4UN9 | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	184
structure length	184
Chain Sequence	NENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSHLNPLPP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__231031541681338__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__231031541681338__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/4UN9/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__231031541681338__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"231031541681338","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/4UN9/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__231031541681338__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/dna
source organism	Desulfurococcus mobilis
publication title	Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease. pubmed doi rcsb
molecule keywords	HOMING ENDONUCLEASE I-DMOI
total genus	57
structure length	184
sequence length	184
chains with identical sequence	D
ec nomenclature	ec 3.1.-.-:
pdb deposition date	2014-05-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF14528	LAGLIDADG_3	LAGLIDADG-like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.28.10	Alpha Beta	Roll	Endonuclease I-creI	Homing endonucleases	4un9A01
3.10.28.10	Alpha Beta	Roll	Endonuclease I-creI	Homing endonucleases	4un9A02

3R7PA 4Z20A 1DQ3A 4AADA 3EH8A 3MXAA 1UM2A 3HYIA 1N3FA 2VBOB 2FLDA 3QQYA 1P8KZ 3OORA 2O7MA 4UN7G 3OOLA 1BP7A 4YITA 4UNCA 2VS7A 1MOWA 3MX9A 1U0DA 2CW7A 5A77A 4UN9G 4Z1ZA 5A72A 4UT0A 5A78A 4UNBA 4EFJA 5E63A 4UN8G 1EF0A 2EX5A 2QOJZ 1LWTA 3KO2A 2VBNB 3E54A 4UN9A 3MISA 4AQXA 3MIPA 3C0WA 2I3PA 5E5SA 4D6OA 1M5XA 4D6NA 3C0XA 2CW8A 5A0MA 1JVAA 1G9ZA 2VBNA 2I3QA 2DCHX 5A74A 4AABA 4LQ0A 4AQUA 4UN7A 2VBJA 2XE0B 5E5OA 5A0MB 2VBLB 1U0CA 5E67A 5AK9A 5AKNA 3MXBB 2AB5A 2VBJB 1LWSA 5AKFA 2XE0A 1VDEA 4UN8A 1T9JA 4YHXA 2VBLA 3HYJA 3MXBA 4AAFA 4AAGA 5A0WA 1AF5A 4UNAA 2VS8A 1DFAA 4AAEA 4YISA 5AKMA 3FD2A 1B24A 4LOXA 1R7MA 1G9YA 2VBOA 1N3EA 1T9IA 3UVFA 4Z1XA
chains in the Genus database with same CATH superfamily

3R7PA 4Z20A 1DQ3A 4AADA 3EH8A 3MXAA 1UM2A 3HYIA 1N3FA 2VBOB 2FLDA 3QQYA 1P8KZ 3OORA 2O7MA 4UN7G 3OOLA 1BP7A 4YITA 4UNCA 2VS7A 1MOWA 3MX9A 1U0DA 2CW7A 5A77A 4UN9G 4Z1ZA 5A72A 4UT0A 5A78A 4UNBA 4EFJA 5E63A 4UN8G 1EF0A 2EX5A 2QOJZ 1LWTA 3KO2A 2VBNB 3E54A 4UN9A 3MISA 4AQXA 3MIPA 3C0WA 2I3PA 5E5SA 4D6OA 1M5XA 4D6NA 3C0XA 2CW8A 5A0MA 1JVAA 1G9ZA 2VBNA 2I3QA 2DCHX 5A74A 4AABA 4LQ0A 4KZSA 4UN7A 4AQUA 2VBJA 2XE0B 5E5OA 5A0MB 2VBLB 1U0CA 5E67A 5AK9A 5AKNA 3MXBB 2AB5A 2VBJB 1LWSA 5AKFA 2XE0A 1VDEA 4UN8A 1T9JA 4YHXA 2VBLA 3HYJA 2F4LA 3MXBA 4AAFA 4AAGA 5A0WA 1AF5A 4UNAA 2VS8A 1DFAA 4AAEA 4YISA 5AKMA 3FD2A 1B24A 4LOXA 1R7MA 1G9YA 2VBOA 1N3EA 1T9IA 3UVFA 4Z1XA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3R7P A;  4Z20 A;  1DQ3 A;  4AAD A;  3EH8 A;  3MXA A;  1UM2 A;  3HYI A;  1N3F A;  2VBO B;  2FLD A;  3QQY A;  1P8K Z;  3OOR A;  2O7M A;  4UN7 G;  3OOL A;  1BP7 A;  4YIT A;  4UNC A;  2VS7 A;  1MOW A;  3MX9 A;  1U0D A;  2CW7 A;  5A77 A;  4UN9 G;  4Z1Z A;  5A72 A;  4UT0 A;  5A78 A;  4UNB A;  4EFJ A;  5E63 A;  4UN8 G;  1EF0 A;  2EX5 A;  2QOJ Z;  1LWT A;  3KO2 A;  2VBN B;  3E54 A;  4UN9 A;  3MIS A;  4AQX A;  3MIP A;  3C0W A;  2I3P A;  5E5S A;  4D6O A;  1M5X A;  4D6N A;  3C0X A;  2CW8 A;  5A0M A;  1JVA A;  1G9Z A;  2VBN A;  2I3Q A;  2DCH X;  5A74 A;  4AAB A;  4LQ0 A;  4AQU A;  4UN7 A;  2VBJ A;  2XE0 B;  5E5O A;  5A0M B;  2VBL B;  1U0C A;  5E67 A;  5AK9 A;  5AKN A;  3MXB B;  2AB5 A;  2VBJ B;  1LWS A;  5AKF A;  2XE0 A;  1VDE A;  4UN8 A;  1T9J A;  4YHX A;  2VBL A;  3HYJ A;  3MXB A;  4AAF A;  4AAG A;  5A0W A;  1AF5 A;  4UNA A;  2VS8 A;  1DFA A;  4AAE A;  4YIS A;  5AKM A;  3FD2 A;  1B24 A;  4LOX A;  1R7M A;  1G9Y A;  2VBO A;  1N3E A;  1T9I A;  3UVF A;  4Z1X A; 
#chains in the Genus database with same CATH topology
 3R7P A;  4Z20 A;  1DQ3 A;  4AAD A;  3EH8 A;  3MXA A;  1UM2 A;  3HYI A;  1N3F A;  2VBO B;  2FLD A;  3QQY A;  1P8K Z;  3OOR A;  2O7M A;  4UN7 G;  3OOL A;  1BP7 A;  4YIT A;  4UNC A;  2VS7 A;  1MOW A;  3MX9 A;  1U0D A;  2CW7 A;  5A77 A;  4UN9 G;  4Z1Z A;  5A72 A;  4UT0 A;  5A78 A;  4UNB A;  4EFJ A;  5E63 A;  4UN8 G;  1EF0 A;  2EX5 A;  2QOJ Z;  1LWT A;  3KO2 A;  2VBN B;  3E54 A;  4UN9 A;  3MIS A;  4AQX A;  3MIP A;  3C0W A;  2I3P A;  5E5S A;  4D6O A;  1M5X A;  4D6N A;  3C0X A;  2CW8 A;  5A0M A;  1JVA A;  1G9Z A;  2VBN A;  2I3Q A;  2DCH X;  5A74 A;  4AAB A;  4LQ0 A;  4KZS A;  4UN7 A;  4AQU A;  2VBJ A;  2XE0 B;  5E5O A;  5A0M B;  2VBL B;  1U0C A;  5E67 A;  5AK9 A;  5AKN A;  3MXB B;  2AB5 A;  2VBJ B;  1LWS A;  5AKF A;  2XE0 A;  1VDE A;  4UN8 A;  1T9J A;  4YHX A;  2VBL A;  3HYJ A;  2F4L A;  3MXB A;  4AAF A;  4AAG A;  5A0W A;  1AF5 A;  4UNA A;  2VS8 A;  1DFA A;  4AAE A;  4YIS A;  5AKM A;  3FD2 A;  1B24 A;  4LOX A;  1R7M A;  1G9Y A;  2VBO A;  1N3E A;  1T9I A;  3UVF A;  4Z1X A; 
#chains in the Genus database with same CATH homology
 3R7P A;  4Z20 A;  1DQ3 A;  4AAD A;  3EH8 A;  3MXA A;  1UM2 A;  3HYI A;  1N3F A;  2VBO B;  2FLD A;  3QQY A;  1P8K Z;  3OOR A;  2O7M A;  4UN7 G;  3OOL A;  1BP7 A;  4YIT A;  4UNC A;  2VS7 A;  1MOW A;  3MX9 A;  1U0D A;  2CW7 A;  5A77 A;  4UN9 G;  4Z1Z A;  5A72 A;  4UT0 A;  5A78 A;  4UNB A;  4EFJ A;  5E63 A;  4UN8 G;  1EF0 A;  2EX5 A;  2QOJ Z;  1LWT A;  3KO2 A;  2VBN B;  3E54 A;  4UN9 A;  3MIS A;  4AQX A;  3MIP A;  3C0W A;  2I3P A;  5E5S A;  4D6O A;  1M5X A;  4D6N A;  3C0X A;  2CW8 A;  5A0M A;  1JVA A;  1G9Z A;  2VBN A;  2I3Q A;  2DCH X;  5A74 A;  4AAB A;  4LQ0 A;  4AQU A;  4UN7 A;  2VBJ A;  2XE0 B;  5E5O A;  5A0M B;  2VBL B;  1U0C A;  5E67 A;  5AK9 A;  5AKN A;  3MXB B;  2AB5 A;  2VBJ B;  1LWS A;  5AKF A;  2XE0 A;  1VDE A;  4UN8 A;  1T9J A;  4YHX A;  2VBL A;  3HYJ A;  3MXB A;  4AAF A;  4AAG A;  5A0W A;  1AF5 A;  4UNA A;  2VS8 A;  1DFA A;  4AAE A;  4YIS A;  5AKM A;  3FD2 A;  1B24 A;  4LOX A;  1R7M A;  1G9Y A;  2VBO A;  1N3E A;  1T9I A;  3UVF A;  4Z1X A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4UN9A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations