4EV1A

Anabaena tic22 (protein transport)
Total Genus 61
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
61
sequence length
226
structure length
226
Chain Sequence
MLSEQQIKEKLDSVPIYLVTNEKGLPLSRPLPNAPNGQKAGGSITGAYMSRQEAQAFINELRNAKNKDPKMQEIVKSLQVTAVPLGVIYQQLQQTKKDPNRLLFAFKPVDQEIKGAMDLLRQSGQQVNQFKSVPMFAVRFAPDQGYVPIKVGTGNEQVVPLFLSKQDAQGLLGQVKPKHPKADIQVLDIDGVLQTLQDKNDTWLNQVVLVPSPESREYIRTLPKPP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Functional conservation of Tic22 in cyanobacterial outer membrane protein assembly and chloroplast translocation.
rcsb
molecule tags Chaperone
source organism Anabaena sp.
molecule keywords Anabena Tic22
total genus 61
structure length 226
sequence length 226
ec nomenclature
pdb deposition date 2012-04-25
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.100 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 4ev1A00
4E6ZA 4EV1A
chains in the Genus database with same CATH superfamily
2INBA 2WJ0A 1R11A 2CV8A 4G6VA 4LQEA 3AJVA 2VLDA 1YNMA 3IEYB 2WIZA 3IEYA 1A79A 4QBLA 4TKKA 2WIWA 2FKHB 2EO0A 4QBOA 2OKFA 4QBNA 1RZNA 1T0FA 2FL3A 2BH2A 2CZRA 3IF0X 3P1YA 2FLCA 3DNXA 1IPIA 2VS1A 4ZQUA 4DAPA 2WCZA 1Y88A 2FCOA 2Z0RA 4G6UA 2OSTA 4EV1A 1OB8A 2GW6A 1F1ZA 3P1ZB 1R0VA 5FDKA 1RLVA 2WCWA 4DA2A 2DBSA 3P1ZA 2JJQA 1UWVA 2GJWA 2ZYZB 3BT7A 1OB9A 1Y1OA 1GEFA 2IXSA 4E6ZA 1HH1A 1ZP7A 4DAVA 2ZYZA 4TKDA 2W8MA 2FKCA 1XMXA 3AJVB 3FOVA
chains in the Genus database with same CATH topology
2INBA 2WJ0A 1R11A 2CV8A 4G6VA 4LQEA 3AJVA 2VLDA 1YNMA 3IEYB 2WIZA 3IEYA 1A79A 4QBLA 4TKKA 2WIWA 2FKHB 2EO0A 4QBOA 2OKFA 4QBNA 1RZNA 1T0FA 2FL3A 2BH2A 2CZRA 3IF0X 3P1YA 2FLCA 3DNXA 1IPIA 2VS1A 4ZQUA 4DAPA 2WCZA 1Y88A 2FCOA 2Z0RA 4G6UA 2OSTA 4EV1A 1OB8A 2GW6A 1F1ZA 3P1ZB 1R0VA 5FDKA 1RLVA 2WCWA 4DA2A 2DBSA 3P1ZA 2JJQA 1UWVA 2GJWA 2ZYZB 3BT7A 1OB9A 1Y1OA 1GEFA 2IXSA 4E6ZA 1HH1A 1ZP7A 4DAVA 2ZYZA 4TKDA 2W8MA 2FKCA 1XMXA 3AJVB 3FOVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E6Z A;  4EV1 A; 
#chains in the Genus database with same CATH topology
 2INB A;  2WJ0 A;  1R11 A;  2CV8 A;  4G6V A;  4LQE A;  3AJV A;  2VLD A;  1YNM A;  3IEY B;  2WIZ A;  3IEY A;  1A79 A;  4QBL A;  4TKK A;  2WIW A;  2FKH B;  2EO0 A;  4QBO A;  2OKF A;  4QBN A;  1RZN A;  1T0F A;  2FL3 A;  2BH2 A;  2CZR A;  3IF0 X;  3P1Y A;  2FLC A;  3DNX A;  1IPI A;  2VS1 A;  4ZQU A;  4DAP A;  2WCZ A;  1Y88 A;  2FCO A;  2Z0R A;  4G6U A;  2OST A;  4EV1 A;  1OB8 A;  2GW6 A;  1F1Z A;  3P1Z B;  1R0V A;  5FDK A;  1RLV A;  2WCW A;  4DA2 A;  2DBS A;  3P1Z A;  2JJQ A;  1UWV A;  2GJW A;  2ZYZ B;  3BT7 A;  1OB9 A;  1Y1O A;  1GEF A;  2IXS A;  4E6Z A;  1HH1 A;  1ZP7 A;  4DAV A;  2ZYZ A;  4TKD A;  2W8M A;  2FKC A;  1XMX A;  3AJV B;  3FOV A; 
#chains in the Genus database with same CATH homology
 2INB A;  2WJ0 A;  1R11 A;  2CV8 A;  4G6V A;  4LQE A;  3AJV A;  2VLD A;  1YNM A;  3IEY B;  2WIZ A;  3IEY A;  1A79 A;  4QBL A;  4TKK A;  2WIW A;  2FKH B;  2EO0 A;  4QBO A;  2OKF A;  4QBN A;  1RZN A;  1T0F A;  2FL3 A;  2BH2 A;  2CZR A;  3IF0 X;  3P1Y A;  2FLC A;  3DNX A;  1IPI A;  2VS1 A;  4ZQU A;  4DAP A;  2WCZ A;  1Y88 A;  2FCO A;  2Z0R A;  4G6U A;  2OST A;  4EV1 A;  1OB8 A;  2GW6 A;  1F1Z A;  3P1Z B;  1R0V A;  5FDK A;  1RLV A;  2WCW A;  4DA2 A;  2DBS A;  3P1Z A;  2JJQ A;  1UWV A;  2GJW A;  2ZYZ B;  3BT7 A;  1OB9 A;  1Y1O A;  1GEF A;  2IXS A;  4E6Z A;  1HH1 A;  1ZP7 A;  4DAV A;  2ZYZ A;  4TKD A;  2W8M A;  2FKC A;  1XMX A;  3AJV B;  3FOV A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...