4WHRB

Anhydride reaction intermediate trapped in protocatechuate 3,4-dioxygenase (pseudomonas putida) at ph 8.5
Total Genus 55

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
238
structure length
237
Chain Sequence
PAQDNSRFVIRDRNWHPKALTPDYKTSIARSPRQALVSIPQSISETTGPNFSHLGFGAHDHDLLLNFNNGGLPIGERIIVAGRVVDQYGKPVPNTLVEMWQANAGGRYRHKNDRYLAPLDPNFGGVGRLTDSDGYYSFRTIKPGPYPWRNGPNDWRPAHIHFGISGPSIATKLITQLYFEGDPLIPMCPIVKSIANPEAVQQLIAKLDMNNANPMDCLAYRFDIVLRGQRKTHFENC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structures of alkylperoxo and anhydride intermediates in an intradiol ring-cleaving dioxygenase.
pubmed doi rcsb
molecule keywords Protocatechuate 3,4-dioxygenase alpha chain
molecule tags Oxidoreductase
source organism Pseudomonas putida
total genus 55
structure length 237
sequence length 238
chains with identical sequence D
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2014-09-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00775 Dioxygenase_C Dioxygenase
B PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 4whrB00
2BUTA 3PCBM 4ILTA 2BURA 2XSUA 3TH1A 2BUXA 1EO2A 3PCNM 3I4VA 3HGIA 2BUVA 2BUWA 1EOAA 4WHPB 3LKTM 3I51A 3LXVA 1EOCB 1YKLA 2BV0A 3T67A 3PCDM 1YKMA 3PCKM 3PCJM 2BUZA 1EO9A 3T63A 3PCMA 1YKPB 1S9AA 1DMHA 1EOBB 3HJ8A 1DLMA 2XSRA 4WHSA 3PCLM 4WHQB 3PCEM 2BUQA 3PCGM 2BUUA 3MI1A 3PCAM 2BUYB 1YKOA 4WHRB 3PCNA 1YKKA 3N9TA 3LMXA 2PCDM 2BUMB 3MV6M 2BUTB 3MV4M 3O6JA 1DLQA 3PCFM 3PCCA 1EO2B 3PCKA 3PCJA 3MI5A 3MFLM 4WHPA 3HKPA 1EOCA 3O5UA 3PCBA 1YKMB 1TMXA 3PCGA 3PCAA 3PCIM 4WHSD 1YKPA 1YKNB 4WHOA 1EOBA 3LXVM 2PCDA 3LKTA 4WHQA 3MV4A 4WHOD 3HHXA 2BUQB 2BURB 2BUUB 2BUYA 2BUXB 2BOYA 3PCFA 4ILVA 4WHRA 3PCDA 3T63M 3O6RA 3PCMM 2BUVB 2BUWB 1EOAB 3MFLA 3PCHM 2BUMA 3MI1M 1YKLB 4WHPD 3PCLA 2BV0B 3PCEA 4WHRF 3LMXM 3PCIA 2BUZB 1EO9B 3HHYA 2AZQA 3O32A 3MV6A 4WHSB 3PCCM 5TD3A 3T67M 3I4YA 3HJQA 3MI5M 2XSVA 1YKOB 1DLTA 1YKNA 1YKKB 4WHOB 3PCHA 3HJSA
chains in the Genus database with same CATH superfamily
2BUTA 3PCBM 4ILTA 2BURA 2XSUA 3TH1A 2BUXA 1EO2A 3PCNM 3I4VA 3HGIA 2BUVA 2BUWA 1EOAA 4WHPB 3LKTM 3I51A 3LXVA 1EOCB 1YKLA 2BV0A 3T67A 3PCDM 1YKMA 3PCKM 3PCJM 2BUZA 1EO9A 3T63A 3PCMA 1YKPB 1S9AA 1DMHA 1EOBB 3HJ8A 1DLMA 2XSRA 4WHSA 3PCLM 4WHQB 3PCEM 2BUQA 3PCGM 2BUUA 3MI1A 3PCAM 2BUYB 1YKOA 4WHRB 3PCNA 1YKKA 3N9TA 3LMXA 2PCDM 2BUMB 3MV6M 2BUTB 3MV4M 3O6JA 1DLQA 3PCFM 3PCCA 1EO2B 3PCKA 3PCJA 3MI5A 3MFLM 4WHPA 3HKPA 1EOCA 3O5UA 3PCBA 1YKMB 1TMXA 3PCGA 3PCAA 3PCIM 4WHSD 1YKPA 1YKNB 4WHOA 1EOBA 3LXVM 2PCDA 3LKTA 4WHQA 3MV4A 4WHOD 3HHXA 2BUQB 2BURB 2BUUB 2BUYA 2BUXB 2BOYA 3PCFA 4ILVA 4WHRA 3PCDA 3T63M 3O6RA 3PCMM 2BUVB 2BUWB 1EOAB 3MFLA 3PCHM 2BUMA 3MI1M 1YKLB 4WHPD 3PCLA 2BV0B 3PCEA 4WHRF 3LMXM 3PCIA 2BUZB 1EO9B 3HHYA 2AZQA 3O32A 3MV6A 4WHSB 3PCCM 5TD3A 3T67M 3I4YA 3HJQA 3MI5M 2XSVA 1YKOB 1DLTA 1YKNA 1YKKB 4WHOB 3PCHA 3HJSA
chains in the Genus database with same CATH topology
2BUTA 3PCBM 4ILTA 2BURA 2XSUA 3TH1A 2BUXA 1EO2A 3PCNM 3I4VA 3HGIA 2BUVA 2BUWA 1EOAA 4WHPB 3LKTM 3I51A 3LXVA 1EOCB 1YKLA 2BV0A 3T67A 3PCDM 1YKMA 3PCKM 3PCJM 2BUZA 1EO9A 3T63A 3PCMA 1YKPB 1S9AA 1DMHA 1EOBB 3HJ8A 1DLMA 2XSRA 4WHSA 3PCLM 4WHQB 3PCEM 2BUQA 3PCGM 2BUUA 3MI1A 3PCAM 2BUYB 1YKOA 4WHRB 3PCNA 1YKKA 3N9TA 3LMXA 2PCDM 2BUMB 3MV6M 2BUTB 3MV4M 3O6JA 1DLQA 3PCFM 3PCCA 1EO2B 3PCKA 3PCJA 3MI5A 3MFLM 4WHPA 3HKPA 1EOCA 3O5UA 3PCBA 1YKMB 1TMXA 3PCGA 3PCAA 3PCIM 4WHSD 1YKPA 1YKNB 4WHOA 1EOBA 3LXVM 2PCDA 3LKTA 4WHQA 3MV4A 4WHOD 3HHXA 2BUQB 2BURB 2BUUB 2BUYA 2BUXB 2BOYA 3PCFA 4ILVA 4WHRA 3PCDA 3T63M 3O6RA 3PCMM 2BUVB 2BUWB 1EOAB 3MFLA 3PCHM 2BUMA 3MI1M 1YKLB 4WHPD 3PCLA 2BV0B 3PCEA 4WHRF 3LMXM 3PCIA 2BUZB 1EO9B 3HHYA 2AZQA 3O32A 3MV6A 4WHSB 3PCCM 5TD3A 3T67M 3I4YA 3HJQA 3MI5M 2XSVA 1YKOB 1DLTA 1YKNA 1YKKB 4WHOB 3PCHA 3HJSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BUT A;  3PCB M;  4ILT A;  2BUR A;  2XSU A;  3TH1 A;  2BUX A;  1EO2 A;  3PCN M;  3I4V A;  3HGI A;  2BUV A;  2BUW A;  1EOA A;  4WHP B;  3LKT M;  3I51 A;  3LXV A;  1EOC B;  1YKL A;  2BV0 A;  3T67 A;  3PCD M;  1YKM A;  3PCK M;  3PCJ M;  2BUZ A;  1EO9 A;  3T63 A;  3PCM A;  1YKP B;  1S9A A;  1DMH A;  1EOB B;  3HJ8 A;  1DLM A;  2XSR A;  4WHS A;  3PCL M;  4WHQ B;  3PCE M;  2BUQ A;  3PCG M;  2BUU A;  3MI1 A;  3PCA M;  2BUY B;  1YKO A;  4WHR B;  3PCN A;  1YKK A;  3N9T A;  3LMX A;  2PCD M;  2BUM B;  3MV6 M;  2BUT B;  3MV4 M;  3O6J A;  1DLQ A;  3PCF M;  3PCC A;  1EO2 B;  3PCK A;  3PCJ A;  3MI5 A;  3MFL M;  4WHP A;  3HKP A;  1EOC A;  3O5U A;  3PCB A;  1YKM B;  1TMX A;  3PCG A;  3PCA A;  3PCI M;  4WHS D;  1YKP A;  1YKN B;  4WHO A;  1EOB A;  3LXV M;  2PCD A;  3LKT A;  4WHQ A;  3MV4 A;  4WHO D;  3HHX A;  2BUQ B;  2BUR B;  2BUU B;  2BUY A;  2BUX B;  2BOY A;  3PCF A;  4ILV A;  4WHR A;  3PCD A;  3T63 M;  3O6R A;  3PCM M;  2BUV B;  2BUW B;  1EOA B;  3MFL A;  3PCH M;  2BUM A;  3MI1 M;  1YKL B;  4WHP D;  3PCL A;  2BV0 B;  3PCE A;  4WHR F;  3LMX M;  3PCI A;  2BUZ B;  1EO9 B;  3HHY A;  2AZQ A;  3O32 A;  3MV6 A;  4WHS B;  3PCC M;  5TD3 A;  3T67 M;  3I4Y A;  3HJQ A;  3MI5 M;  2XSV A;  1YKO B;  1DLT A;  1YKN A;  1YKK B;  4WHO B;  3PCH A;  3HJS A; 
#chains in the Genus database with same CATH topology
 2BUT A;  3PCB M;  4ILT A;  2BUR A;  2XSU A;  3TH1 A;  2BUX A;  1EO2 A;  3PCN M;  3I4V A;  3HGI A;  2BUV A;  2BUW A;  1EOA A;  4WHP B;  3LKT M;  3I51 A;  3LXV A;  1EOC B;  1YKL A;  2BV0 A;  3T67 A;  3PCD M;  1YKM A;  3PCK M;  3PCJ M;  2BUZ A;  1EO9 A;  3T63 A;  3PCM A;  1YKP B;  1S9A A;  1DMH A;  1EOB B;  3HJ8 A;  1DLM A;  2XSR A;  4WHS A;  3PCL M;  4WHQ B;  3PCE M;  2BUQ A;  3PCG M;  2BUU A;  3MI1 A;  3PCA M;  2BUY B;  1YKO A;  4WHR B;  3PCN A;  1YKK A;  3N9T A;  3LMX A;  2PCD M;  2BUM B;  3MV6 M;  2BUT B;  3MV4 M;  3O6J A;  1DLQ A;  3PCF M;  3PCC A;  1EO2 B;  3PCK A;  3PCJ A;  3MI5 A;  3MFL M;  4WHP A;  3HKP A;  1EOC A;  3O5U A;  3PCB A;  1YKM B;  1TMX A;  3PCG A;  3PCA A;  3PCI M;  4WHS D;  1YKP A;  1YKN B;  4WHO A;  1EOB A;  3LXV M;  2PCD A;  3LKT A;  4WHQ A;  3MV4 A;  4WHO D;  3HHX A;  2BUQ B;  2BUR B;  2BUU B;  2BUY A;  2BUX B;  2BOY A;  3PCF A;  4ILV A;  4WHR A;  3PCD A;  3T63 M;  3O6R A;  3PCM M;  2BUV B;  2BUW B;  1EOA B;  3MFL A;  3PCH M;  2BUM A;  3MI1 M;  1YKL B;  4WHP D;  3PCL A;  2BV0 B;  3PCE A;  4WHR F;  3LMX M;  3PCI A;  2BUZ B;  1EO9 B;  3HHY A;  2AZQ A;  3O32 A;  3MV6 A;  4WHS B;  3PCC M;  5TD3 A;  3T67 M;  3I4Y A;  3HJQ A;  3MI5 M;  2XSV A;  1YKO B;  1DLT A;  1YKN A;  1YKK B;  4WHO B;  3PCH A;  3HJS A; 
#chains in the Genus database with same CATH homology
 2BUT A;  3PCB M;  4ILT A;  2BUR A;  2XSU A;  3TH1 A;  2BUX A;  1EO2 A;  3PCN M;  3I4V A;  3HGI A;  2BUV A;  2BUW A;  1EOA A;  4WHP B;  3LKT M;  3I51 A;  3LXV A;  1EOC B;  1YKL A;  2BV0 A;  3T67 A;  3PCD M;  1YKM A;  3PCK M;  3PCJ M;  2BUZ A;  1EO9 A;  3T63 A;  3PCM A;  1YKP B;  1S9A A;  1DMH A;  1EOB B;  3HJ8 A;  1DLM A;  2XSR A;  4WHS A;  3PCL M;  4WHQ B;  3PCE M;  2BUQ A;  3PCG M;  2BUU A;  3MI1 A;  3PCA M;  2BUY B;  1YKO A;  4WHR B;  3PCN A;  1YKK A;  3N9T A;  3LMX A;  2PCD M;  2BUM B;  3MV6 M;  2BUT B;  3MV4 M;  3O6J A;  1DLQ A;  3PCF M;  3PCC A;  1EO2 B;  3PCK A;  3PCJ A;  3MI5 A;  3MFL M;  4WHP A;  3HKP A;  1EOC A;  3O5U A;  3PCB A;  1YKM B;  1TMX A;  3PCG A;  3PCA A;  3PCI M;  4WHS D;  1YKP A;  1YKN B;  4WHO A;  1EOB A;  3LXV M;  2PCD A;  3LKT A;  4WHQ A;  3MV4 A;  4WHO D;  3HHX A;  2BUQ B;  2BUR B;  2BUU B;  2BUY A;  2BUX B;  2BOY A;  3PCF A;  4ILV A;  4WHR A;  3PCD A;  3T63 M;  3O6R A;  3PCM M;  2BUV B;  2BUW B;  1EOA B;  3MFL A;  3PCH M;  2BUM A;  3MI1 M;  1YKL B;  4WHP D;  3PCL A;  2BV0 B;  3PCE A;  4WHR F;  3LMX M;  3PCI A;  2BUZ B;  1EO9 B;  3HHY A;  2AZQ A;  3O32 A;  3MV6 A;  4WHS B;  3PCC M;  5TD3 A;  3T67 M;  3I4Y A;  3HJQ A;  3MI5 M;  2XSV A;  1YKO B;  1DLT A;  1YKN A;  1YKK B;  4WHO B;  3PCH A;  3HJS A; 
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