4UN7G

The crystal structure of i-dmoi in complex with its target dna before incubation in 5mm mn (state 1)
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
177
structure length
177
Chain Sequence
EEVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
pubmed doi rcsb
molecule tags Hydrolase/dna
source organism Desulfurococcus mobilis
molecule keywords HOMING ENDONUCLEASE I-DMOI
total genus 58
structure length 177
sequence length 177
ec nomenclature ec 3.1.-.-:
pdb deposition date 2014-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF14528 LAGLIDADG_3 LAGLIDADG-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4un7G01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4un7G02
4AABA 4YHXA 1T9JA 4YISA 3C0XA 3QQYA 2VBJA 2EX5A 2VBLA 4Z1ZA 5A0WA 4UNBA 4AADA 2XE0A 1AF5A 3MX9A 1N3FA 3KO2A 2DCHX 1M5XA 3MXAA 4UN9G 2I3QA 1LWSA 5A72A 2VBLB 4UNAA 4UNCA 2VS8A 1LWTA 3MIPA 1B24A 1DQ3A 2XE0B 2O7MA 4UN9A 4Z20A 4AAGA 3R7PA 3E54A 4YITA 1T9IA 3FD2A 3MXBA 1VDEA 5E5SA 3OOLA 4Z1XA 2VBOB 2FLDA 1U0DA 2VBNA 1R7MA 3HYIA 2VBOA 2QOJZ 5AKMA 1G9YA 2CW8A 5A0MA 1U0CA 3MISA 4UN7G 5AKFA 3MXBB 4AAEA 4UN8G 4UT0A 5E5OA 5AK9A 4LQ0A 3EH8A 5A77A 4D6NA 1G9ZA 4UN7A 4AQUA 5A74A 2VBNB 4AAFA 4LOXA 3HYJA 4EFJA 4UN8A 1P8KZ 5A0MB 1UM2A 2CW7A 2VS7A 2I3PA 1BP7A 3C0WA 2AB5A 5A78A 1MOWA 1EF0A 5E67A 5AKNA 3UVFA 3OORA 4D6OA 1DFAA 1JVAA 4AQXA 1N3EA 5E63A 2VBJB
chains in the Genus database with same CATH superfamily
4AABA 4YHXA 1T9JA 4YISA 3C0XA 3QQYA 2VBJA 2EX5A 2VBLA 4Z1ZA 5A0WA 4UNBA 4AADA 2F4LA 2XE0A 1AF5A 3MX9A 1N3FA 3KO2A 2DCHX 1M5XA 3MXAA 4UN9G 2I3QA 1LWSA 5A72A 2VBLB 4UNAA 4UNCA 2VS8A 1LWTA 3MIPA 1B24A 1DQ3A 2XE0B 2O7MA 4UN9A 4Z20A 4AAGA 3R7PA 3E54A 4YITA 1T9IA 3FD2A 3MXBA 1VDEA 5E5SA 3OOLA 4Z1XA 2VBOB 2FLDA 1U0DA 2VBNA 1R7MA 3HYIA 2VBOA 2QOJZ 4KZSA 5AKMA 1G9YA 2CW8A 5A0MA 1U0CA 3MISA 4UN7G 5AKFA 3MXBB 4AAEA 4UN8G 4UT0A 5E5OA 5AK9A 4LQ0A 3EH8A 5A77A 4D6NA 1G9ZA 4UN7A 4AQUA 5A74A 2VBNB 4AAFA 4LOXA 3HYJA 4EFJA 4UN8A 1P8KZ 5A0MB 1UM2A 2CW7A 2VS7A 2I3PA 1BP7A 3C0WA 2AB5A 5A78A 1MOWA 1EF0A 5E67A 5AKNA 3UVFA 3OORA 4D6OA 1DFAA 1JVAA 4AQXA 1N3EA 5E63A 2VBJB
chains in the Genus database with same CATH topology
4AABA 4YHXA 1T9JA 4YISA 3C0XA 3QQYA 2VBJA 2EX5A 2VBLA 4Z1ZA 5A0WA 4UNBA 4AADA 2XE0A 1AF5A 3MX9A 1N3FA 3KO2A 2DCHX 1M5XA 3MXAA 4UN9G 2I3QA 1LWSA 5A72A 2VBLB 4UNAA 4UNCA 2VS8A 1LWTA 3MIPA 1B24A 1DQ3A 2XE0B 2O7MA 4UN9A 4Z20A 4AAGA 3R7PA 3E54A 4YITA 1T9IA 3FD2A 3MXBA 1VDEA 5E5SA 3OOLA 4Z1XA 2VBOB 2FLDA 1U0DA 2VBNA 1R7MA 3HYIA 2VBOA 2QOJZ 5AKMA 1G9YA 2CW8A 5A0MA 1U0CA 3MISA 4UN7G 5AKFA 3MXBB 4AAEA 4UN8G 4UT0A 5E5OA 5AK9A 4LQ0A 3EH8A 5A77A 4D6NA 1G9ZA 4UN7A 4AQUA 5A74A 2VBNB 4AAFA 4LOXA 3HYJA 4EFJA 4UN8A 1P8KZ 5A0MB 1UM2A 2CW7A 2VS7A 2I3PA 1BP7A 3C0WA 2AB5A 5A78A 1MOWA 1EF0A 5E67A 5AKNA 3UVFA 3OORA 4D6OA 1DFAA 1JVAA 4AQXA 1N3EA 5E63A 2VBJB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AAB A;  4YHX A;  1T9J A;  4YIS A;  3C0X A;  3QQY A;  2VBJ A;  2EX5 A;  2VBL A;  4Z1Z A;  5A0W A;  4UNB A;  4AAD A;  2XE0 A;  1AF5 A;  3MX9 A;  1N3F A;  3KO2 A;  2DCH X;  1M5X A;  3MXA A;  4UN9 G;  2I3Q A;  1LWS A;  5A72 A;  2VBL B;  4UNA A;  4UNC A;  2VS8 A;  1LWT A;  3MIP A;  1B24 A;  1DQ3 A;  2XE0 B;  2O7M A;  4UN9 A;  4Z20 A;  4AAG A;  3R7P A;  3E54 A;  4YIT A;  1T9I A;  3FD2 A;  3MXB A;  1VDE A;  5E5S A;  3OOL A;  4Z1X A;  2VBO B;  2FLD A;  1U0D A;  2VBN A;  1R7M A;  3HYI A;  2VBO A;  2QOJ Z;  5AKM A;  1G9Y A;  2CW8 A;  5A0M A;  1U0C A;  3MIS A;  4UN7 G;  5AKF A;  3MXB B;  4AAE A;  4UN8 G;  4UT0 A;  5E5O A;  5AK9 A;  4LQ0 A;  3EH8 A;  5A77 A;  4D6N A;  1G9Z A;  4UN7 A;  4AQU A;  5A74 A;  2VBN B;  4AAF A;  4LOX A;  3HYJ A;  4EFJ A;  4UN8 A;  1P8K Z;  5A0M B;  1UM2 A;  2CW7 A;  2VS7 A;  2I3P A;  1BP7 A;  3C0W A;  2AB5 A;  5A78 A;  1MOW A;  1EF0 A;  5E67 A;  5AKN A;  3UVF A;  3OOR A;  4D6O A;  1DFA A;  1JVA A;  4AQX A;  1N3E A;  5E63 A;  2VBJ B; 
#chains in the Genus database with same CATH topology
 4AAB A;  4YHX A;  1T9J A;  4YIS A;  3C0X A;  3QQY A;  2VBJ A;  2EX5 A;  2VBL A;  4Z1Z A;  5A0W A;  4UNB A;  4AAD A;  2F4L A;  2XE0 A;  1AF5 A;  3MX9 A;  1N3F A;  3KO2 A;  2DCH X;  1M5X A;  3MXA A;  4UN9 G;  2I3Q A;  1LWS A;  5A72 A;  2VBL B;  4UNA A;  4UNC A;  2VS8 A;  1LWT A;  3MIP A;  1B24 A;  1DQ3 A;  2XE0 B;  2O7M A;  4UN9 A;  4Z20 A;  4AAG A;  3R7P A;  3E54 A;  4YIT A;  1T9I A;  3FD2 A;  3MXB A;  1VDE A;  5E5S A;  3OOL A;  4Z1X A;  2VBO B;  2FLD A;  1U0D A;  2VBN A;  1R7M A;  3HYI A;  2VBO A;  2QOJ Z;  4KZS A;  5AKM A;  1G9Y A;  2CW8 A;  5A0M A;  1U0C A;  3MIS A;  4UN7 G;  5AKF A;  3MXB B;  4AAE A;  4UN8 G;  4UT0 A;  5E5O A;  5AK9 A;  4LQ0 A;  3EH8 A;  5A77 A;  4D6N A;  1G9Z A;  4UN7 A;  4AQU A;  5A74 A;  2VBN B;  4AAF A;  4LOX A;  3HYJ A;  4EFJ A;  4UN8 A;  1P8K Z;  5A0M B;  1UM2 A;  2CW7 A;  2VS7 A;  2I3P A;  1BP7 A;  3C0W A;  2AB5 A;  5A78 A;  1MOW A;  1EF0 A;  5E67 A;  5AKN A;  3UVF A;  3OOR A;  4D6O A;  1DFA A;  1JVA A;  4AQX A;  1N3E A;  5E63 A;  2VBJ B; 
#chains in the Genus database with same CATH homology
 4AAB A;  4YHX A;  1T9J A;  4YIS A;  3C0X A;  3QQY A;  2VBJ A;  2EX5 A;  2VBL A;  4Z1Z A;  5A0W A;  4UNB A;  4AAD A;  2XE0 A;  1AF5 A;  3MX9 A;  1N3F A;  3KO2 A;  2DCH X;  1M5X A;  3MXA A;  4UN9 G;  2I3Q A;  1LWS A;  5A72 A;  2VBL B;  4UNA A;  4UNC A;  2VS8 A;  1LWT A;  3MIP A;  1B24 A;  1DQ3 A;  2XE0 B;  2O7M A;  4UN9 A;  4Z20 A;  4AAG A;  3R7P A;  3E54 A;  4YIT A;  1T9I A;  3FD2 A;  3MXB A;  1VDE A;  5E5S A;  3OOL A;  4Z1X A;  2VBO B;  2FLD A;  1U0D A;  2VBN A;  1R7M A;  3HYI A;  2VBO A;  2QOJ Z;  5AKM A;  1G9Y A;  2CW8 A;  5A0M A;  1U0C A;  3MIS A;  4UN7 G;  5AKF A;  3MXB B;  4AAE A;  4UN8 G;  4UT0 A;  5E5O A;  5AK9 A;  4LQ0 A;  3EH8 A;  5A77 A;  4D6N A;  1G9Z A;  4UN7 A;  4AQU A;  5A74 A;  2VBN B;  4AAF A;  4LOX A;  3HYJ A;  4EFJ A;  4UN8 A;  1P8K Z;  5A0M B;  1UM2 A;  2CW7 A;  2VS7 A;  2I3P A;  1BP7 A;  3C0W A;  2AB5 A;  5A78 A;  1MOW A;  1EF0 A;  5E67 A;  5AKN A;  3UVF A;  3OOR A;  4D6O A;  1DFA A;  1JVA A;  4AQX A;  1N3E A;  5E63 A;  2VBJ B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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