4UN7G

The crystal structure of i-dmoi in complex with its target dna before incubation in 5mm mn (state 1)
Total Genus 58
204060801001201401600102030405060
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
177
structure length
177
Chain Sequence
EEVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (5-21)AH3 (85-97)AH2 (45-63)TIV2 (30-33)TIV1 (29-32)S2 (34-42)S4 (77-83)TI1 (74-77)EMPTYS3 (69-74)AH4 (103-117)AH6 (170-178)TIV3 (122-125)S5 (125-129)S7 (160-165)TI2 (119-122)TIV4 (156-159)S6 (149-155)TI3 (155-158)3H2 (167-169)AH5 (132-145)TVIII1 (153-156)3H1 (98-100)S1 (22-28)Updating...
connected with : NaN
molecule tags Hydrolase/dna
source organism Desulfurococcus mobilis
publication title Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
pubmed doi rcsb
molecule keywords HOMING ENDONUCLEASE I-DMOI
total genus 58
structure length 177
sequence length 177
ec nomenclature ec 3.1.-.-:
pdb deposition date 2014-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF14528 LAGLIDADG_3 LAGLIDADG-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4un7G01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4un7G02
5AKNA 2DCHX 5A0WA 4Z1XA 2VBLA 1N3FA 4LQ0A 4YHXA 2XE0B 3R7PA 4UT0A 4AADA 4AQUA 5A78A 1LWTA 3OORA 4D6OA 4UN8A 3MISA 2VBOA 2EX5A 1DQ3A 2AB5A 4UN9A 3QQYA 1G9YA 4D6NA 5A0MB 5AK9A 3MIPA 4UNCA 2VBJB 4EFJA 3UVFA 2XE0A 3MX9A 2QOJZ 1T9IA 1B24A 2FLDA 2VBNA 4UNBA 3EH8A 5E63A 1LWSA 2I3PA 2I3QA 4UN7G 5AKFA 5A0MA 1AF5A 4UN9G 1MOWA 2VBJA 4AAGA 5A74A 1T9JA 5E5OA 3OOLA 1U0DA 1M5XA 5AKMA 5E67A 1U0CA 4YITA 1P8KZ 4UNAA 3HYJA 4LOXA 3HYIA 1EF0A 4AQXA 3E54A 2CW8A 4AAEA 4AAFA 1N3EA 2VS7A 4UN8G 4AABA 3MXBB 5A72A 1JVAA 1UM2A 4Z20A 2VBOB 1R7MA 3MXBA 2CW7A 5A77A 1G9ZA 3KO2A 2O7MA 1VDEA 2VBLB 1DFAA 3MXAA 2VS8A 3FD2A 2VBNB 1BP7A 5E5SA 3C0WA 4UN7A 3C0XA 4Z1ZA 4YISA
chains in the Genus database with same CATH superfamily
5AKNA 2DCHX 5A0WA 4Z1XA 2VBLA 1N3FA 4KZSA 4LQ0A 4YHXA 2XE0B 3R7PA 4UT0A 4AADA 4AQUA 5A78A 1LWTA 3OORA 4D6OA 4UN8A 3MISA 2VBOA 2EX5A 1DQ3A 2AB5A 4UN9A 3QQYA 1G9YA 4D6NA 5A0MB 5AK9A 3MIPA 4UNCA 2VBJB 4EFJA 3UVFA 2XE0A 3MX9A 2QOJZ 1T9IA 1B24A 2FLDA 2VBNA 4UNBA 3EH8A 5E63A 1LWSA 2I3PA 2I3QA 4UN7G 5AKFA 5A0MA 1AF5A 4UN9G 1MOWA 2VBJA 4AAGA 5A74A 1T9JA 5E5OA 3OOLA 1U0DA 1M5XA 5AKMA 5E67A 1U0CA 4YITA 1P8KZ 4UNAA 3HYJA 4LOXA 3HYIA 1EF0A 4AQXA 3E54A 2CW8A 4AAEA 4AAFA 1N3EA 2VS7A 4UN8G 4AABA 3MXBB 5A72A 1JVAA 1UM2A 4Z20A 2VBOB 1R7MA 3MXBA 2CW7A 5A77A 1G9ZA 3KO2A 2O7MA 1VDEA 2VBLB 1DFAA 3MXAA 2VS8A 3FD2A 2VBNB 1BP7A 5E5SA 3C0WA 2F4LA 4UN7A 3C0XA 4Z1ZA 4YISA
chains in the Genus database with same CATH topology
5AKNA 2DCHX 5A0WA 4Z1XA 2VBLA 1N3FA 4LQ0A 4YHXA 2XE0B 3R7PA 4UT0A 4AADA 4AQUA 5A78A 1LWTA 3OORA 4D6OA 4UN8A 3MISA 2VBOA 2EX5A 1DQ3A 2AB5A 4UN9A 3QQYA 1G9YA 4D6NA 5A0MB 5AK9A 3MIPA 4UNCA 2VBJB 4EFJA 3UVFA 2XE0A 3MX9A 2QOJZ 1T9IA 1B24A 2FLDA 2VBNA 4UNBA 3EH8A 5E63A 1LWSA 2I3PA 2I3QA 4UN7G 5AKFA 5A0MA 1AF5A 4UN9G 1MOWA 2VBJA 4AAGA 5A74A 1T9JA 5E5OA 3OOLA 1U0DA 1M5XA 5AKMA 5E67A 1U0CA 4YITA 1P8KZ 4UNAA 3HYJA 4LOXA 3HYIA 1EF0A 4AQXA 3E54A 2CW8A 4AAEA 4AAFA 1N3EA 2VS7A 4UN8G 4AABA 3MXBB 5A72A 1JVAA 1UM2A 4Z20A 2VBOB 1R7MA 3MXBA 2CW7A 5A77A 1G9ZA 3KO2A 2O7MA 1VDEA 2VBLB 1DFAA 3MXAA 2VS8A 3FD2A 2VBNB 1BP7A 5E5SA 3C0WA 4UN7A 3C0XA 4Z1ZA 4YISA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AKN A;  2DCH X;  5A0W A;  4Z1X A;  2VBL A;  1N3F A;  4LQ0 A;  4YHX A;  2XE0 B;  3R7P A;  4UT0 A;  4AAD A;  4AQU A;  5A78 A;  1LWT A;  3OOR A;  4D6O A;  4UN8 A;  3MIS A;  2VBO A;  2EX5 A;  1DQ3 A;  2AB5 A;  4UN9 A;  3QQY A;  1G9Y A;  4D6N A;  5A0M B;  5AK9 A;  3MIP A;  4UNC A;  2VBJ B;  4EFJ A;  3UVF A;  2XE0 A;  3MX9 A;  2QOJ Z;  1T9I A;  1B24 A;  2FLD A;  2VBN A;  4UNB A;  3EH8 A;  5E63 A;  1LWS A;  2I3P A;  2I3Q A;  4UN7 G;  5AKF A;  5A0M A;  1AF5 A;  4UN9 G;  1MOW A;  2VBJ A;  4AAG A;  5A74 A;  1T9J A;  5E5O A;  3OOL A;  1U0D A;  1M5X A;  5AKM A;  5E67 A;  1U0C A;  4YIT A;  1P8K Z;  4UNA A;  3HYJ A;  4LOX A;  3HYI A;  1EF0 A;  4AQX A;  3E54 A;  2CW8 A;  4AAE A;  4AAF A;  1N3E A;  2VS7 A;  4UN8 G;  4AAB A;  3MXB B;  5A72 A;  1JVA A;  1UM2 A;  4Z20 A;  2VBO B;  1R7M A;  3MXB A;  2CW7 A;  5A77 A;  1G9Z A;  3KO2 A;  2O7M A;  1VDE A;  2VBL B;  1DFA A;  3MXA A;  2VS8 A;  3FD2 A;  2VBN B;  1BP7 A;  5E5S A;  3C0W A;  4UN7 A;  3C0X A;  4Z1Z A;  4YIS A; 
#chains in the Genus database with same CATH topology
 5AKN A;  2DCH X;  5A0W A;  4Z1X A;  2VBL A;  1N3F A;  4KZS A;  4LQ0 A;  4YHX A;  2XE0 B;  3R7P A;  4UT0 A;  4AAD A;  4AQU A;  5A78 A;  1LWT A;  3OOR A;  4D6O A;  4UN8 A;  3MIS A;  2VBO A;  2EX5 A;  1DQ3 A;  2AB5 A;  4UN9 A;  3QQY A;  1G9Y A;  4D6N A;  5A0M B;  5AK9 A;  3MIP A;  4UNC A;  2VBJ B;  4EFJ A;  3UVF A;  2XE0 A;  3MX9 A;  2QOJ Z;  1T9I A;  1B24 A;  2FLD A;  2VBN A;  4UNB A;  3EH8 A;  5E63 A;  1LWS A;  2I3P A;  2I3Q A;  4UN7 G;  5AKF A;  5A0M A;  1AF5 A;  4UN9 G;  1MOW A;  2VBJ A;  4AAG A;  5A74 A;  1T9J A;  5E5O A;  3OOL A;  1U0D A;  1M5X A;  5AKM A;  5E67 A;  1U0C A;  4YIT A;  1P8K Z;  4UNA A;  3HYJ A;  4LOX A;  3HYI A;  1EF0 A;  4AQX A;  3E54 A;  2CW8 A;  4AAE A;  4AAF A;  1N3E A;  2VS7 A;  4UN8 G;  4AAB A;  3MXB B;  5A72 A;  1JVA A;  1UM2 A;  4Z20 A;  2VBO B;  1R7M A;  3MXB A;  2CW7 A;  5A77 A;  1G9Z A;  3KO2 A;  2O7M A;  1VDE A;  2VBL B;  1DFA A;  3MXA A;  2VS8 A;  3FD2 A;  2VBN B;  1BP7 A;  5E5S A;  3C0W A;  2F4L A;  4UN7 A;  3C0X A;  4Z1Z A;  4YIS A; 
#chains in the Genus database with same CATH homology
 5AKN A;  2DCH X;  5A0W A;  4Z1X A;  2VBL A;  1N3F A;  4LQ0 A;  4YHX A;  2XE0 B;  3R7P A;  4UT0 A;  4AAD A;  4AQU A;  5A78 A;  1LWT A;  3OOR A;  4D6O A;  4UN8 A;  3MIS A;  2VBO A;  2EX5 A;  1DQ3 A;  2AB5 A;  4UN9 A;  3QQY A;  1G9Y A;  4D6N A;  5A0M B;  5AK9 A;  3MIP A;  4UNC A;  2VBJ B;  4EFJ A;  3UVF A;  2XE0 A;  3MX9 A;  2QOJ Z;  1T9I A;  1B24 A;  2FLD A;  2VBN A;  4UNB A;  3EH8 A;  5E63 A;  1LWS A;  2I3P A;  2I3Q A;  4UN7 G;  5AKF A;  5A0M A;  1AF5 A;  4UN9 G;  1MOW A;  2VBJ A;  4AAG A;  5A74 A;  1T9J A;  5E5O A;  3OOL A;  1U0D A;  1M5X A;  5AKM A;  5E67 A;  1U0C A;  4YIT A;  1P8K Z;  4UNA A;  3HYJ A;  4LOX A;  3HYI A;  1EF0 A;  4AQX A;  3E54 A;  2CW8 A;  4AAE A;  4AAF A;  1N3E A;  2VS7 A;  4UN8 G;  4AAB A;  3MXB B;  5A72 A;  1JVA A;  1UM2 A;  4Z20 A;  2VBO B;  1R7M A;  3MXB A;  2CW7 A;  5A77 A;  1G9Z A;  3KO2 A;  2O7M A;  1VDE A;  2VBL B;  1DFA A;  3MXA A;  2VS8 A;  3FD2 A;  2VBN B;  1BP7 A;  5E5S A;  3C0W A;  4UN7 A;  3C0X A;  4Z1Z A;  4YIS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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