4UN7G

The crystal structure of i-dmoi in complex with its target dna before incubation in 5mm mn (state 1)
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
177
structure length
177
Chain Sequence
EEVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
pubmed doi rcsb
molecule tags Hydrolase/dna
source organism Desulfurococcus mobilis
molecule keywords HOMING ENDONUCLEASE I-DMOI
total genus 58
structure length 177
sequence length 177
ec nomenclature ec 3.1.-.-:
pdb deposition date 2014-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF14528 LAGLIDADG_3 LAGLIDADG-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4un7G01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4un7G02
3E54A 5A0WA 5A78A 2VS8A 3OORA 1G9YA 3MIPA 4AABA 4UNCA 5E67A 2CW7A 4D6OA 3KO2A 1N3EA 3MXBA 2QOJZ 1JVAA 3C0WA 5A0MA 5AKFA 4UNAA 2EX5A 2VBOB 1BP7A 1EF0A 2DCHX 5E5SA 3FD2A 4AAGA 3R7PA 2XE0A 4AAFA 2VBNA 2AB5A 1LWSA 4YHXA 4LOXA 5AKNA 5AKMA 3MISA 1UM2A 1G9ZA 1M5XA 2O7MA 3OOLA 2VBJB 4AQXA 1B24A 4LQ0A 1DFAA 2CW8A 4UNBA 1T9JA 4Z1XA 4UT0A 4AADA 3MXAA 3HYJA 2VBJA 4UN7G 5E63A 4UN9G 4Z20A 3EH8A 1MOWA 1T9IA 4D6NA 3MXBB 2VBOA 5A72A 4UN8G 1DQ3A 3C0XA 5A0MB 1N3FA 4AQUA 5A74A 4YITA 4AAEA 1AF5A 1U0DA 2XE0B 2VBNB 3HYIA 2VBLB 5A77A 1P8KZ 4UN8A 5AK9A 1LWTA 1R7MA 1U0CA 5E5OA 3QQYA 2VS7A 2I3QA 3MX9A 1VDEA 4YISA 4Z1ZA 2FLDA 4EFJA 3UVFA 4UN7A 2VBLA 4UN9A 2I3PA
chains in the Genus database with same CATH superfamily
3E54A 5A0WA 5A78A 2VS8A 3OORA 1G9YA 3MIPA 4AABA 4UNCA 5E67A 2CW7A 4D6OA 3KO2A 1N3EA 3MXBA 2QOJZ 1JVAA 3C0WA 5A0MA 5AKFA 4UNAA 2EX5A 2VBOB 1BP7A 1EF0A 2DCHX 5E5SA 3FD2A 4AAGA 3R7PA 2XE0A 4AAFA 2VBNA 2AB5A 1LWSA 4YHXA 4LOXA 5AKNA 5AKMA 3MISA 1UM2A 1G9ZA 1M5XA 2O7MA 3OOLA 2VBJB 4AQXA 1B24A 4LQ0A 1DFAA 2CW8A 4UNBA 1T9JA 4Z1XA 4UT0A 4AADA 3MXAA 3HYJA 2VBJA 4UN7G 5E63A 4UN9G 4Z20A 3EH8A 1MOWA 2F4LA 1T9IA 4D6NA 3MXBB 2VBOA 5A72A 4UN8G 1DQ3A 3C0XA 5A0MB 1N3FA 4AQUA 5A74A 4YITA 4AAEA 1AF5A 1U0DA 2XE0B 2VBNB 4KZSA 3HYIA 2VBLB 5A77A 1P8KZ 4UN8A 5AK9A 1LWTA 1R7MA 1U0CA 5E5OA 3QQYA 2VS7A 2I3QA 3MX9A 1VDEA 4YISA 4Z1ZA 2FLDA 4EFJA 3UVFA 4UN7A 2VBLA 4UN9A 2I3PA
chains in the Genus database with same CATH topology
3E54A 5A0WA 5A78A 2VS8A 3OORA 1G9YA 3MIPA 4AABA 4UNCA 5E67A 2CW7A 4D6OA 3KO2A 1N3EA 3MXBA 2QOJZ 1JVAA 3C0WA 5A0MA 5AKFA 4UNAA 2EX5A 2VBOB 1BP7A 1EF0A 2DCHX 5E5SA 3FD2A 4AAGA 3R7PA 2XE0A 4AAFA 2VBNA 2AB5A 1LWSA 4YHXA 4LOXA 5AKNA 5AKMA 3MISA 1UM2A 1G9ZA 1M5XA 2O7MA 3OOLA 2VBJB 4AQXA 1B24A 4LQ0A 1DFAA 2CW8A 4UNBA 1T9JA 4Z1XA 4UT0A 4AADA 3MXAA 3HYJA 2VBJA 4UN7G 5E63A 4UN9G 4Z20A 3EH8A 1MOWA 1T9IA 4D6NA 3MXBB 2VBOA 5A72A 4UN8G 1DQ3A 3C0XA 5A0MB 1N3FA 4AQUA 5A74A 4YITA 4AAEA 1AF5A 1U0DA 2XE0B 2VBNB 3HYIA 2VBLB 5A77A 1P8KZ 4UN8A 5AK9A 1LWTA 1R7MA 1U0CA 5E5OA 3QQYA 2VS7A 2I3QA 3MX9A 1VDEA 4YISA 4Z1ZA 2FLDA 4EFJA 3UVFA 4UN7A 2VBLA 4UN9A 2I3PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E54 A;  5A0W A;  5A78 A;  2VS8 A;  3OOR A;  1G9Y A;  3MIP A;  4AAB A;  4UNC A;  5E67 A;  2CW7 A;  4D6O A;  3KO2 A;  1N3E A;  3MXB A;  2QOJ Z;  1JVA A;  3C0W A;  5A0M A;  5AKF A;  4UNA A;  2EX5 A;  2VBO B;  1BP7 A;  1EF0 A;  2DCH X;  5E5S A;  3FD2 A;  4AAG A;  3R7P A;  2XE0 A;  4AAF A;  2VBN A;  2AB5 A;  1LWS A;  4YHX A;  4LOX A;  5AKN A;  5AKM A;  3MIS A;  1UM2 A;  1G9Z A;  1M5X A;  2O7M A;  3OOL A;  2VBJ B;  4AQX A;  1B24 A;  4LQ0 A;  1DFA A;  2CW8 A;  4UNB A;  1T9J A;  4Z1X A;  4UT0 A;  4AAD A;  3MXA A;  3HYJ A;  2VBJ A;  4UN7 G;  5E63 A;  4UN9 G;  4Z20 A;  3EH8 A;  1MOW A;  1T9I A;  4D6N A;  3MXB B;  2VBO A;  5A72 A;  4UN8 G;  1DQ3 A;  3C0X A;  5A0M B;  1N3F A;  4AQU A;  5A74 A;  4YIT A;  4AAE A;  1AF5 A;  1U0D A;  2XE0 B;  2VBN B;  3HYI A;  2VBL B;  5A77 A;  1P8K Z;  4UN8 A;  5AK9 A;  1LWT A;  1R7M A;  1U0C A;  5E5O A;  3QQY A;  2VS7 A;  2I3Q A;  3MX9 A;  1VDE A;  4YIS A;  4Z1Z A;  2FLD A;  4EFJ A;  3UVF A;  4UN7 A;  2VBL A;  4UN9 A;  2I3P A; 
#chains in the Genus database with same CATH topology
 3E54 A;  5A0W A;  5A78 A;  2VS8 A;  3OOR A;  1G9Y A;  3MIP A;  4AAB A;  4UNC A;  5E67 A;  2CW7 A;  4D6O A;  3KO2 A;  1N3E A;  3MXB A;  2QOJ Z;  1JVA A;  3C0W A;  5A0M A;  5AKF A;  4UNA A;  2EX5 A;  2VBO B;  1BP7 A;  1EF0 A;  2DCH X;  5E5S A;  3FD2 A;  4AAG A;  3R7P A;  2XE0 A;  4AAF A;  2VBN A;  2AB5 A;  1LWS A;  4YHX A;  4LOX A;  5AKN A;  5AKM A;  3MIS A;  1UM2 A;  1G9Z A;  1M5X A;  2O7M A;  3OOL A;  2VBJ B;  4AQX A;  1B24 A;  4LQ0 A;  1DFA A;  2CW8 A;  4UNB A;  1T9J A;  4Z1X A;  4UT0 A;  4AAD A;  3MXA A;  3HYJ A;  2VBJ A;  4UN7 G;  5E63 A;  4UN9 G;  4Z20 A;  3EH8 A;  1MOW A;  2F4L A;  1T9I A;  4D6N A;  3MXB B;  2VBO A;  5A72 A;  4UN8 G;  1DQ3 A;  3C0X A;  5A0M B;  1N3F A;  4AQU A;  5A74 A;  4YIT A;  4AAE A;  1AF5 A;  1U0D A;  2XE0 B;  2VBN B;  4KZS A;  3HYI A;  2VBL B;  5A77 A;  1P8K Z;  4UN8 A;  5AK9 A;  1LWT A;  1R7M A;  1U0C A;  5E5O A;  3QQY A;  2VS7 A;  2I3Q A;  3MX9 A;  1VDE A;  4YIS A;  4Z1Z A;  2FLD A;  4EFJ A;  3UVF A;  4UN7 A;  2VBL A;  4UN9 A;  2I3P A; 
#chains in the Genus database with same CATH homology
 3E54 A;  5A0W A;  5A78 A;  2VS8 A;  3OOR A;  1G9Y A;  3MIP A;  4AAB A;  4UNC A;  5E67 A;  2CW7 A;  4D6O A;  3KO2 A;  1N3E A;  3MXB A;  2QOJ Z;  1JVA A;  3C0W A;  5A0M A;  5AKF A;  4UNA A;  2EX5 A;  2VBO B;  1BP7 A;  1EF0 A;  2DCH X;  5E5S A;  3FD2 A;  4AAG A;  3R7P A;  2XE0 A;  4AAF A;  2VBN A;  2AB5 A;  1LWS A;  4YHX A;  4LOX A;  5AKN A;  5AKM A;  3MIS A;  1UM2 A;  1G9Z A;  1M5X A;  2O7M A;  3OOL A;  2VBJ B;  4AQX A;  1B24 A;  4LQ0 A;  1DFA A;  2CW8 A;  4UNB A;  1T9J A;  4Z1X A;  4UT0 A;  4AAD A;  3MXA A;  3HYJ A;  2VBJ A;  4UN7 G;  5E63 A;  4UN9 G;  4Z20 A;  3EH8 A;  1MOW A;  1T9I A;  4D6N A;  3MXB B;  2VBO A;  5A72 A;  4UN8 G;  1DQ3 A;  3C0X A;  5A0M B;  1N3F A;  4AQU A;  5A74 A;  4YIT A;  4AAE A;  1AF5 A;  1U0D A;  2XE0 B;  2VBN B;  3HYI A;  2VBL B;  5A77 A;  1P8K Z;  4UN8 A;  5AK9 A;  1LWT A;  1R7M A;  1U0C A;  5E5O A;  3QQY A;  2VS7 A;  2I3Q A;  3MX9 A;  1VDE A;  4YIS A;  4Z1Z A;  2FLD A;  4EFJ A;  3UVF A;  4UN7 A;  2VBL A;  4UN9 A;  2I3P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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