;  3QQY A;  4AAB A;  4D6O A;  1G9Y A;  1DFA A;  5AKM A;  5A0M A;  4Z1X A;  1G9Z A;  4YIT A;  2VBJ A;  4UNC A;  4UN7 A;  2VS7 A;  2I3Q A;  4UNB A;  4UN8 G;  2VBO B;  1R7M A;  3E54 A;  1P8K Z;  1UM2 A;  5E5S A;  1VDE A;  2FLD A;  5A78 A;  4Z1Z A;  5E63 A;  5A72 A;  1U0C A;  1N3E A;  5AK9 A;  1B24 A;  2VBL B;  3R7P A;  2XE0 B;  2I3P A;  4LOX A;  1T9J A;  1M5X A;  5AKN A;  2DCH X;  4AQU A;  2QOJ Z;  4EFJ A;  2O7M A;  1AF5 A;  4D6N A;  3MX9 A;  3FD2 A;  4UN8 A;  3MXB B;  4UT0 A;  4YIS A;  4UN9 G;  3EH8 A;  2VBN A;  5A0M B;  3MIP A;  5A74 A;  2AB5 A;  4AAD A;  1U0D A;  1LWT A;  4Z20 A;  5E67 A;  4UN9 A;  2VBJ B;  5A77 A;  2VBO A;  3OOR A;  2EX5 A;  3UVF A;  4AAE A;  4YHX A;  3C0W A;  4AAF A;  3HYI A;  3KO2 A;  3MIS A;  1JVA A;  1LWS A;  2CW7 A;  5A0W A;  2CW8 A;  1MOW A;  4LQ0 A;  1T9I A;  4UN7 G;  2VBL A;  2XE0 A;  2VS8 A;  3MXA A;  1N3F A;  2VBN B;  5E5O A;  4AQX A;  1EF0 A;  4AAG A;  1BP7 A;  3OOL A;  5AKF A;  4UNA A;  3C0X A;  3MXB A; 
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