4ILVA

Structure of the dioxygenase domain of sacte_2871, a novel dioxygenase carbohydrate-binding protein fusion from the cellulolytic bacterium streptomyces sp. sirexaa-e
Total Genus 38
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
155
structure length
155
Chain Sequence
DPTPDQMEGPYFKPDSPPRTSLVTSSTPGVPLTVSGYVFGRACKPLTGVLLDFWQADTGGAYDMTGFAFRGHQFTGADGSFTLRTIVPGLYPGRTRHIHVKAQAPGRPVLTTQLYFPGEPRNTTDALFDPALLMNVRSAGPGREGTFDFVLDVAQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (85-88)S2 (120-121)TIV1 (89-92)EMPTYTIV2 (122-125)TI3 (116-119)S1 (107-116)TI4 (133-136)S3 (125-131)S4 (146-151)TIV3 (139-142)TI5 (152-155)TI2 (100-103)TII1 (143-146)Updating...
connected with : NaN
publication title Fusion of Dioxygenase and Lignin-binding Domains in a Novel Secreted Enzyme from Cellulolytic Streptomyces sp. SirexAA-E.
pubmed doi rcsb
molecule keywords Intradiol ring-cleavage dioxygenase
molecule tags Oxidoreductase
source organism Streptomyces sp. sirexaa-e
total genus 38
structure length 155
sequence length 155
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-01-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 4ilvA00
3PCIM 1S9AA 3PCCM 3MV4A 2BUQB 2BUTB 1DLQA 3LKTA 4WHOD 3I51A 3PCHA 3PCAA 3PCFM 1EOCB 3PCLA 4WHPD 2BUYB 3HHXA 3LMXM 3PCKA 2PCDA 2BUWA 3PCDA 4WHOA 1YKMB 3PCGA 3O6RA 3MV6M 1EOAB 4WHPA 3N9TA 1YKNB 3TH1A 1YKLA 3LXVA 3MI1A 3MI5A 3O32A 1EO9B 2BUZB 3HJQA 1YKOA 3MV4M 1YKPA 3LKTM 3HJSA 3PCEM 3HJ8A 2XSRA 2BOYA 2BURA 3PCHM 3PCAM 3PCLM 2BV0B 3PCKM 2PCDM 3T63A 3PCGM 4WHSD 2BUTA 2BUMA 2BUQA 3PCMA 4WHRB 2BUUB 4ILTA 1YKKB 1DMHA 3LXVM 3MI1M 1EOCA 3MI5M 4WHSA 2BUYA 3HHYA 1YKMA 3PCJA 1EOAA 1EOBB 3T67A 1YKNA 3MFLA 1EO2B 3PCIA 2BUXA 3I4VA 3PCBA 1EO9A 2BUZA 4WHQB 3T63M 2BUVB 3PCMM 3PCDM 2BV0A 3I4YA 3PCJM 4WHRA 2BUUA 3O6JA 1YKKA 3T67M 3MFLM 4ILVA 2XSVA 2XSUA 3PCBM 3PCNA 2BUMB 3PCEA 2BUWB 4WHOB 3PCCA 1EOBA 1TMXA 4WHPB 4WHSB 4WHRF 2AZQA 1EO2A 3PCFA 1YKLB 5TD3A 4WHQA 1DLTA 2BUVA 3LMXA 1YKOB 1YKPB 3MV6A 1DLMA 2BUXB 2BURB 3HGIA 3PCNM 3O5UA 3HKPA
chains in the Genus database with same CATH superfamily
3PCIM 1S9AA 3PCCM 3MV4A 2BUQB 2BUTB 1DLQA 3LKTA 4WHOD 3I51A 3PCHA 3PCAA 3PCFM 1EOCB 3PCLA 4WHPD 2BUYB 3HHXA 3LMXM 3PCKA 2PCDA 2BUWA 3PCDA 4WHOA 1YKMB 3PCGA 3O6RA 3MV6M 1EOAB 4WHPA 3N9TA 1YKNB 3TH1A 1YKLA 3LXVA 3MI1A 3MI5A 3O32A 1EO9B 2BUZB 3HJQA 1YKOA 3MV4M 1YKPA 3LKTM 3HJSA 3PCEM 3HJ8A 2XSRA 2BOYA 2BURA 3PCHM 3PCAM 3PCLM 2BV0B 3PCKM 2PCDM 3T63A 3PCGM 4WHSD 2BUTA 2BUMA 2BUQA 3PCMA 4WHRB 2BUUB 4ILTA 1YKKB 1DMHA 3LXVM 3MI1M 1EOCA 3MI5M 4WHSA 2BUYA 3HHYA 1YKMA 3PCJA 1EOAA 1EOBB 3T67A 1YKNA 3MFLA 1EO2B 3PCIA 2BUXA 3I4VA 3PCBA 1EO9A 2BUZA 4WHQB 3T63M 2BUVB 3PCMM 3PCDM 2BV0A 3I4YA 3PCJM 4WHRA 2BUUA 3O6JA 1YKKA 3T67M 3MFLM 4ILVA 2XSVA 2XSUA 3PCBM 3PCNA 2BUMB 3PCEA 2BUWB 4WHOB 3PCCA 1EOBA 1TMXA 4WHPB 4WHSB 4WHRF 2AZQA 1EO2A 3PCFA 1YKLB 5TD3A 4WHQA 1DLTA 2BUVA 3LMXA 1YKOB 1YKPB 3MV6A 1DLMA 2BUXB 2BURB 3HGIA 3PCNM 3O5UA 3HKPA
chains in the Genus database with same CATH topology
3PCIM 1S9AA 3PCCM 3MV4A 2BUQB 2BUTB 1DLQA 3LKTA 4WHOD 3I51A 3PCHA 3PCAA 3PCFM 1EOCB 3PCLA 4WHPD 2BUYB 3HHXA 3LMXM 3PCKA 2PCDA 2BUWA 3PCDA 4WHOA 1YKMB 3PCGA 3O6RA 3MV6M 1EOAB 4WHPA 3N9TA 1YKNB 3TH1A 1YKLA 3LXVA 3MI1A 3MI5A 3O32A 1EO9B 2BUZB 3HJQA 1YKOA 3MV4M 1YKPA 3LKTM 3HJSA 3PCEM 3HJ8A 2XSRA 2BOYA 2BURA 3PCHM 3PCAM 3PCLM 2BV0B 3PCKM 2PCDM 3T63A 3PCGM 4WHSD 2BUTA 2BUMA 2BUQA 3PCMA 4WHRB 2BUUB 4ILTA 1YKKB 1DMHA 3LXVM 3MI1M 1EOCA 3MI5M 4WHSA 2BUYA 3HHYA 1YKMA 3PCJA 1EOAA 1EOBB 3T67A 1YKNA 3MFLA 1EO2B 3PCIA 2BUXA 3I4VA 3PCBA 1EO9A 2BUZA 4WHQB 3T63M 2BUVB 3PCMM 3PCDM 2BV0A 3I4YA 3PCJM 4WHRA 2BUUA 3O6JA 1YKKA 3T67M 3MFLM 4ILVA 2XSVA 2XSUA 3PCBM 3PCNA 2BUMB 3PCEA 2BUWB 4WHOB 3PCCA 1EOBA 1TMXA 4WHPB 4WHSB 4WHRF 2AZQA 1EO2A 3PCFA 1YKLB 5TD3A 4WHQA 1DLTA 2BUVA 3LMXA 1YKOB 1YKPB 3MV6A 1DLMA 2BUXB 2BURB 3HGIA 3PCNM 3O5UA 3HKPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PCI M;  1S9A A;  3PCC M;  3MV4 A;  2BUQ B;  2BUT B;  1DLQ A;  3LKT A;  4WHO D;  3I51 A;  3PCH A;  3PCA A;  3PCF M;  1EOC B;  3PCL A;  4WHP D;  2BUY B;  3HHX A;  3LMX M;  3PCK A;  2PCD A;  2BUW A;  3PCD A;  4WHO A;  1YKM B;  3PCG A;  3O6R A;  3MV6 M;  1EOA B;  4WHP A;  3N9T A;  1YKN B;  3TH1 A;  1YKL A;  3LXV A;  3MI1 A;  3MI5 A;  3O32 A;  1EO9 B;  2BUZ B;  3HJQ A;  1YKO A;  3MV4 M;  1YKP A;  3LKT M;  3HJS A;  3PCE M;  3HJ8 A;  2XSR A;  2BOY A;  2BUR A;  3PCH M;  3PCA M;  3PCL M;  2BV0 B;  3PCK M;  2PCD M;  3T63 A;  3PCG M;  4WHS D;  2BUT A;  2BUM A;  2BUQ A;  3PCM A;  4WHR B;  2BUU B;  4ILT A;  1YKK B;  1DMH A;  3LXV M;  3MI1 M;  1EOC A;  3MI5 M;  4WHS A;  2BUY A;  3HHY A;  1YKM A;  3PCJ A;  1EOA A;  1EOB B;  3T67 A;  1YKN A;  3MFL A;  1EO2 B;  3PCI A;  2BUX A;  3I4V A;  3PCB A;  1EO9 A;  2BUZ A;  4WHQ B;  3T63 M;  2BUV B;  3PCM M;  3PCD M;  2BV0 A;  3I4Y A;  3PCJ M;  4WHR A;  2BUU A;  3O6J A;  1YKK A;  3T67 M;  3MFL M;  4ILV A;  2XSV A;  2XSU A;  3PCB M;  3PCN A;  2BUM B;  3PCE A;  2BUW B;  4WHO B;  3PCC A;  1EOB A;  1TMX A;  4WHP B;  4WHS B;  4WHR F;  2AZQ A;  1EO2 A;  3PCF A;  1YKL B;  5TD3 A;  4WHQ A;  1DLT A;  2BUV A;  3LMX A;  1YKO B;  1YKP B;  3MV6 A;  1DLM A;  2BUX B;  2BUR B;  3HGI A;  3PCN M;  3O5U A;  3HKP A; 
#chains in the Genus database with same CATH topology
 3PCI M;  1S9A A;  3PCC M;  3MV4 A;  2BUQ B;  2BUT B;  1DLQ A;  3LKT A;  4WHO D;  3I51 A;  3PCH A;  3PCA A;  3PCF M;  1EOC B;  3PCL A;  4WHP D;  2BUY B;  3HHX A;  3LMX M;  3PCK A;  2PCD A;  2BUW A;  3PCD A;  4WHO A;  1YKM B;  3PCG A;  3O6R A;  3MV6 M;  1EOA B;  4WHP A;  3N9T A;  1YKN B;  3TH1 A;  1YKL A;  3LXV A;  3MI1 A;  3MI5 A;  3O32 A;  1EO9 B;  2BUZ B;  3HJQ A;  1YKO A;  3MV4 M;  1YKP A;  3LKT M;  3HJS A;  3PCE M;  3HJ8 A;  2XSR A;  2BOY A;  2BUR A;  3PCH M;  3PCA M;  3PCL M;  2BV0 B;  3PCK M;  2PCD M;  3T63 A;  3PCG M;  4WHS D;  2BUT A;  2BUM A;  2BUQ A;  3PCM A;  4WHR B;  2BUU B;  4ILT A;  1YKK B;  1DMH A;  3LXV M;  3MI1 M;  1EOC A;  3MI5 M;  4WHS A;  2BUY A;  3HHY A;  1YKM A;  3PCJ A;  1EOA A;  1EOB B;  3T67 A;  1YKN A;  3MFL A;  1EO2 B;  3PCI A;  2BUX A;  3I4V A;  3PCB A;  1EO9 A;  2BUZ A;  4WHQ B;  3T63 M;  2BUV B;  3PCM M;  3PCD M;  2BV0 A;  3I4Y A;  3PCJ M;  4WHR A;  2BUU A;  3O6J A;  1YKK A;  3T67 M;  3MFL M;  4ILV A;  2XSV A;  2XSU A;  3PCB M;  3PCN A;  2BUM B;  3PCE A;  2BUW B;  4WHO B;  3PCC A;  1EOB A;  1TMX A;  4WHP B;  4WHS B;  4WHR F;  2AZQ A;  1EO2 A;  3PCF A;  1YKL B;  5TD3 A;  4WHQ A;  1DLT A;  2BUV A;  3LMX A;  1YKO B;  1YKP B;  3MV6 A;  1DLM A;  2BUX B;  2BUR B;  3HGI A;  3PCN M;  3O5U A;  3HKP A; 
#chains in the Genus database with same CATH homology
 3PCI M;  1S9A A;  3PCC M;  3MV4 A;  2BUQ B;  2BUT B;  1DLQ A;  3LKT A;  4WHO D;  3I51 A;  3PCH A;  3PCA A;  3PCF M;  1EOC B;  3PCL A;  4WHP D;  2BUY B;  3HHX A;  3LMX M;  3PCK A;  2PCD A;  2BUW A;  3PCD A;  4WHO A;  1YKM B;  3PCG A;  3O6R A;  3MV6 M;  1EOA B;  4WHP A;  3N9T A;  1YKN B;  3TH1 A;  1YKL A;  3LXV A;  3MI1 A;  3MI5 A;  3O32 A;  1EO9 B;  2BUZ B;  3HJQ A;  1YKO A;  3MV4 M;  1YKP A;  3LKT M;  3HJS A;  3PCE M;  3HJ8 A;  2XSR A;  2BOY A;  2BUR A;  3PCH M;  3PCA M;  3PCL M;  2BV0 B;  3PCK M;  2PCD M;  3T63 A;  3PCG M;  4WHS D;  2BUT A;  2BUM A;  2BUQ A;  3PCM A;  4WHR B;  2BUU B;  4ILT A;  1YKK B;  1DMH A;  3LXV M;  3MI1 M;  1EOC A;  3MI5 M;  4WHS A;  2BUY A;  3HHY A;  1YKM A;  3PCJ A;  1EOA A;  1EOB B;  3T67 A;  1YKN A;  3MFL A;  1EO2 B;  3PCI A;  2BUX A;  3I4V A;  3PCB A;  1EO9 A;  2BUZ A;  4WHQ B;  3T63 M;  2BUV B;  3PCM M;  3PCD M;  2BV0 A;  3I4Y A;  3PCJ M;  4WHR A;  2BUU A;  3O6J A;  1YKK A;  3T67 M;  3MFL M;  4ILV A;  2XSV A;  2XSU A;  3PCB M;  3PCN A;  2BUM B;  3PCE A;  2BUW B;  4WHO B;  3PCC A;  1EOB A;  1TMX A;  4WHP B;  4WHS B;  4WHR F;  2AZQ A;  1EO2 A;  3PCF A;  1YKL B;  5TD3 A;  4WHQ A;  1DLT A;  2BUV A;  3LMX A;  1YKO B;  1YKP B;  3MV6 A;  1DLM A;  2BUX B;  2BUR B;  3HGI A;  3PCN M;  3O5U A;  3HKP A; 
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