4ILV | Genus

Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	38
sequence length	155
structure length	155
Chain Sequence	DPTPDQMEGPYFKPDSPPRTSLVTSSTPGVPLTVSGYVFGRACKPLTGVLLDFWQADTGGAYDMTGFAFRGHQFTGADGSFTLRTIVPGLYPGRTRHIHVKAQAPGRPVLTTQLYFPGEPRNTTDALFDPALLMNVRSAGPGREGTFDFVLDVAQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 155 atoms

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155 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Fusion of Dioxygenase and Lignin-binding Domains in a Novel Secreted Enzyme from Cellulolytic Streptomyces sp. SirexAA-E. pubmed doi rcsb
molecule keywords	Intradiol ring-cleavage dioxygenase
molecule tags	Oxidoreductase
source organism	Streptomyces sp. sirexaa-e
total genus	38
structure length	155
sequence length	155
chains with identical sequence	B
ec nomenclature
pdb deposition date	2013-01-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00775	Dioxygenase_C	Dioxygenase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.130.10	Mainly Beta	Sandwich	Protocatechuate 3,4-Dioxygenase, subunit A	Aromatic compound dioxygenase	4ilvA00

3PCIM 1S9AA 3PCCM 3MV4A 2BUQB 2BUTB 1DLQA 3LKTA 4WHOD 3I51A 3PCHA 3PCAA 3PCFM 1EOCB 3PCLA 4WHPD 2BUYB 3HHXA 3LMXM 3PCKA 2PCDA 2BUWA 3PCDA 4WHOA 1YKMB 3PCGA 3O6RA 3MV6M 1EOAB 4WHPA 3N9TA 1YKNB 3TH1A 1YKLA 3LXVA 3MI1A 3MI5A 3O32A 1EO9B 2BUZB 3HJQA 1YKOA 3MV4M 1YKPA 3LKTM 3HJSA 3PCEM 3HJ8A 2XSRA 2BOYA 2BURA 3PCHM 3PCAM 3PCLM 2BV0B 3PCKM 2PCDM 3T63A 3PCGM 4WHSD 2BUTA 2BUMA 2BUQA 3PCMA 4WHRB 2BUUB 4ILTA 1YKKB 1DMHA 3LXVM 3MI1M 1EOCA 3MI5M 4WHSA 2BUYA 3HHYA 1YKMA 3PCJA 1EOAA 1EOBB 3T67A 1YKNA 3MFLA 1EO2B 3PCIA 2BUXA 3I4VA 3PCBA 1EO9A 2BUZA 4WHQB 3T63M 2BUVB 3PCMM 3PCDM 2BV0A 3I4YA 3PCJM 4WHRA 2BUUA 3O6JA 1YKKA 3T67M 3MFLM 4ILVA 2XSVA 2XSUA 3PCBM 3PCNA 2BUMB 3PCEA 2BUWB 4WHOB 3PCCA 1EOBA 1TMXA 4WHPB 4WHSB 4WHRF 2AZQA 1EO2A 3PCFA 1YKLB 5TD3A 4WHQA 1DLTA 2BUVA 3LMXA 1YKOB 1YKPB 3MV6A 1DLMA 2BUXB 2BURB 3HGIA 3PCNM 3O5UA 3HKPA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3PCI M;  1S9A A;  3PCC M;  3MV4 A;  2BUQ B;  2BUT B;  1DLQ A;  3LKT A;  4WHO D;  3I51 A;  3PCH A;  3PCA A;  3PCF M;  1EOC B;  3PCL A;  4WHP D;  2BUY B;  3HHX A;  3LMX M;  3PCK A;  2PCD A;  2BUW A;  3PCD A;  4WHO A;  1YKM B;  3PCG A;  3O6R A;  3MV6 M;  1EOA B;  4WHP A;  3N9T A;  1YKN B;  3TH1 A;  1YKL A;  3LXV A;  3MI1 A;  3MI5 A;  3O32 A;  1EO9 B;  2BUZ B;  3HJQ A;  1YKO A;  3MV4 M;  1YKP A;  3LKT M;  3HJS A;  3PCE M;  3HJ8 A;  2XSR A;  2BOY A;  2BUR A;  3PCH M;  3PCA M;  3PCL M;  2BV0 B;  3PCK M;  2PCD M;  3T63 A;  3PCG M;  4WHS D;  2BUT A;  2BUM A;  2BUQ A;  3PCM A;  4WHR B;  2BUU B;  4ILT A;  1YKK B;  1DMH A;  3LXV M;  3MI1 M;  1EOC A;  3MI5 M;  4WHS A;  2BUY A;  3HHY A;  1YKM A;  3PCJ A;  1EOA A;  1EOB B;  3T67 A;  1YKN A;  3MFL A;  1EO2 B;  3PCI A;  2BUX A;  3I4V A;  3PCB A;  1EO9 A;  2BUZ A;  4WHQ B;  3T63 M;  2BUV B;  3PCM M;  3PCD M;  2BV0 A;  3I4Y A;  3PCJ M;  4WHR A;  2BUU A;  3O6J A;  1YKK A;  3T67 M;  3MFL M;  4ILV A;  2XSV A;  2XSU A;  3PCB M;  3PCN A;  2BUM B;  3PCE A;  2BUW B;  4WHO B;  3PCC A;  1EOB A;  1TMX A;  4WHP B;  4WHS B;  4WHR F;  2AZQ A;  1EO2 A;  3PCF A;  1YKL B;  5TD3 A;  4WHQ A;  1DLT A;  2BUV A;  3LMX A;  1YKO B;  1YKP B;  3MV6 A;  1DLM A;  2BUX B;  2BUR B;  3HGI A;  3PCN M;  3O5U A;  3HKP A; 
#chains in the Genus database with same CATH topology
 3PCI M;  1S9A A;  3PCC M;  3MV4 A;  2BUQ B;  2BUT B;  1DLQ A;  3LKT A;  4WHO D;  3I51 A;  3PCH A;  3PCA A;  3PCF M;  1EOC B;  3PCL A;  4WHP D;  2BUY B;  3HHX A;  3LMX M;  3PCK A;  2PCD A;  2BUW A;  3PCD A;  4WHO A;  1YKM B;  3PCG A;  3O6R A;  3MV6 M;  1EOA B;  4WHP A;  3N9T A;  1YKN B;  3TH1 A;  1YKL A;  3LXV A;  3MI1 A;  3MI5 A;  3O32 A;  1EO9 B;  2BUZ B;  3HJQ A;  1YKO A;  3MV4 M;  1YKP A;  3LKT M;  3HJS A;  3PCE M;  3HJ8 A;  2XSR A;  2BOY A;  2BUR A;  3PCH M;  3PCA M;  3PCL M;  2BV0 B;  3PCK M;  2PCD M;  3T63 A;  3PCG M;  4WHS D;  2BUT A;  2BUM A;  2BUQ A;  3PCM A;  4WHR B;  2BUU B;  4ILT A;  1YKK B;  1DMH A;  3LXV M;  3MI1 M;  1EOC A;  3MI5 M;  4WHS A;  2BUY A;  3HHY A;  1YKM A;  3PCJ A;  1EOA A;  1EOB B;  3T67 A;  1YKN A;  3MFL A;  1EO2 B;  3PCI A;  2BUX A;  3I4V A;  3PCB A;  1EO9 A;  2BUZ A;  4WHQ B;  3T63 M;  2BUV B;  3PCM M;  3PCD M;  2BV0 A;  3I4Y A;  3PCJ M;  4WHR A;  2BUU A;  3O6J A;  1YKK A;  3T67 M;  3MFL M;  4ILV A;  2XSV A;  2XSU A;  3PCB M;  3PCN A;  2BUM B;  3PCE A;  2BUW B;  4WHO B;  3PCC A;  1EOB A;  1TMX A;  4WHP B;  4WHS B;  4WHR F;  2AZQ A;  1EO2 A;  3PCF A;  1YKL B;  5TD3 A;  4WHQ A;  1DLT A;  2BUV A;  3LMX A;  1YKO B;  1YKP B;  3MV6 A;  1DLM A;  2BUX B;  2BUR B;  3HGI A;  3PCN M;  3O5U A;  3HKP A; 
#chains in the Genus database with same CATH homology
 3PCI M;  1S9A A;  3PCC M;  3MV4 A;  2BUQ B;  2BUT B;  1DLQ A;  3LKT A;  4WHO D;  3I51 A;  3PCH A;  3PCA A;  3PCF M;  1EOC B;  3PCL A;  4WHP D;  2BUY B;  3HHX A;  3LMX M;  3PCK A;  2PCD A;  2BUW A;  3PCD A;  4WHO A;  1YKM B;  3PCG A;  3O6R A;  3MV6 M;  1EOA B;  4WHP A;  3N9T A;  1YKN B;  3TH1 A;  1YKL A;  3LXV A;  3MI1 A;  3MI5 A;  3O32 A;  1EO9 B;  2BUZ B;  3HJQ A;  1YKO A;  3MV4 M;  1YKP A;  3LKT M;  3HJS A;  3PCE M;  3HJ8 A;  2XSR A;  2BOY A;  2BUR A;  3PCH M;  3PCA M;  3PCL M;  2BV0 B;  3PCK M;  2PCD M;  3T63 A;  3PCG M;  4WHS D;  2BUT A;  2BUM A;  2BUQ A;  3PCM A;  4WHR B;  2BUU B;  4ILT A;  1YKK B;  1DMH A;  3LXV M;  3MI1 M;  1EOC A;  3MI5 M;  4WHS A;  2BUY A;  3HHY A;  1YKM A;  3PCJ A;  1EOA A;  1EOB B;  3T67 A;  1YKN A;  3MFL A;  1EO2 B;  3PCI A;  2BUX A;  3I4V A;  3PCB A;  1EO9 A;  2BUZ A;  4WHQ B;  3T63 M;  2BUV B;  3PCM M;  3PCD M;  2BV0 A;  3I4Y A;  3PCJ M;  4WHR A;  2BUU A;  3O6J A;  1YKK A;  3T67 M;  3MFL M;  4ILV A;  2XSV A;  2XSU A;  3PCB M;  3PCN A;  2BUM B;  3PCE A;  2BUW B;  4WHO B;  3PCC A;  1EOB A;  1TMX A;  4WHP B;  4WHS B;  4WHR F;  2AZQ A;  1EO2 A;  3PCF A;  1YKL B;  5TD3 A;  4WHQ A;  1DLT A;  2BUV A;  3LMX A;  1YKO B;  1YKP B;  3MV6 A;  1DLM A;  2BUX B;  2BUR B;  3HGI A;  3PCN M;  3O5U A;  3HKP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4ILVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations