4UN7A

The crystal structure of i-dmoi in complex with its target dna before incubation in 5mm mn (state 1)
Total Genus 53
2040608010012014016018001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
184
structure length
184
Chain Sequence
NENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSHLNPLPP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (5-21)AH3 (85-97)S1 (22-28)S2 (34-42)TIV1 (29-32)S4 (77-83)TIV2 (30-33)TI1 (74-77)EMPTYAH2 (45-63)S3 (69-74)3H1 (98-100)AH4 (103-117)TVIII1 (122-125)TI2 (119-122)S7 (160-165)S5 (125-129)TI3 (155-158)TVIII2 (129-132)S6 (149-155)TI4 (156-159)3H2 (167-169)AH6 (170-177)TI5 (179-182)AH5 (132-144)Updating...
connected with : NaN
molecule tags Hydrolase/dna
source organism Desulfurococcus mobilis
publication title Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
pubmed doi rcsb
molecule keywords HOMING ENDONUCLEASE I-DMOI
total genus 53
structure length 184
sequence length 184
chains with identical sequence D
ec nomenclature ec 3.1.-.-:
pdb deposition date 2014-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14528 LAGLIDADG_3 LAGLIDADG-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4un7A01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4un7A02
4UNBA 4AABA 1U0DA 1JVAA 5A78A 5A77A 4YHXA 5AKMA 2VBJA 4Z1ZA 3QQYA 2O7MA 1M5XA 5E5OA 2VS8A 4LQ0A 1T9IA 5A0MA 3MXBA 4D6NA 4EFJA 3R7PA 4YISA 2VBLA 5E5SA 1B24A 4AAFA 2FLDA 3E54A 4UN7A 4UN8A 4UN7G 3OOLA 1DFAA 5A74A 1R7MA 2VBJB 5A72A 4Z1XA 2VBOA 3FD2A 4UNAA 1G9ZA 4AQUA 4UT0A 5A0MB 3MIPA 1G9YA 1U0CA 2VS7A 2I3PA 3HYJA 5E67A 3EH8A 4UN9A 1EF0A 2CW7A 2I3QA 1T9JA 4YITA 4AADA 5E63A 3OORA 4AAEA 3MXAA 2XE0A 1DQ3A 3UVFA 4UN8G 1AF5A 4Z20A 1VDEA 2VBOB 1N3FA 4AAGA 2VBNA 5A0WA 2DCHX 5AK9A 3C0XA 5AKFA 5AKNA 1MOWA 2EX5A 3MX9A 3MXBB 2CW8A 2AB5A 4LOXA 3HYIA 2VBLB 1N3EA 4UNCA 3MISA 4UN9G 3KO2A 2XE0B 4D6OA 3C0WA 1UM2A 4AQXA 1P8KZ 2QOJZ 1BP7A 2VBNB 1LWSA 1LWTA
chains in the Genus database with same CATH superfamily
4UNBA 4AABA 1U0DA 1JVAA 5A78A 5A77A 4YHXA 5AKMA 2VBJA 4Z1ZA 3QQYA 2O7MA 1M5XA 5E5OA 2VS8A 4LQ0A 1T9IA 5A0MA 3MXBA 4D6NA 4EFJA 3R7PA 4YISA 2VBLA 5E5SA 1B24A 4AAFA 2FLDA 3E54A 4UN7A 4UN8A 4UN7G 3OOLA 1DFAA 5A74A 1R7MA 4KZSA 2VBJB 5A72A 4Z1XA 2VBOA 3FD2A 4UNAA 1G9ZA 4AQUA 4UT0A 5A0MB 3MIPA 1G9YA 1U0CA 2VS7A 2I3PA 3HYJA 5E67A 3EH8A 4UN9A 1EF0A 2CW7A 2I3QA 1T9JA 4YITA 4AADA 5E63A 3OORA 4AAEA 3MXAA 2XE0A 1DQ3A 3UVFA 4UN8G 1AF5A 4Z20A 1VDEA 2VBOB 1N3FA 4AAGA 2VBNA 5A0WA 2DCHX 5AK9A 3C0XA 5AKFA 5AKNA 1MOWA 2EX5A 3MX9A 3MXBB 2CW8A 2AB5A 4LOXA 3HYIA 2VBLB 1N3EA 4UNCA 3MISA 4UN9G 3KO2A 2XE0B 4D6OA 3C0WA 1UM2A 4AQXA 1P8KZ 2QOJZ 1BP7A 2VBNB 2F4LA 1LWSA 1LWTA
chains in the Genus database with same CATH topology
4UNBA 4AABA 1U0DA 1JVAA 5A78A 5A77A 4YHXA 5AKMA 2VBJA 4Z1ZA 3QQYA 2O7MA 1M5XA 5E5OA 2VS8A 4LQ0A 1T9IA 5A0MA 3MXBA 4D6NA 4EFJA 3R7PA 4YISA 2VBLA 5E5SA 1B24A 4AAFA 2FLDA 3E54A 4UN7A 4UN8A 4UN7G 3OOLA 1DFAA 5A74A 1R7MA 2VBJB 5A72A 4Z1XA 2VBOA 3FD2A 4UNAA 1G9ZA 4AQUA 4UT0A 5A0MB 3MIPA 1G9YA 1U0CA 2VS7A 2I3PA 3HYJA 5E67A 3EH8A 4UN9A 1EF0A 2CW7A 2I3QA 1T9JA 4YITA 4AADA 5E63A 3OORA 4AAEA 3MXAA 2XE0A 1DQ3A 3UVFA 4UN8G 1AF5A 4Z20A 1VDEA 2VBOB 1N3FA 4AAGA 2VBNA 5A0WA 2DCHX 5AK9A 3C0XA 5AKFA 5AKNA 1MOWA 2EX5A 3MX9A 3MXBB 2CW8A 2AB5A 4LOXA 3HYIA 2VBLB 1N3EA 4UNCA 3MISA 4UN9G 3KO2A 2XE0B 4D6OA 3C0WA 1UM2A 4AQXA 1P8KZ 2QOJZ 1BP7A 2VBNB 1LWSA 1LWTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UNB A;  4AAB A;  1U0D A;  1JVA A;  5A78 A;  5A77 A;  4YHX A;  5AKM A;  2VBJ A;  4Z1Z A;  3QQY A;  2O7M A;  1M5X A;  5E5O A;  2VS8 A;  4LQ0 A;  1T9I A;  5A0M A;  3MXB A;  4D6N A;  4EFJ A;  3R7P A;  4YIS A;  2VBL A;  5E5S A;  1B24 A;  4AAF A;  2FLD A;  3E54 A;  4UN7 A;  4UN8 A;  4UN7 G;  3OOL A;  1DFA A;  5A74 A;  1R7M A;  2VBJ B;  5A72 A;  4Z1X A;  2VBO A;  3FD2 A;  4UNA A;  1G9Z A;  4AQU A;  4UT0 A;  5A0M B;  3MIP A;  1G9Y A;  1U0C A;  2VS7 A;  2I3P A;  3HYJ A;  5E67 A;  3EH8 A;  4UN9 A;  1EF0 A;  2CW7 A;  2I3Q A;  1T9J A;  4YIT A;  4AAD A;  5E63 A;  3OOR A;  4AAE A;  3MXA A;  2XE0 A;  1DQ3 A;  3UVF A;  4UN8 G;  1AF5 A;  4Z20 A;  1VDE A;  2VBO B;  1N3F A;  4AAG A;  2VBN A;  5A0W A;  2DCH X;  5AK9 A;  3C0X A;  5AKF A;  5AKN A;  1MOW A;  2EX5 A;  3MX9 A;  3MXB B;  2CW8 A;  2AB5 A;  4LOX A;  3HYI A;  2VBL B;  1N3E A;  4UNC A;  3MIS A;  4UN9 G;  3KO2 A;  2XE0 B;  4D6O A;  3C0W A;  1UM2 A;  4AQX A;  1P8K Z;  2QOJ Z;  1BP7 A;  2VBN B;  1LWS A;  1LWT A; 
#chains in the Genus database with same CATH topology
 4UNB A;  4AAB A;  1U0D A;  1JVA A;  5A78 A;  5A77 A;  4YHX A;  5AKM A;  2VBJ A;  4Z1Z A;  3QQY A;  2O7M A;  1M5X A;  5E5O A;  2VS8 A;  4LQ0 A;  1T9I A;  5A0M A;  3MXB A;  4D6N A;  4EFJ A;  3R7P A;  4YIS A;  2VBL A;  5E5S A;  1B24 A;  4AAF A;  2FLD A;  3E54 A;  4UN7 A;  4UN8 A;  4UN7 G;  3OOL A;  1DFA A;  5A74 A;  1R7M A;  4KZS A;  2VBJ B;  5A72 A;  4Z1X A;  2VBO A;  3FD2 A;  4UNA A;  1G9Z A;  4AQU A;  4UT0 A;  5A0M B;  3MIP A;  1G9Y A;  1U0C A;  2VS7 A;  2I3P A;  3HYJ A;  5E67 A;  3EH8 A;  4UN9 A;  1EF0 A;  2CW7 A;  2I3Q A;  1T9J A;  4YIT A;  4AAD A;  5E63 A;  3OOR A;  4AAE A;  3MXA A;  2XE0 A;  1DQ3 A;  3UVF A;  4UN8 G;  1AF5 A;  4Z20 A;  1VDE A;  2VBO B;  1N3F A;  4AAG A;  2VBN A;  5A0W A;  2DCH X;  5AK9 A;  3C0X A;  5AKF A;  5AKN A;  1MOW A;  2EX5 A;  3MX9 A;  3MXB B;  2CW8 A;  2AB5 A;  4LOX A;  3HYI A;  2VBL B;  1N3E A;  4UNC A;  3MIS A;  4UN9 G;  3KO2 A;  2XE0 B;  4D6O A;  3C0W A;  1UM2 A;  4AQX A;  1P8K Z;  2QOJ Z;  1BP7 A;  2VBN B;  2F4L A;  1LWS A;  1LWT A; 
#chains in the Genus database with same CATH homology
 4UNB A;  4AAB A;  1U0D A;  1JVA A;  5A78 A;  5A77 A;  4YHX A;  5AKM A;  2VBJ A;  4Z1Z A;  3QQY A;  2O7M A;  1M5X A;  5E5O A;  2VS8 A;  4LQ0 A;  1T9I A;  5A0M A;  3MXB A;  4D6N A;  4EFJ A;  3R7P A;  4YIS A;  2VBL A;  5E5S A;  1B24 A;  4AAF A;  2FLD A;  3E54 A;  4UN7 A;  4UN8 A;  4UN7 G;  3OOL A;  1DFA A;  5A74 A;  1R7M A;  2VBJ B;  5A72 A;  4Z1X A;  2VBO A;  3FD2 A;  4UNA A;  1G9Z A;  4AQU A;  4UT0 A;  5A0M B;  3MIP A;  1G9Y A;  1U0C A;  2VS7 A;  2I3P A;  3HYJ A;  5E67 A;  3EH8 A;  4UN9 A;  1EF0 A;  2CW7 A;  2I3Q A;  1T9J A;  4YIT A;  4AAD A;  5E63 A;  3OOR A;  4AAE A;  3MXA A;  2XE0 A;  1DQ3 A;  3UVF A;  4UN8 G;  1AF5 A;  4Z20 A;  1VDE A;  2VBO B;  1N3F A;  4AAG A;  2VBN A;  5A0W A;  2DCH X;  5AK9 A;  3C0X A;  5AKF A;  5AKN A;  1MOW A;  2EX5 A;  3MX9 A;  3MXB B;  2CW8 A;  2AB5 A;  4LOX A;  3HYI A;  2VBL B;  1N3E A;  4UNC A;  3MIS A;  4UN9 G;  3KO2 A;  2XE0 B;  4D6O A;  3C0W A;  1UM2 A;  4AQX A;  1P8K Z;  2QOJ Z;  1BP7 A;  2VBN B;  1LWS A;  1LWT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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