4ILV | Genus

Total Genus 38

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	38
sequence length	155
structure length	155
Chain Sequence	DPTPDQMEGPYFKPDSPPRTSLVTSSTPGVPLTVSGYVFGRACKPLTGVLLDFWQADTGGAYDMTGFAFRGHQFTGADGSFTLRTIVPGLYPGRTRHIHVKAQAPGRPVLTTQLYFPGEPRNTTDALFDPALLMNVRSAGPGREGTFDFVLDVAQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 155 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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155 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Fusion of Dioxygenase and Lignin-binding Domains in a Novel Secreted Enzyme from Cellulolytic Streptomyces sp. SirexAA-E. pubmed doi rcsb
molecule keywords	Intradiol ring-cleavage dioxygenase
molecule tags	Oxidoreductase
source organism	Streptomyces sp. sirexaa-e
total genus	38
structure length	155
sequence length	155
chains with identical sequence	B
ec nomenclature
pdb deposition date	2013-01-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00775	Dioxygenase_C	Dioxygenase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.130.10	Mainly Beta	Sandwich	Protocatechuate 3,4-Dioxygenase, subunit A	Aromatic compound dioxygenase	4ilvA00

4WHOD 3PCJA 3LMXM 1EO2A 3HHYA 3LXVM 4WHOA 2BUMA 3PCCM 2PCDA 3HJ8A 3PCDA 2BUUB 2BUQB 2BUWB 1YKMA 2BUTA 1DLMA 2BUYA 3PCHA 3PCNA 1EO2B 1YKKB 3O6JA 1YKLA 3T63A 4WHOB 3TH1A 2BUWA 1YKMB 4ILTA 3MI5A 3T67M 3PCHM 2BUTB 3LKTM 2XSVA 1YKNA 3PCNM 3PCFM 1YKKA 2BUYB 2BUVA 1YKPA 1S9AA 3PCBA 3PCKA 5TD3A 2BV0A 3PCAA 3T63M 1YKLB 3PCIM 1EO9A 4WHPB 3MFLA 3PCJM 4ILVA 3HKPA 3MI1A 4WHPD 3MV6A 1YKNB 3PCGA 3PCKM 2BUVB 1YKPB 3PCEA 4WHRA 4WHPA 2BV0B 2PCDM 3PCDM 1EOCA 3PCLA 4WHSD 1EO9B 3PCMA 3O5UA 3MI1M 1EOAA 2XSUA 1YKOA 4WHSA 3PCGM 3HJSA 3PCEM 2BUZB 1TMXA 2BOYA 3O32A 4WHRB 3PCLM 1DLQA 3MV4A 3N9TA 1EOCB 3LMXA 3I51A 3MI5M 3LXVA 2BURA 1EOAB 1YKOB 4WHSB 2BUZA 3PCBM 3O6RA 3PCAM 1DMHA 3MFLM 1EOBA 4WHQA 2BUXA 4WHRF 3MV6M 1DLTA 2BURB 2AZQA 3I4VA 3T67A 3PCMM 3LKTA 3PCFA 1EOBB 2XSRA 4WHQB 3I4YA 2BUXB 3HJQA 2BUUA 2BUQA 3HGIA 2BUMB 3PCCA 3PCIA 3HHXA 3MV4M
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4WHO D;  3PCJ A;  3LMX M;  1EO2 A;  3HHY A;  3LXV M;  4WHO A;  2BUM A;  3PCC M;  2PCD A;  3HJ8 A;  3PCD A;  2BUU B;  2BUQ B;  2BUW B;  1YKM A;  2BUT A;  1DLM A;  2BUY A;  3PCH A;  3PCN A;  1EO2 B;  1YKK B;  3O6J A;  1YKL A;  3T63 A;  4WHO B;  3TH1 A;  2BUW A;  1YKM B;  4ILT A;  3MI5 A;  3T67 M;  3PCH M;  2BUT B;  3LKT M;  2XSV A;  1YKN A;  3PCN M;  3PCF M;  1YKK A;  2BUY B;  2BUV A;  1YKP A;  1S9A A;  3PCB A;  3PCK A;  5TD3 A;  2BV0 A;  3PCA A;  3T63 M;  1YKL B;  3PCI M;  1EO9 A;  4WHP B;  3MFL A;  3PCJ M;  4ILV A;  3HKP A;  3MI1 A;  4WHP D;  3MV6 A;  1YKN B;  3PCG A;  3PCK M;  2BUV B;  1YKP B;  3PCE A;  4WHR A;  4WHP A;  2BV0 B;  2PCD M;  3PCD M;  1EOC A;  3PCL A;  4WHS D;  1EO9 B;  3PCM A;  3O5U A;  3MI1 M;  1EOA A;  2XSU A;  1YKO A;  4WHS A;  3PCG M;  3HJS A;  3PCE M;  2BUZ B;  1TMX A;  2BOY A;  3O32 A;  4WHR B;  3PCL M;  1DLQ A;  3MV4 A;  3N9T A;  1EOC B;  3LMX A;  3I51 A;  3MI5 M;  3LXV A;  2BUR A;  1EOA B;  1YKO B;  4WHS B;  2BUZ A;  3PCB M;  3O6R A;  3PCA M;  1DMH A;  3MFL M;  1EOB A;  4WHQ A;  2BUX A;  4WHR F;  3MV6 M;  1DLT A;  2BUR B;  2AZQ A;  3I4V A;  3T67 A;  3PCM M;  3LKT A;  3PCF A;  1EOB B;  2XSR A;  4WHQ B;  3I4Y A;  2BUX B;  3HJQ A;  2BUU A;  2BUQ A;  3HGI A;  2BUM B;  3PCC A;  3PCI A;  3HHX A;  3MV4 M; 
#chains in the Genus database with same CATH topology
 4WHO D;  3PCJ A;  3LMX M;  1EO2 A;  3HHY A;  3LXV M;  4WHO A;  2BUM A;  3PCC M;  2PCD A;  3HJ8 A;  3PCD A;  2BUU B;  2BUQ B;  2BUW B;  1YKM A;  2BUT A;  1DLM A;  2BUY A;  3PCH A;  3PCN A;  1EO2 B;  1YKK B;  3O6J A;  1YKL A;  3T63 A;  4WHO B;  3TH1 A;  2BUW A;  1YKM B;  4ILT A;  3MI5 A;  3T67 M;  3PCH M;  2BUT B;  3LKT M;  2XSV A;  1YKN A;  3PCN M;  3PCF M;  1YKK A;  2BUY B;  2BUV A;  1YKP A;  1S9A A;  3PCB A;  3PCK A;  5TD3 A;  2BV0 A;  3PCA A;  3T63 M;  1YKL B;  3PCI M;  1EO9 A;  4WHP B;  3MFL A;  3PCJ M;  4ILV A;  3HKP A;  3MI1 A;  4WHP D;  3MV6 A;  1YKN B;  3PCG A;  3PCK M;  2BUV B;  1YKP B;  3PCE A;  4WHR A;  4WHP A;  2BV0 B;  2PCD M;  3PCD M;  1EOC A;  3PCL A;  4WHS D;  1EO9 B;  3PCM A;  3O5U A;  3MI1 M;  1EOA A;  2XSU A;  1YKO A;  4WHS A;  3PCG M;  3HJS A;  3PCE M;  2BUZ B;  1TMX A;  2BOY A;  3O32 A;  4WHR B;  3PCL M;  1DLQ A;  3MV4 A;  3N9T A;  1EOC B;  3LMX A;  3I51 A;  3MI5 M;  3LXV A;  2BUR A;  1EOA B;  1YKO B;  4WHS B;  2BUZ A;  3PCB M;  3O6R A;  3PCA M;  1DMH A;  3MFL M;  1EOB A;  4WHQ A;  2BUX A;  4WHR F;  3MV6 M;  1DLT A;  2BUR B;  2AZQ A;  3I4V A;  3T67 A;  3PCM M;  3LKT A;  3PCF A;  1EOB B;  2XSR A;  4WHQ B;  3I4Y A;  2BUX B;  3HJQ A;  2BUU A;  2BUQ A;  3HGI A;  2BUM B;  3PCC A;  3PCI A;  3HHX A;  3MV4 M; 
#chains in the Genus database with same CATH homology
 4WHO D;  3PCJ A;  3LMX M;  1EO2 A;  3HHY A;  3LXV M;  4WHO A;  2BUM A;  3PCC M;  2PCD A;  3HJ8 A;  3PCD A;  2BUU B;  2BUQ B;  2BUW B;  1YKM A;  2BUT A;  1DLM A;  2BUY A;  3PCH A;  3PCN A;  1EO2 B;  1YKK B;  3O6J A;  1YKL A;  3T63 A;  4WHO B;  3TH1 A;  2BUW A;  1YKM B;  4ILT A;  3MI5 A;  3T67 M;  3PCH M;  2BUT B;  3LKT M;  2XSV A;  1YKN A;  3PCN M;  3PCF M;  1YKK A;  2BUY B;  2BUV A;  1YKP A;  1S9A A;  3PCB A;  3PCK A;  5TD3 A;  2BV0 A;  3PCA A;  3T63 M;  1YKL B;  3PCI M;  1EO9 A;  4WHP B;  3MFL A;  3PCJ M;  4ILV A;  3HKP A;  3MI1 A;  4WHP D;  3MV6 A;  1YKN B;  3PCG A;  3PCK M;  2BUV B;  1YKP B;  3PCE A;  4WHR A;  4WHP A;  2BV0 B;  2PCD M;  3PCD M;  1EOC A;  3PCL A;  4WHS D;  1EO9 B;  3PCM A;  3O5U A;  3MI1 M;  1EOA A;  2XSU A;  1YKO A;  4WHS A;  3PCG M;  3HJS A;  3PCE M;  2BUZ B;  1TMX A;  2BOY A;  3O32 A;  4WHR B;  3PCL M;  1DLQ A;  3MV4 A;  3N9T A;  1EOC B;  3LMX A;  3I51 A;  3MI5 M;  3LXV A;  2BUR A;  1EOA B;  1YKO B;  4WHS B;  2BUZ A;  3PCB M;  3O6R A;  3PCA M;  1DMH A;  3MFL M;  1EOB A;  4WHQ A;  2BUX A;  4WHR F;  3MV6 M;  1DLT A;  2BUR B;  2AZQ A;  3I4V A;  3T67 A;  3PCM M;  3LKT A;  3PCF A;  1EOB B;  2XSR A;  4WHQ B;  3I4Y A;  2BUX B;  3HJQ A;  2BUU A;  2BUQ A;  3HGI A;  2BUM B;  3PCC A;  3PCI A;  3HHX A;  3MV4 M;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4ILVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations