4EFJA

Crystal structure of i-gzeii laglidadg homing endonuclease in complex with dna target site
Total Genus 89

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
291
structure length
291
Chain Sequence
SINPWFVTGFTDAEGSFMIHLEKNKDKWRVRPTFQIKLDIRDKSLLEEIKNYFNNTGSINTSNKECVYKVRSLKDISIIISHFDKYNLITQKKADFELFKKIINKLNSQEHLSYEVGATVLQEIISIRASMNLGLSSSVKEDFPHIIPSNRPLIENMNIPHPEWMAGFVSGEGSFSVYTTSDDKYVSLSFRVSQHNKDKQLLKSFVDFFGCGGFNYHNKGNKAVIFVTRKFEDINDKIIPLFNEYKIKGVKYKDFKDWSKVAKMIESKSHLTTNGYKEICKIKENMNSYRK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (9-18)AH5 (125-134)EMPTYTIV1 (28-31)S1 (21-29)AH4 (96-114)S2 (32-44)S4 (70-75)AH11 (278-290)AH2 (48-57)AH3 (78-90)TIV4 (67-70)S3 (63-66)S5 (118-119)TIV5 (122-125)AH6 (142-147)AH7 (167-177)AH9 (236-249)AH10 (255-272)S6 (178-184)AH8 (204-214)S7 (191-200)S8 (218-221)3H2 (274-276)TIV3 (58-61)TII'1 (136-139)TI1 (185-188)S9 (228-233)TI2 (223-226)TIV6 (200-203)3H1 (45-47)Updating...
connected with : NaN
molecule tags Hydrolase/dna
source organism Gibberella zeae
publication title Crystal structure of I-GzeMII LAGLIDADG homing endonuclease in complex with DNA target site
rcsb
molecule keywords DNA target site top strand
total genus 89
structure length 291
sequence length 291
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2012-03-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4efjA01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4efjA02
2QOJZ 1N3FA 5E67A 3MXBB 4AADA 2VBLA 1U0DA 3HYJA 4UNAA 4EFJA 4AAEA 4UNCA 1EF0A 2XE0B 3KO2A 5AKFA 2CW7A 5AKMA 1T9JA 4Z20A 1T9IA 1R7MA 2VBLB 5AKNA 3E54A 2VBOA 4UN8A 1B24A 1G9YA 4UN9A 1P8KZ 4UN7G 1LWSA 1G9ZA 4YISA 3MISA 5E5OA 2DCHX 4Z1XA 5A0MA 5AK9A 2O7MA 4UN8G 2VBOB 1U0CA 4UT0A 4UN9G 3UVFA 3HYIA 3QQYA 5E63A 1M5XA 3OOLA 5A0WA 4LQ0A 3R7PA 1VDEA 2VBJA 1LWTA 2VBNA 3OORA 5A74A 5A0MB 2VS7A 2I3QA 2EX5A 1BP7A 4LOXA 4AQXA 3MX9A 2AB5A 2FLDA 4D6NA 4D6OA 2VBJB 3EH8A 2VBNB 1MOWA 1AF5A 3C0XA 1DFAA 5A78A 5A72A 3MXAA 4Z1ZA 5A77A 1N3EA 2CW8A 4AABA 4UNBA 3MXBA 2I3PA 4YHXA 5E5SA 4AQUA 4UN7A 1UM2A 2VS8A 2XE0A 3C0WA 4AAGA 1JVAA 3MIPA 4YITA 3FD2A 4AAFA 1DQ3A
chains in the Genus database with same CATH superfamily
2QOJZ 1N3FA 5E67A 3MXBB 4AADA 2VBLA 1U0DA 3HYJA 4UNAA 4EFJA 4AAEA 4UNCA 1EF0A 2XE0B 3KO2A 5AKFA 2CW7A 5AKMA 1T9JA 4Z20A 1T9IA 1R7MA 2VBLB 5AKNA 3E54A 2VBOA 4UN8A 4KZSA 1B24A 4UN9A 1G9YA 1P8KZ 4UN7G 1LWSA 1G9ZA 4YISA 3MISA 5E5OA 2DCHX 4Z1XA 5A0MA 5AK9A 2O7MA 4UN8G 2VBOB 1U0CA 4UT0A 4UN9G 3UVFA 3HYIA 3QQYA 5E63A 1M5XA 3OOLA 5A0WA 4LQ0A 3R7PA 1VDEA 2VBJA 1LWTA 2VBNA 3OORA 5A74A 5A0MB 2VS7A 2I3QA 2EX5A 1BP7A 4LOXA 4AQXA 3MX9A 2AB5A 2FLDA 4D6NA 4D6OA 2VBJB 3EH8A 2VBNB 1MOWA 1AF5A 3C0XA 1DFAA 5A78A 5A72A 3MXAA 4Z1ZA 2F4LA 5A77A 1N3EA 2CW8A 4AABA 4UNBA 3MXBA 2I3PA 4YHXA 5E5SA 4AQUA 4UN7A 1UM2A 2VS8A 2XE0A 3C0WA 4AAGA 1JVAA 3MIPA 4YITA 3FD2A 4AAFA 1DQ3A
chains in the Genus database with same CATH topology
2QOJZ 1N3FA 5E67A 3MXBB 4AADA 2VBLA 1U0DA 3HYJA 4UNAA 4EFJA 4AAEA 4UNCA 1EF0A 2XE0B 3KO2A 5AKFA 2CW7A 5AKMA 1T9JA 4Z20A 1T9IA 1R7MA 2VBLB 5AKNA 3E54A 2VBOA 4UN8A 1B24A 1G9YA 4UN9A 1P8KZ 4UN7G 1LWSA 1G9ZA 4YISA 3MISA 5E5OA 2DCHX 4Z1XA 5A0MA 5AK9A 2O7MA 4UN8G 2VBOB 1U0CA 4UT0A 4UN9G 3UVFA 3HYIA 3QQYA 5E63A 1M5XA 3OOLA 5A0WA 4LQ0A 3R7PA 1VDEA 2VBJA 1LWTA 2VBNA 3OORA 5A74A 5A0MB 2VS7A 2I3QA 2EX5A 1BP7A 4LOXA 4AQXA 3MX9A 2AB5A 2FLDA 4D6NA 4D6OA 2VBJB 3EH8A 2VBNB 1MOWA 1AF5A 3C0XA 1DFAA 5A78A 5A72A 3MXAA 4Z1ZA 5A77A 1N3EA 2CW8A 4AABA 4UNBA 3MXBA 2I3PA 4YHXA 5E5SA 4AQUA 4UN7A 1UM2A 2VS8A 2XE0A 3C0WA 4AAGA 1JVAA 3MIPA 4YITA 3FD2A 4AAFA 1DQ3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QOJ Z;  1N3F A;  5E67 A;  3MXB B;  4AAD A;  2VBL A;  1U0D A;  3HYJ A;  4UNA A;  4EFJ A;  4AAE A;  4UNC A;  1EF0 A;  2XE0 B;  3KO2 A;  5AKF A;  2CW7 A;  5AKM A;  1T9J A;  4Z20 A;  1T9I A;  1R7M A;  2VBL B;  5AKN A;  3E54 A;  2VBO A;  4UN8 A;  1B24 A;  1G9Y A;  4UN9 A;  1P8K Z;  4UN7 G;  1LWS A;  1G9Z A;  4YIS A;  3MIS A;  5E5O A;  2DCH X;  4Z1X A;  5A0M A;  5AK9 A;  2O7M A;  4UN8 G;  2VBO B;  1U0C A;  4UT0 A;  4UN9 G;  3UVF A;  3HYI A;  3QQY A;  5E63 A;  1M5X A;  3OOL A;  5A0W A;  4LQ0 A;  3R7P A;  1VDE A;  2VBJ A;  1LWT A;  2VBN A;  3OOR A;  5A74 A;  5A0M B;  2VS7 A;  2I3Q A;  2EX5 A;  1BP7 A;  4LOX A;  4AQX A;  3MX9 A;  2AB5 A;  2FLD A;  4D6N A;  4D6O A;  2VBJ B;  3EH8 A;  2VBN B;  1MOW A;  1AF5 A;  3C0X A;  1DFA A;  5A78 A;  5A72 A;  3MXA A;  4Z1Z A;  5A77 A;  1N3E A;  2CW8 A;  4AAB A;  4UNB A;  3MXB A;  2I3P A;  4YHX A;  5E5S A;  4AQU A;  4UN7 A;  1UM2 A;  2VS8 A;  2XE0 A;  3C0W A;  4AAG A;  1JVA A;  3MIP A;  4YIT A;  3FD2 A;  4AAF A;  1DQ3 A; 
#chains in the Genus database with same CATH topology
 2QOJ Z;  1N3F A;  5E67 A;  3MXB B;  4AAD A;  2VBL A;  1U0D A;  3HYJ A;  4UNA A;  4EFJ A;  4AAE A;  4UNC A;  1EF0 A;  2XE0 B;  3KO2 A;  5AKF A;  2CW7 A;  5AKM A;  1T9J A;  4Z20 A;  1T9I A;  1R7M A;  2VBL B;  5AKN A;  3E54 A;  2VBO A;  4UN8 A;  4KZS A;  1B24 A;  4UN9 A;  1G9Y A;  1P8K Z;  4UN7 G;  1LWS A;  1G9Z A;  4YIS A;  3MIS A;  5E5O A;  2DCH X;  4Z1X A;  5A0M A;  5AK9 A;  2O7M A;  4UN8 G;  2VBO B;  1U0C A;  4UT0 A;  4UN9 G;  3UVF A;  3HYI A;  3QQY A;  5E63 A;  1M5X A;  3OOL A;  5A0W A;  4LQ0 A;  3R7P A;  1VDE A;  2VBJ A;  1LWT A;  2VBN A;  3OOR A;  5A74 A;  5A0M B;  2VS7 A;  2I3Q A;  2EX5 A;  1BP7 A;  4LOX A;  4AQX A;  3MX9 A;  2AB5 A;  2FLD A;  4D6N A;  4D6O A;  2VBJ B;  3EH8 A;  2VBN B;  1MOW A;  1AF5 A;  3C0X A;  1DFA A;  5A78 A;  5A72 A;  3MXA A;  4Z1Z A;  2F4L A;  5A77 A;  1N3E A;  2CW8 A;  4AAB A;  4UNB A;  3MXB A;  2I3P A;  4YHX A;  5E5S A;  4AQU A;  4UN7 A;  1UM2 A;  2VS8 A;  2XE0 A;  3C0W A;  4AAG A;  1JVA A;  3MIP A;  4YIT A;  3FD2 A;  4AAF A;  1DQ3 A; 
#chains in the Genus database with same CATH homology
 2QOJ Z;  1N3F A;  5E67 A;  3MXB B;  4AAD A;  2VBL A;  1U0D A;  3HYJ A;  4UNA A;  4EFJ A;  4AAE A;  4UNC A;  1EF0 A;  2XE0 B;  3KO2 A;  5AKF A;  2CW7 A;  5AKM A;  1T9J A;  4Z20 A;  1T9I A;  1R7M A;  2VBL B;  5AKN A;  3E54 A;  2VBO A;  4UN8 A;  1B24 A;  1G9Y A;  4UN9 A;  1P8K Z;  4UN7 G;  1LWS A;  1G9Z A;  4YIS A;  3MIS A;  5E5O A;  2DCH X;  4Z1X A;  5A0M A;  5AK9 A;  2O7M A;  4UN8 G;  2VBO B;  1U0C A;  4UT0 A;  4UN9 G;  3UVF A;  3HYI A;  3QQY A;  5E63 A;  1M5X A;  3OOL A;  5A0W A;  4LQ0 A;  3R7P A;  1VDE A;  2VBJ A;  1LWT A;  2VBN A;  3OOR A;  5A74 A;  5A0M B;  2VS7 A;  2I3Q A;  2EX5 A;  1BP7 A;  4LOX A;  4AQX A;  3MX9 A;  2AB5 A;  2FLD A;  4D6N A;  4D6O A;  2VBJ B;  3EH8 A;  2VBN B;  1MOW A;  1AF5 A;  3C0X A;  1DFA A;  5A78 A;  5A72 A;  3MXA A;  4Z1Z A;  5A77 A;  1N3E A;  2CW8 A;  4AAB A;  4UNB A;  3MXB A;  2I3P A;  4YHX A;  5E5S A;  4AQU A;  4UN7 A;  1UM2 A;  2VS8 A;  2XE0 A;  3C0W A;  4AAG A;  1JVA A;  3MIP A;  4YIT A;  3FD2 A;  4AAF A;  1DQ3 A; 
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