4UN8A

The crystal structure of i-dmoi in complex with its target dna at 1h incubation in 5mm mn (state 2)
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
184
structure length
184
Chain Sequence
NENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSHLNPLPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
pubmed doi rcsb
molecule tags Hydrolase/dna
source organism Desulfurococcus mobilis
molecule keywords HOMING ENDONUCLEASE I-DMOI
total genus 54
structure length 184
sequence length 184
chains with identical sequence D
ec nomenclature ec 3.1.-.-:
pdb deposition date 2014-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14528 LAGLIDADG_3 LAGLIDADG-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4un8A01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4un8A02
5AKFA 3E54A 4UN9A 1T9JA 2CW7A 3HYIA 2DCHX 5A78A 5AKNA 2VBOA 4AABA 1G9YA 5E5OA 1U0CA 1UM2A 2VBJA 5A72A 3OOLA 3C0XA 5AK9A 5A0MA 2CW8A 4UN8G 3KO2A 3MIPA 3MX9A 2EX5A 2QOJZ 5A77A 2VBOB 4AAEA 2AB5A 2VBLB 2VBJB 1U0DA 3R7PA 1T9IA 2VS7A 5A0MB 1DFAA 3OORA 2VBLA 4UN7G 1N3EA 1VDEA 3MXBA 2VS8A 4AQUA 4EFJA 1R7MA 5A74A 4LQ0A 2FLDA 4AAGA 4Z1ZA 4LOXA 3QQYA 1DQ3A 3MXBB 1LWTA 3C0WA 4Z1XA 5E5SA 3FD2A 1EF0A 1LWSA 5E63A 4AAFA 4UN9G 4AQXA 3EH8A 2I3QA 2XE0A 5E67A 4UNBA 5A0WA 1MOWA 4UNCA 4D6NA 2I3PA 4UN8A 4Z20A 1B24A 2VBNB 1BP7A 1M5XA 3UVFA 1AF5A 1P8KZ 4YITA 2XE0B 1JVAA 3HYJA 1G9ZA 3MISA 2VBNA 4D6OA 4YHXA 4AADA 4UN7A 4YISA 4UNAA 5AKMA 3MXAA 2O7MA 4UT0A 1N3FA
chains in the Genus database with same CATH superfamily
5AKFA 3E54A 4UN9A 1T9JA 2CW7A 3HYIA 2DCHX 5A78A 5AKNA 2VBOA 4AABA 1G9YA 5E5OA 1U0CA 1UM2A 2VBJA 5A72A 3OOLA 3C0XA 4KZSA 5AK9A 5A0MA 2CW8A 4UN8G 3KO2A 3MIPA 3MX9A 2EX5A 2QOJZ 5A77A 2VBOB 4AAEA 2AB5A 2VBLB 2VBJB 1U0DA 3R7PA 1T9IA 2VS7A 5A0MB 1DFAA 3OORA 2VBLA 4UN7G 1N3EA 1VDEA 3MXBA 2VS8A 4AQUA 4EFJA 1R7MA 5A74A 4LQ0A 2FLDA 4AAGA 4Z1ZA 4LOXA 3QQYA 1DQ3A 3MXBB 1LWTA 3C0WA 4Z1XA 5E5SA 3FD2A 1EF0A 1LWSA 5E63A 4AAFA 4UN9G 4AQXA 3EH8A 2I3QA 2XE0A 5E67A 4UNBA 5A0WA 1MOWA 4UNCA 4D6NA 2I3PA 4UN8A 4Z20A 1B24A 2VBNB 1BP7A 2F4LA 1M5XA 3UVFA 1AF5A 1P8KZ 4YITA 2XE0B 1JVAA 3HYJA 1G9ZA 3MISA 2VBNA 4D6OA 4YHXA 4AADA 4UN7A 4YISA 4UNAA 5AKMA 3MXAA 2O7MA 4UT0A 1N3FA
chains in the Genus database with same CATH topology
5AKFA 3E54A 4UN9A 1T9JA 2CW7A 3HYIA 2DCHX 5A78A 5AKNA 2VBOA 4AABA 1G9YA 5E5OA 1U0CA 1UM2A 2VBJA 5A72A 3OOLA 3C0XA 5AK9A 5A0MA 2CW8A 4UN8G 3KO2A 3MIPA 3MX9A 2EX5A 2QOJZ 5A77A 2VBOB 4AAEA 2AB5A 2VBLB 2VBJB 1U0DA 3R7PA 1T9IA 2VS7A 5A0MB 1DFAA 3OORA 2VBLA 4UN7G 1N3EA 1VDEA 3MXBA 2VS8A 4AQUA 4EFJA 1R7MA 5A74A 4LQ0A 2FLDA 4AAGA 4Z1ZA 4LOXA 3QQYA 1DQ3A 3MXBB 1LWTA 3C0WA 4Z1XA 5E5SA 3FD2A 1EF0A 1LWSA 5E63A 4AAFA 4UN9G 4AQXA 3EH8A 2I3QA 2XE0A 5E67A 4UNBA 5A0WA 1MOWA 4UNCA 4D6NA 2I3PA 4UN8A 4Z20A 1B24A 2VBNB 1BP7A 1M5XA 3UVFA 1AF5A 1P8KZ 4YITA 2XE0B 1JVAA 3HYJA 1G9ZA 3MISA 2VBNA 4D6OA 4YHXA 4AADA 4UN7A 4YISA 4UNAA 5AKMA 3MXAA 2O7MA 4UT0A 1N3FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AKF A;  3E54 A;  4UN9 A;  1T9J A;  2CW7 A;  3HYI A;  2DCH X;  5A78 A;  5AKN A;  2VBO A;  4AAB A;  1G9Y A;  5E5O A;  1U0C A;  1UM2 A;  2VBJ A;  5A72 A;  3OOL A;  3C0X A;  5AK9 A;  5A0M A;  2CW8 A;  4UN8 G;  3KO2 A;  3MIP A;  3MX9 A;  2EX5 A;  2QOJ Z;  5A77 A;  2VBO B;  4AAE A;  2AB5 A;  2VBL B;  2VBJ B;  1U0D A;  3R7P A;  1T9I A;  2VS7 A;  5A0M B;  1DFA A;  3OOR A;  2VBL A;  4UN7 G;  1N3E A;  1VDE A;  3MXB A;  2VS8 A;  4AQU A;  4EFJ A;  1R7M A;  5A74 A;  4LQ0 A;  2FLD A;  4AAG A;  4Z1Z A;  4LOX A;  3QQY A;  1DQ3 A;  3MXB B;  1LWT A;  3C0W A;  4Z1X A;  5E5S A;  3FD2 A;  1EF0 A;  1LWS A;  5E63 A;  4AAF A;  4UN9 G;  4AQX A;  3EH8 A;  2I3Q A;  2XE0 A;  5E67 A;  4UNB A;  5A0W A;  1MOW A;  4UNC A;  4D6N A;  2I3P A;  4UN8 A;  4Z20 A;  1B24 A;  2VBN B;  1BP7 A;  1M5X A;  3UVF A;  1AF5 A;  1P8K Z;  4YIT A;  2XE0 B;  1JVA A;  3HYJ A;  1G9Z A;  3MIS A;  2VBN A;  4D6O A;  4YHX A;  4AAD A;  4UN7 A;  4YIS A;  4UNA A;  5AKM A;  3MXA A;  2O7M A;  4UT0 A;  1N3F A; 
#chains in the Genus database with same CATH topology
 5AKF A;  3E54 A;  4UN9 A;  1T9J A;  2CW7 A;  3HYI A;  2DCH X;  5A78 A;  5AKN A;  2VBO A;  4AAB A;  1G9Y A;  5E5O A;  1U0C A;  1UM2 A;  2VBJ A;  5A72 A;  3OOL A;  3C0X A;  4KZS A;  5AK9 A;  5A0M A;  2CW8 A;  4UN8 G;  3KO2 A;  3MIP A;  3MX9 A;  2EX5 A;  2QOJ Z;  5A77 A;  2VBO B;  4AAE A;  2AB5 A;  2VBL B;  2VBJ B;  1U0D A;  3R7P A;  1T9I A;  2VS7 A;  5A0M B;  1DFA A;  3OOR A;  2VBL A;  4UN7 G;  1N3E A;  1VDE A;  3MXB A;  2VS8 A;  4AQU A;  4EFJ A;  1R7M A;  5A74 A;  4LQ0 A;  2FLD A;  4AAG A;  4Z1Z A;  4LOX A;  3QQY A;  1DQ3 A;  3MXB B;  1LWT A;  3C0W A;  4Z1X A;  5E5S A;  3FD2 A;  1EF0 A;  1LWS A;  5E63 A;  4AAF A;  4UN9 G;  4AQX A;  3EH8 A;  2I3Q A;  2XE0 A;  5E67 A;  4UNB A;  5A0W A;  1MOW A;  4UNC A;  4D6N A;  2I3P A;  4UN8 A;  4Z20 A;  1B24 A;  2VBN B;  1BP7 A;  2F4L A;  1M5X A;  3UVF A;  1AF5 A;  1P8K Z;  4YIT A;  2XE0 B;  1JVA A;  3HYJ A;  1G9Z A;  3MIS A;  2VBN A;  4D6O A;  4YHX A;  4AAD A;  4UN7 A;  4YIS A;  4UNA A;  5AKM A;  3MXA A;  2O7M A;  4UT0 A;  1N3F A; 
#chains in the Genus database with same CATH homology
 5AKF A;  3E54 A;  4UN9 A;  1T9J A;  2CW7 A;  3HYI A;  2DCH X;  5A78 A;  5AKN A;  2VBO A;  4AAB A;  1G9Y A;  5E5O A;  1U0C A;  1UM2 A;  2VBJ A;  5A72 A;  3OOL A;  3C0X A;  5AK9 A;  5A0M A;  2CW8 A;  4UN8 G;  3KO2 A;  3MIP A;  3MX9 A;  2EX5 A;  2QOJ Z;  5A77 A;  2VBO B;  4AAE A;  2AB5 A;  2VBL B;  2VBJ B;  1U0D A;  3R7P A;  1T9I A;  2VS7 A;  5A0M B;  1DFA A;  3OOR A;  2VBL A;  4UN7 G;  1N3E A;  1VDE A;  3MXB A;  2VS8 A;  4AQU A;  4EFJ A;  1R7M A;  5A74 A;  4LQ0 A;  2FLD A;  4AAG A;  4Z1Z A;  4LOX A;  3QQY A;  1DQ3 A;  3MXB B;  1LWT A;  3C0W A;  4Z1X A;  5E5S A;  3FD2 A;  1EF0 A;  1LWS A;  5E63 A;  4AAF A;  4UN9 G;  4AQX A;  3EH8 A;  2I3Q A;  2XE0 A;  5E67 A;  4UNB A;  5A0W A;  1MOW A;  4UNC A;  4D6N A;  2I3P A;  4UN8 A;  4Z20 A;  1B24 A;  2VBN B;  1BP7 A;  1M5X A;  3UVF A;  1AF5 A;  1P8K Z;  4YIT A;  2XE0 B;  1JVA A;  3HYJ A;  1G9Z A;  3MIS A;  2VBN A;  4D6O A;  4YHX A;  4AAD A;  4UN7 A;  4YIS A;  4UNA A;  5AKM A;  3MXA A;  2O7M A;  4UT0 A;  1N3F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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