4UNAA

The crystal structure of i-dmoi in complex with its target dna at 2 days incubation in 5mm mn (state 4)
Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
184
structure length
184
Chain Sequence
NENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSHLNPLPP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (5-21)AH3 (85-97)S1 (22-28)S2 (34-42)TII1 (29-32)S4 (77-83)TIV1 (30-33)TIV2 (74-77)EMPTYAH2 (45-63)S3 (69-74)3H1 (98-100)AH4 (103-117)S5 (125-129)TI1 (119-122)3H2 (167-169)S7 (160-165)TVIII1 (122-125)TI2 (155-158)TIV3 (129-132)S6 (149-155)TI3 (156-159)AH6 (170-178)AH5 (132-144)Updating...
connected with : NaN
molecule tags Hydrolase/dna
source organism Desulfurococcus mobilis
publication title Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
pubmed doi rcsb
molecule keywords HOMING ENDONUCLEASE I-DMOI
total genus 56
structure length 184
sequence length 184
chains with identical sequence D, G
ec nomenclature ec 3.1.-.-:
pdb deposition date 2014-05-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14528 LAGLIDADG_3 LAGLIDADG-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4unaA01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4unaA02
4Z1XA 2VBOA 5E5SA 5AKMA 2AB5A 5AKNA 3C0WA 3OORA 1T9JA 1U0DA 5A0MB 2VBJB 5A78A 1LWSA 5E63A 3MIPA 5A0MA 3E54A 4UN8G 2VBJA 3HYIA 1G9ZA 4UN9G 4Z20A 1AF5A 2I3PA 1MOWA 1B24A 5E67A 2VBNB 2XE0B 4AABA 4AQUA 4YISA 2I3QA 4LOXA 4D6OA 3OOLA 2VBNA 2XE0A 5A74A 2QOJZ 3MX9A 3FD2A 4AAGA 4AQXA 2CW8A 4AAFA 3UVFA 4AADA 1M5XA 4UNCA 3HYJA 3MISA 3R7PA 4AAEA 3QQYA 5E5OA 1DQ3A 5A72A 1N3EA 4YITA 1JVAA 1DFAA 4UN7A 1BP7A 1T9IA 4EFJA 5A77A 2VBLB 5AKFA 3MXBB 1LWTA 1N3FA 2EX5A 3C0XA 2VBLA 3MXBA 4Z1ZA 4UNBA 2DCHX 1G9YA 1UM2A 5A0WA 4D6NA 5AK9A 4UN8A 2FLDA 3MXAA 3KO2A 2CW7A 2VS7A 4LQ0A 1EF0A 2O7MA 1U0CA 1R7MA 4YHXA 2VS8A 3EH8A 4UN9A 1VDEA 4UT0A 4UN7G 2VBOB 4UNAA 1P8KZ
chains in the Genus database with same CATH superfamily
2F4LA 4Z1XA 5E5SA 2VBOA 5AKMA 2AB5A 5AKNA 3C0WA 3OORA 1T9JA 1U0DA 5A0MB 2VBJB 5A78A 1LWSA 5E63A 3MIPA 5A0MA 3E54A 4UN8G 2VBJA 3HYIA 4KZSA 1G9ZA 4UN9G 4Z20A 1AF5A 2I3PA 1MOWA 1B24A 5E67A 2VBNB 2XE0B 4AABA 4AQUA 4YISA 2I3QA 4LOXA 4D6OA 3OOLA 2VBNA 2XE0A 5A74A 2QOJZ 3MX9A 3FD2A 4AAGA 4AQXA 2CW8A 4AAFA 3UVFA 4AADA 1M5XA 4UNCA 3HYJA 3MISA 3R7PA 4AAEA 3QQYA 5E5OA 1DQ3A 5A72A 1N3EA 4YITA 1JVAA 1DFAA 4UN7A 1BP7A 1T9IA 4EFJA 5A77A 2VBLB 5AKFA 3MXBB 1LWTA 1N3FA 2EX5A 3C0XA 2VBLA 3MXBA 4Z1ZA 4UNBA 2DCHX 1G9YA 1UM2A 5A0WA 4D6NA 5AK9A 4UN8A 2FLDA 3MXAA 3KO2A 2CW7A 2VS7A 4LQ0A 1EF0A 2O7MA 1U0CA 1R7MA 4YHXA 2VS8A 3EH8A 4UN9A 1VDEA 4UT0A 4UN7G 2VBOB 4UNAA 1P8KZ
chains in the Genus database with same CATH topology
4Z1XA 2VBOA 5E5SA 5AKMA 2AB5A 5AKNA 3C0WA 3OORA 1T9JA 1U0DA 5A0MB 2VBJB 5A78A 1LWSA 5E63A 3MIPA 5A0MA 3E54A 4UN8G 2VBJA 3HYIA 1G9ZA 4UN9G 4Z20A 1AF5A 2I3PA 1MOWA 1B24A 5E67A 2VBNB 2XE0B 4AABA 4AQUA 4YISA 2I3QA 4LOXA 4D6OA 3OOLA 2VBNA 2XE0A 5A74A 2QOJZ 3MX9A 3FD2A 4AAGA 4AQXA 2CW8A 4AAFA 3UVFA 4AADA 1M5XA 4UNCA 3HYJA 3MISA 3R7PA 4AAEA 3QQYA 5E5OA 1DQ3A 5A72A 1N3EA 4YITA 1JVAA 1DFAA 4UN7A 1BP7A 1T9IA 4EFJA 5A77A 2VBLB 5AKFA 3MXBB 1LWTA 1N3FA 2EX5A 3C0XA 2VBLA 3MXBA 4Z1ZA 4UNBA 2DCHX 1G9YA 1UM2A 5A0WA 4D6NA 5AK9A 4UN8A 2FLDA 3MXAA 3KO2A 2CW7A 2VS7A 4LQ0A 1EF0A 2O7MA 1U0CA 1R7MA 4YHXA 2VS8A 3EH8A 4UN9A 1VDEA 4UT0A 4UN7G 2VBOB 4UNAA 1P8KZ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Z1X A;  2VBO A;  5E5S A;  5AKM A;  2AB5 A;  5AKN A;  3C0W A;  3OOR A;  1T9J A;  1U0D A;  5A0M B;  2VBJ B;  5A78 A;  1LWS A;  5E63 A;  3MIP A;  5A0M A;  3E54 A;  4UN8 G;  2VBJ A;  3HYI A;  1G9Z A;  4UN9 G;  4Z20 A;  1AF5 A;  2I3P A;  1MOW A;  1B24 A;  5E67 A;  2VBN B;  2XE0 B;  4AAB A;  4AQU A;  4YIS A;  2I3Q A;  4LOX A;  4D6O A;  3OOL A;  2VBN A;  2XE0 A;  5A74 A;  2QOJ Z;  3MX9 A;  3FD2 A;  4AAG A;  4AQX A;  2CW8 A;  4AAF A;  3UVF A;  4AAD A;  1M5X A;  4UNC A;  3HYJ A;  3MIS A;  3R7P A;  4AAE A;  3QQY A;  5E5O A;  1DQ3 A;  5A72 A;  1N3E A;  4YIT A;  1JVA A;  1DFA A;  4UN7 A;  1BP7 A;  1T9I A;  4EFJ A;  5A77 A;  2VBL B;  5AKF A;  3MXB B;  1LWT A;  1N3F A;  2EX5 A;  3C0X A;  2VBL A;  3MXB A;  4Z1Z A;  4UNB A;  2DCH X;  1G9Y A;  1UM2 A;  5A0W A;  4D6N A;  5AK9 A;  4UN8 A;  2FLD A;  3MXA A;  3KO2 A;  2CW7 A;  2VS7 A;  4LQ0 A;  1EF0 A;  2O7M A;  1U0C A;  1R7M A;  4YHX A;  2VS8 A;  3EH8 A;  4UN9 A;  1VDE A;  4UT0 A;  4UN7 G;  2VBO B;  4UNA A;  1P8K Z; 
#chains in the Genus database with same CATH topology
 2F4L A;  4Z1X A;  5E5S A;  2VBO A;  5AKM A;  2AB5 A;  5AKN A;  3C0W A;  3OOR A;  1T9J A;  1U0D A;  5A0M B;  2VBJ B;  5A78 A;  1LWS A;  5E63 A;  3MIP A;  5A0M A;  3E54 A;  4UN8 G;  2VBJ A;  3HYI A;  4KZS A;  1G9Z A;  4UN9 G;  4Z20 A;  1AF5 A;  2I3P A;  1MOW A;  1B24 A;  5E67 A;  2VBN B;  2XE0 B;  4AAB A;  4AQU A;  4YIS A;  2I3Q A;  4LOX A;  4D6O A;  3OOL A;  2VBN A;  2XE0 A;  5A74 A;  2QOJ Z;  3MX9 A;  3FD2 A;  4AAG A;  4AQX A;  2CW8 A;  4AAF A;  3UVF A;  4AAD A;  1M5X A;  4UNC A;  3HYJ A;  3MIS A;  3R7P A;  4AAE A;  3QQY A;  5E5O A;  1DQ3 A;  5A72 A;  1N3E A;  4YIT A;  1JVA A;  1DFA A;  4UN7 A;  1BP7 A;  1T9I A;  4EFJ A;  5A77 A;  2VBL B;  5AKF A;  3MXB B;  1LWT A;  1N3F A;  2EX5 A;  3C0X A;  2VBL A;  3MXB A;  4Z1Z A;  4UNB A;  2DCH X;  1G9Y A;  1UM2 A;  5A0W A;  4D6N A;  5AK9 A;  4UN8 A;  2FLD A;  3MXA A;  3KO2 A;  2CW7 A;  2VS7 A;  4LQ0 A;  1EF0 A;  2O7M A;  1U0C A;  1R7M A;  4YHX A;  2VS8 A;  3EH8 A;  4UN9 A;  1VDE A;  4UT0 A;  4UN7 G;  2VBO B;  4UNA A;  1P8K Z; 
#chains in the Genus database with same CATH homology
 4Z1X A;  2VBO A;  5E5S A;  5AKM A;  2AB5 A;  5AKN A;  3C0W A;  3OOR A;  1T9J A;  1U0D A;  5A0M B;  2VBJ B;  5A78 A;  1LWS A;  5E63 A;  3MIP A;  5A0M A;  3E54 A;  4UN8 G;  2VBJ A;  3HYI A;  1G9Z A;  4UN9 G;  4Z20 A;  1AF5 A;  2I3P A;  1MOW A;  1B24 A;  5E67 A;  2VBN B;  2XE0 B;  4AAB A;  4AQU A;  4YIS A;  2I3Q A;  4LOX A;  4D6O A;  3OOL A;  2VBN A;  2XE0 A;  5A74 A;  2QOJ Z;  3MX9 A;  3FD2 A;  4AAG A;  4AQX A;  2CW8 A;  4AAF A;  3UVF A;  4AAD A;  1M5X A;  4UNC A;  3HYJ A;  3MIS A;  3R7P A;  4AAE A;  3QQY A;  5E5O A;  1DQ3 A;  5A72 A;  1N3E A;  4YIT A;  1JVA A;  1DFA A;  4UN7 A;  1BP7 A;  1T9I A;  4EFJ A;  5A77 A;  2VBL B;  5AKF A;  3MXB B;  1LWT A;  1N3F A;  2EX5 A;  3C0X A;  2VBL A;  3MXB A;  4Z1Z A;  4UNB A;  2DCH X;  1G9Y A;  1UM2 A;  5A0W A;  4D6N A;  5AK9 A;  4UN8 A;  2FLD A;  3MXA A;  3KO2 A;  2CW7 A;  2VS7 A;  4LQ0 A;  1EF0 A;  2O7M A;  1U0C A;  1R7M A;  4YHX A;  2VS8 A;  3EH8 A;  4UN9 A;  1VDE A;  4UT0 A;  4UN7 G;  2VBO B;  4UNA A;  1P8K Z; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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