4UT0A

The crystal structure of i-dmoi in complex with its target dna at 10 days incubation in 5mm mn (state 7)
Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
183
structure length
183
Chain Sequence
ENVSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSSHLNPLPP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (7-21)AH3 (85-96)TIV2 (30-33)TIV1 (29-32)S2 (34-42)S4 (78-83)EMPTYS3 (69-73)TI1 (74-77)3H1 (98-100)TI3 (177-180)AH4 (103-117)TVIII1 (122-125)S7 (160-165)TIV3 (119-122)TI2 (156-159)S5 (125-129)S6 (149-155)TIV4 (155-158)3H2 (167-169)AH6 (170-177)AH2 (45-63)AH5 (132-145)TVIII2 (153-156)S1 (22-28)Updating...
connected with : NaN
molecule tags Hydrolase/dna
source organism Desulfurococcus mobilis
publication title Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease.
pubmed doi rcsb
molecule keywords HOMING ENDONUCLEASE I-DMOI
total genus 56
structure length 183
sequence length 183
chains with identical sequence F, K
ec nomenclature ec 3.1.-.-:
pdb deposition date 2014-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14528 LAGLIDADG_3 LAGLIDADG-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4ut0A01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4ut0A02
1DFAA 4UN9A 5AKNA 3HYJA 1U0CA 4YISA 2DCHX 5E63A 1P8KZ 1UM2A 2I3QA 5A0WA 3MX9A 5A72A 2O7MA 4UN8A 2XE0B 3MXBB 2I3PA 1N3EA 1G9ZA 3MXBA 1T9JA 4UN7A 1BP7A 4UT0A 3EH8A 4LOXA 3R7PA 1T9IA 3HYIA 2QOJZ 2CW7A 4UN9G 5AK9A 2VBOB 2VBJB 1EF0A 4YITA 3QQYA 4UNCA 4D6OA 4YHXA 5AKMA 3FD2A 4EFJA 2VBJA 2VBOA 4AADA 4AAFA 1G9YA 4UNAA 4LQ0A 1VDEA 4Z1ZA 1DQ3A 1AF5A 1B24A 3MISA 2VBNA 2FLDA 4UN7G 4UNBA 5A77A 1M5XA 2CW8A 2VBLB 4AABA 2AB5A 1JVAA 4AAEA 1LWSA 3OORA 5A0MB 4AQXA 4Z20A 4UN8G 4D6NA 5AKFA 4Z1XA 2VBNB 3MXAA 1U0DA 1N3FA 2VBLA 1MOWA 2EX5A 4AAGA 5A78A 2VS8A 1R7MA 5A0MA 2VS7A 1LWTA 5E67A 3C0XA 3OOLA 5E5OA 3E54A 4AQUA 3MIPA 3KO2A 2XE0A 5A74A 5E5SA 3UVFA 3C0WA
chains in the Genus database with same CATH superfamily
1DFAA 4UN9A 5AKNA 3HYJA 1U0CA 4YISA 2DCHX 5E63A 1P8KZ 1UM2A 2I3QA 5A0WA 3MX9A 5A72A 2O7MA 4UN8A 2XE0B 3MXBB 2I3PA 1N3EA 1G9ZA 3MXBA 1T9JA 4UN7A 1BP7A 4UT0A 3EH8A 4LOXA 3R7PA 1T9IA 3HYIA 2QOJZ 2CW7A 4UN9G 5AK9A 2VBOB 2VBJB 1EF0A 4YITA 3QQYA 4UNCA 4D6OA 4YHXA 5AKMA 3FD2A 4EFJA 2VBJA 2VBOA 4AADA 4AAFA 1G9YA 4UNAA 4LQ0A 1VDEA 4Z1ZA 4KZSA 1DQ3A 1AF5A 1B24A 3MISA 2VBNA 2FLDA 4UN7G 4UNBA 5A77A 1M5XA 2CW8A 2VBLB 4AABA 2AB5A 1JVAA 4AAEA 1LWSA 3OORA 5A0MB 4AQXA 4Z20A 4UN8G 4D6NA 5AKFA 4Z1XA 2VBNB 3MXAA 1U0DA 1N3FA 2VBLA 1MOWA 2EX5A 4AAGA 5A78A 2VS8A 1R7MA 2F4LA 5A0MA 2VS7A 5E67A 3C0XA 1LWTA 3OOLA 5E5OA 3E54A 4AQUA 3MIPA 3KO2A 2XE0A 5A74A 5E5SA 3UVFA 3C0WA
chains in the Genus database with same CATH topology
1DFAA 4UN9A 5AKNA 3HYJA 1U0CA 4YISA 2DCHX 5E63A 1P8KZ 1UM2A 2I3QA 5A0WA 3MX9A 5A72A 2O7MA 4UN8A 2XE0B 3MXBB 2I3PA 1N3EA 1G9ZA 3MXBA 1T9JA 4UN7A 1BP7A 4UT0A 3EH8A 4LOXA 3R7PA 1T9IA 3HYIA 2QOJZ 2CW7A 4UN9G 5AK9A 2VBOB 2VBJB 1EF0A 4YITA 3QQYA 4UNCA 4D6OA 4YHXA 5AKMA 3FD2A 4EFJA 2VBJA 2VBOA 4AADA 4AAFA 1G9YA 4UNAA 4LQ0A 1VDEA 4Z1ZA 1DQ3A 1AF5A 1B24A 3MISA 2VBNA 2FLDA 4UN7G 4UNBA 5A77A 1M5XA 2CW8A 2VBLB 4AABA 2AB5A 1JVAA 4AAEA 1LWSA 3OORA 5A0MB 4AQXA 4Z20A 4UN8G 4D6NA 5AKFA 4Z1XA 2VBNB 3MXAA 1U0DA 1N3FA 2VBLA 1MOWA 2EX5A 4AAGA 5A78A 2VS8A 1R7MA 5A0MA 2VS7A 1LWTA 5E67A 3C0XA 3OOLA 5E5OA 3E54A 4AQUA 3MIPA 3KO2A 2XE0A 5A74A 5E5SA 3UVFA 3C0WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DFA A;  4UN9 A;  5AKN A;  3HYJ A;  1U0C A;  4YIS A;  2DCH X;  5E63 A;  1P8K Z;  1UM2 A;  2I3Q A;  5A0W A;  3MX9 A;  5A72 A;  2O7M A;  4UN8 A;  2XE0 B;  3MXB B;  2I3P A;  1N3E A;  1G9Z A;  3MXB A;  1T9J A;  4UN7 A;  1BP7 A;  4UT0 A;  3EH8 A;  4LOX A;  3R7P A;  1T9I A;  3HYI A;  2QOJ Z;  2CW7 A;  4UN9 G;  5AK9 A;  2VBO B;  2VBJ B;  1EF0 A;  4YIT A;  3QQY A;  4UNC A;  4D6O A;  4YHX A;  5AKM A;  3FD2 A;  4EFJ A;  2VBJ A;  2VBO A;  4AAD A;  4AAF A;  1G9Y A;  4UNA A;  4LQ0 A;  1VDE A;  4Z1Z A;  1DQ3 A;  1AF5 A;  1B24 A;  3MIS A;  2VBN A;  2FLD A;  4UN7 G;  4UNB A;  5A77 A;  1M5X A;  2CW8 A;  2VBL B;  4AAB A;  2AB5 A;  1JVA A;  4AAE A;  1LWS A;  3OOR A;  5A0M B;  4AQX A;  4Z20 A;  4UN8 G;  4D6N A;  5AKF A;  4Z1X A;  2VBN B;  3MXA A;  1U0D A;  1N3F A;  2VBL A;  1MOW A;  2EX5 A;  4AAG A;  5A78 A;  2VS8 A;  1R7M A;  5A0M A;  2VS7 A;  1LWT A;  5E67 A;  3C0X A;  3OOL A;  5E5O A;  3E54 A;  4AQU A;  3MIP A;  3KO2 A;  2XE0 A;  5A74 A;  5E5S A;  3UVF A;  3C0W A; 
#chains in the Genus database with same CATH topology
 1DFA A;  4UN9 A;  5AKN A;  3HYJ A;  1U0C A;  4YIS A;  2DCH X;  5E63 A;  1P8K Z;  1UM2 A;  2I3Q A;  5A0W A;  3MX9 A;  5A72 A;  2O7M A;  4UN8 A;  2XE0 B;  3MXB B;  2I3P A;  1N3E A;  1G9Z A;  3MXB A;  1T9J A;  4UN7 A;  1BP7 A;  4UT0 A;  3EH8 A;  4LOX A;  3R7P A;  1T9I A;  3HYI A;  2QOJ Z;  2CW7 A;  4UN9 G;  5AK9 A;  2VBO B;  2VBJ B;  1EF0 A;  4YIT A;  3QQY A;  4UNC A;  4D6O A;  4YHX A;  5AKM A;  3FD2 A;  4EFJ A;  2VBJ A;  2VBO A;  4AAD A;  4AAF A;  1G9Y A;  4UNA A;  4LQ0 A;  1VDE A;  4Z1Z A;  4KZS A;  1DQ3 A;  1AF5 A;  1B24 A;  3MIS A;  2VBN A;  2FLD A;  4UN7 G;  4UNB A;  5A77 A;  1M5X A;  2CW8 A;  2VBL B;  4AAB A;  2AB5 A;  1JVA A;  4AAE A;  1LWS A;  3OOR A;  5A0M B;  4AQX A;  4Z20 A;  4UN8 G;  4D6N A;  5AKF A;  4Z1X A;  2VBN B;  3MXA A;  1U0D A;  1N3F A;  2VBL A;  1MOW A;  2EX5 A;  4AAG A;  5A78 A;  2VS8 A;  1R7M A;  2F4L A;  5A0M A;  2VS7 A;  5E67 A;  3C0X A;  1LWT A;  3OOL A;  5E5O A;  3E54 A;  4AQU A;  3MIP A;  3KO2 A;  2XE0 A;  5A74 A;  5E5S A;  3UVF A;  3C0W A; 
#chains in the Genus database with same CATH homology
 1DFA A;  4UN9 A;  5AKN A;  3HYJ A;  1U0C A;  4YIS A;  2DCH X;  5E63 A;  1P8K Z;  1UM2 A;  2I3Q A;  5A0W A;  3MX9 A;  5A72 A;  2O7M A;  4UN8 A;  2XE0 B;  3MXB B;  2I3P A;  1N3E A;  1G9Z A;  3MXB A;  1T9J A;  4UN7 A;  1BP7 A;  4UT0 A;  3EH8 A;  4LOX A;  3R7P A;  1T9I A;  3HYI A;  2QOJ Z;  2CW7 A;  4UN9 G;  5AK9 A;  2VBO B;  2VBJ B;  1EF0 A;  4YIT A;  3QQY A;  4UNC A;  4D6O A;  4YHX A;  5AKM A;  3FD2 A;  4EFJ A;  2VBJ A;  2VBO A;  4AAD A;  4AAF A;  1G9Y A;  4UNA A;  4LQ0 A;  1VDE A;  4Z1Z A;  1DQ3 A;  1AF5 A;  1B24 A;  3MIS A;  2VBN A;  2FLD A;  4UN7 G;  4UNB A;  5A77 A;  1M5X A;  2CW8 A;  2VBL B;  4AAB A;  2AB5 A;  1JVA A;  4AAE A;  1LWS A;  3OOR A;  5A0M B;  4AQX A;  4Z20 A;  4UN8 G;  4D6N A;  5AKF A;  4Z1X A;  2VBN B;  3MXA A;  1U0D A;  1N3F A;  2VBL A;  1MOW A;  2EX5 A;  4AAG A;  5A78 A;  2VS8 A;  1R7M A;  5A0M A;  2VS7 A;  1LWT A;  5E67 A;  3C0X A;  3OOL A;  5E5O A;  3E54 A;  4AQU A;  3MIP A;  3KO2 A;  2XE0 A;  5A74 A;  5E5S A;  3UVF A;  3C0W A; 
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