4YHXA

Crystal structure of laglidadg meganuclease i-gpemi bound to uncleaved dna
Total Genus 88

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
304
structure length
294
Chain Sequence
NESINPWVLTGFADAEGSFILRIRNNNKSSAGYSTELGFQITLHKKDKSILENIQSTWKVGVIANSGDNAVSLKVTRFEDLRVVLNHFEKYPLITQKLGDYLLFKQAFSVMENKEHLKIEGIKRLVGIKANLNWGLTDELKEAFVASGGENIFNKNIPNSGWLAGFTSGEGCFFVSLIKSKSKLGVQVQLVFSITQHARDRELMDNLVTYLGCGYIKEKKKSEFSWLEFVVTKFSDIKDKIIPVFQENNIIGVKLEDFEDWCKVAKLIEEKKHLTESGLEEIRNIKLNMNKGRV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (51-61)O1 (4-6)EMPTYAH1 (9-19)S2 (36-47)AH5 (122-133)S1 (20-28)TI1 (29-32)TI3 (70-73)AH9 (247-260)S4 (73-78)S3 (65-69)AH4 (99-116)3H2 (118-120)TII'1 (135-138)AH6 (141-147)TII1 (149-152)AH11 (289-301)AH7 (173-183)3H4 (285-287)S5 (184-192)S7 (228-234)TI4 (195-198)AH8 (214-224)S6 (199-210)3H3 (211-213)S8 (237-244)TII'2 (234-237)AH10 (266-283)AH3 (81-93)TI2 (32-35)3H1 (48-50)Updating...
connected with : NaN
molecule tags Hydrolase/dna
source organism Grosmannia penicillata
publication title Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity.
pubmed doi rcsb
molecule keywords Ribosomal protein 3/homing endonuclease-like fusion protein
total genus 88
structure length 294
sequence length 304
ec nomenclature
pdb deposition date 2015-02-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4yhxA01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 4yhxA02
5AKNA 3MIPA 1LWSA 3EH8A 4YHXA 2O7MA 5A0WA 4AABA 2EX5A 1N3EA 1UM2A 4AAFA 2DCHX 4UN9G 3HYIA 5A0MB 3QQYA 2I3QA 1AF5A 2CW7A 1EF0A 4UN7G 5AK9A 2VBOA 4AAEA 4Z20A 4LOXA 4Z1XA 5E5SA 4UN8A 2XE0A 1VDEA 3FD2A 3MX9A 2VBJA 2VBLB 2QOJZ 2FLDA 2VBNB 1B24A 1T9IA 2VS8A 1MOWA 1U0CA 4UNAA 1T9JA 3OOLA 1G9YA 3KO2A 1BP7A 3MXBB 4AAGA 1U0DA 5AKMA 4YITA 5A74A 1DFAA 4AADA 5E67A 5A78A 4UN7A 3HYJA 5A0MA 3MXAA 5E63A 1JVAA 1P8KZ 5E5OA 4EFJA 4UNCA 3MISA 1M5XA 2AB5A 2VBLA 2VS7A 4UN8G 2VBNA 4UN9A 4LQ0A 5AKFA 4D6NA 4AQUA 3MXBA 1LWTA 1G9ZA 3OORA 3E54A 3C0WA 1R7MA 2VBOB 4UT0A 4AQXA 4UNBA 2I3PA 2XE0B 5A72A 4Z1ZA 5A77A 2VBJB 4D6OA 4YISA 2CW8A 3R7PA 3C0XA 3UVFA 1DQ3A 1N3FA
chains in the Genus database with same CATH superfamily
5AKNA 3MIPA 1LWSA 3EH8A 4YHXA 2O7MA 5A0WA 4AABA 2EX5A 1N3EA 1UM2A 4AAFA 2DCHX 4UN9G 3HYIA 5A0MB 3QQYA 2I3QA 1AF5A 2CW7A 1EF0A 4UN7G 5AK9A 2VBOA 4AAEA 4Z20A 4LOXA 4Z1XA 5E5SA 4UN8A 2XE0A 1VDEA 3FD2A 3MX9A 2VBJA 2VBLB 2QOJZ 2F4LA 2FLDA 2VBNB 1B24A 1T9IA 2VS8A 1MOWA 1U0CA 4UNAA 1T9JA 3OOLA 1G9YA 3KO2A 1BP7A 3MXBB 4AAGA 1U0DA 5AKMA 4YITA 5A74A 1DFAA 4AADA 5E67A 5A78A 4UN7A 3HYJA 5A0MA 3MXAA 5E63A 1JVAA 1P8KZ 5E5OA 4EFJA 4UNCA 3MISA 1M5XA 2AB5A 2VBLA 2VS7A 4UN8G 4KZSA 2VBNA 4UN9A 4LQ0A 5AKFA 4D6NA 4AQUA 3MXBA 1LWTA 1G9ZA 3OORA 3E54A 3C0WA 1R7MA 2VBOB 4UT0A 4AQXA 4UNBA 2I3PA 2XE0B 5A72A 4Z1ZA 5A77A 2VBJB 4D6OA 4YISA 2CW8A 3R7PA 3C0XA 3UVFA 1DQ3A 1N3FA
chains in the Genus database with same CATH topology
5AKNA 3MIPA 1LWSA 3EH8A 4YHXA 2O7MA 5A0WA 4AABA 2EX5A 1N3EA 1UM2A 4AAFA 2DCHX 4UN9G 3HYIA 5A0MB 3QQYA 2I3QA 1AF5A 2CW7A 1EF0A 4UN7G 5AK9A 2VBOA 4AAEA 4Z20A 4LOXA 4Z1XA 5E5SA 4UN8A 2XE0A 1VDEA 3FD2A 3MX9A 2VBJA 2VBLB 2QOJZ 2FLDA 2VBNB 1B24A 1T9IA 2VS8A 1MOWA 1U0CA 4UNAA 1T9JA 3OOLA 1G9YA 3KO2A 1BP7A 3MXBB 4AAGA 1U0DA 5AKMA 4YITA 5A74A 1DFAA 4AADA 5E67A 5A78A 4UN7A 3HYJA 5A0MA 3MXAA 5E63A 1JVAA 1P8KZ 5E5OA 4EFJA 4UNCA 3MISA 1M5XA 2AB5A 2VBLA 2VS7A 4UN8G 2VBNA 4UN9A 4LQ0A 5AKFA 4D6NA 4AQUA 3MXBA 1LWTA 1G9ZA 3OORA 3E54A 3C0WA 1R7MA 2VBOB 4UT0A 4AQXA 4UNBA 2I3PA 2XE0B 5A72A 4Z1ZA 5A77A 2VBJB 4D6OA 4YISA 2CW8A 3R7PA 3C0XA 3UVFA 1DQ3A 1N3FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AKN A;  3MIP A;  1LWS A;  3EH8 A;  4YHX A;  2O7M A;  5A0W A;  4AAB A;  2EX5 A;  1N3E A;  1UM2 A;  4AAF A;  2DCH X;  4UN9 G;  3HYI A;  5A0M B;  3QQY A;  2I3Q A;  1AF5 A;  2CW7 A;  1EF0 A;  4UN7 G;  5AK9 A;  2VBO A;  4AAE A;  4Z20 A;  4LOX A;  4Z1X A;  5E5S A;  4UN8 A;  2XE0 A;  1VDE A;  3FD2 A;  3MX9 A;  2VBJ A;  2VBL B;  2QOJ Z;  2FLD A;  2VBN B;  1B24 A;  1T9I A;  2VS8 A;  1MOW A;  1U0C A;  4UNA A;  1T9J A;  3OOL A;  1G9Y A;  3KO2 A;  1BP7 A;  3MXB B;  4AAG A;  1U0D A;  5AKM A;  4YIT A;  5A74 A;  1DFA A;  4AAD A;  5E67 A;  5A78 A;  4UN7 A;  3HYJ A;  5A0M A;  3MXA A;  5E63 A;  1JVA A;  1P8K Z;  5E5O A;  4EFJ A;  4UNC A;  3MIS A;  1M5X A;  2AB5 A;  2VBL A;  2VS7 A;  4UN8 G;  2VBN A;  4UN9 A;  4LQ0 A;  5AKF A;  4D6N A;  4AQU A;  3MXB A;  1LWT A;  1G9Z A;  3OOR A;  3E54 A;  3C0W A;  1R7M A;  2VBO B;  4UT0 A;  4AQX A;  4UNB A;  2I3P A;  2XE0 B;  5A72 A;  4Z1Z A;  5A77 A;  2VBJ B;  4D6O A;  4YIS A;  2CW8 A;  3R7P A;  3C0X A;  3UVF A;  1DQ3 A;  1N3F A; 
#chains in the Genus database with same CATH topology
 5AKN A;  3MIP A;  1LWS A;  3EH8 A;  4YHX A;  2O7M A;  5A0W A;  4AAB A;  2EX5 A;  1N3E A;  1UM2 A;  4AAF A;  2DCH X;  4UN9 G;  3HYI A;  5A0M B;  3QQY A;  2I3Q A;  1AF5 A;  2CW7 A;  1EF0 A;  4UN7 G;  5AK9 A;  2VBO A;  4AAE A;  4Z20 A;  4LOX A;  4Z1X A;  5E5S A;  4UN8 A;  2XE0 A;  1VDE A;  3FD2 A;  3MX9 A;  2VBJ A;  2VBL B;  2QOJ Z;  2F4L A;  2FLD A;  2VBN B;  1B24 A;  1T9I A;  2VS8 A;  1MOW A;  1U0C A;  4UNA A;  1T9J A;  3OOL A;  1G9Y A;  3KO2 A;  1BP7 A;  3MXB B;  4AAG A;  1U0D A;  5AKM A;  4YIT A;  5A74 A;  1DFA A;  4AAD A;  5E67 A;  5A78 A;  4UN7 A;  3HYJ A;  5A0M A;  3MXA A;  5E63 A;  1JVA A;  1P8K Z;  5E5O A;  4EFJ A;  4UNC A;  3MIS A;  1M5X A;  2AB5 A;  2VBL A;  2VS7 A;  4UN8 G;  4KZS A;  2VBN A;  4UN9 A;  4LQ0 A;  5AKF A;  4D6N A;  4AQU A;  3MXB A;  1LWT A;  1G9Z A;  3OOR A;  3E54 A;  3C0W A;  1R7M A;  2VBO B;  4UT0 A;  4AQX A;  4UNB A;  2I3P A;  2XE0 B;  5A72 A;  4Z1Z A;  5A77 A;  2VBJ B;  4D6O A;  4YIS A;  2CW8 A;  3R7P A;  3C0X A;  3UVF A;  1DQ3 A;  1N3F A; 
#chains in the Genus database with same CATH homology
 5AKN A;  3MIP A;  1LWS A;  3EH8 A;  4YHX A;  2O7M A;  5A0W A;  4AAB A;  2EX5 A;  1N3E A;  1UM2 A;  4AAF A;  2DCH X;  4UN9 G;  3HYI A;  5A0M B;  3QQY A;  2I3Q A;  1AF5 A;  2CW7 A;  1EF0 A;  4UN7 G;  5AK9 A;  2VBO A;  4AAE A;  4Z20 A;  4LOX A;  4Z1X A;  5E5S A;  4UN8 A;  2XE0 A;  1VDE A;  3FD2 A;  3MX9 A;  2VBJ A;  2VBL B;  2QOJ Z;  2FLD A;  2VBN B;  1B24 A;  1T9I A;  2VS8 A;  1MOW A;  1U0C A;  4UNA A;  1T9J A;  3OOL A;  1G9Y A;  3KO2 A;  1BP7 A;  3MXB B;  4AAG A;  1U0D A;  5AKM A;  4YIT A;  5A74 A;  1DFA A;  4AAD A;  5E67 A;  5A78 A;  4UN7 A;  3HYJ A;  5A0M A;  3MXA A;  5E63 A;  1JVA A;  1P8K Z;  5E5O A;  4EFJ A;  4UNC A;  3MIS A;  1M5X A;  2AB5 A;  2VBL A;  2VS7 A;  4UN8 G;  2VBN A;  4UN9 A;  4LQ0 A;  5AKF A;  4D6N A;  4AQU A;  3MXB A;  1LWT A;  1G9Z A;  3OOR A;  3E54 A;  3C0W A;  1R7M A;  2VBO B;  4UT0 A;  4AQX A;  4UNB A;  2I3P A;  2XE0 B;  5A72 A;  4Z1Z A;  5A77 A;  2VBJ B;  4D6O A;  4YIS A;  2CW8 A;  3R7P A;  3C0X A;  3UVF A;  1DQ3 A;  1N3F A; 
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