4ZQU | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	124
structure length	124
Chain Sequence	MPWEDYVGKTLPVGSRLPPNFKTYDYFDRATGAVVSAKSLDTQTMAKLSNPNQVYSSIKKNIDVTAKFEKASLSGVTVNSSMITSKEVRLAVPVNTTKAQWTEINRAIEYGKNQGVKVTVTQVK

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 124 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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124 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Toxin
source organism	Yersinia pseudotuberculosis serotype o:3 (strain ypiii)
publication title	Diversification of beta-Augmentation Interactions between CDI Toxin/Immunity Proteins. pubmed doi rcsb
molecule keywords	CdiA-CT toxin, Conserved domain protein
total genus	39
structure length	124
sequence length	124
ec nomenclature
pdb deposition date	2015-05-11

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.1350.110	Alpha Beta	3-Layer(aba) Sandwich	Trna Endonuclease; Chain: A, domain 1	Trna Endonuclease; Chain: A, domain 1	4zquA00

4ZQUA 4G6UA
chains in the Genus database with same CATH superfamily

1HH1A 1XMXA 4G6UA 2WIWA 2CV8A 2W8MA 2FKHB 1Y88A 2WCWA 3IF0X 4DAPA 1R0VA 2IXSA 2ZYZB 4TKDA 1ZP7A 2ZYZA 4LQEA 2DBSA 1YNMA 2WIZA 2VS1A 2EO0A 2WJ0A 2OKFA 3IEYB 1T0FA 2GJWA 1RLVA 3IEYA 2GW6A 4G6VA 2FL3A 1OB9A 4EV1A 1A79A 2INBA 1GEFA 3FOVA 4QBOA 4ZQUA 2FCOA 1OB8A 4E6ZA 4DAVA 2BH2A 1RZNA 5FDKA 2VLDA 3AJVB 4QBLA 3AJVA 4QBNA 1R11A 1IPIA 2JJQA 2WCZA 3P1ZA 1UWVA 2Z0RA 3DNXA 3P1YA 3P1ZB 4TKKA 4DA2A 2CZRA 2FKCA 2FLCA 2OSTA 1F1ZA 3BT7A 1Y1OA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4ZQU A;  4G6U A; 
#chains in the Genus database with same CATH topology
 1HH1 A;  1XMX A;  4G6U A;  2WIW A;  2CV8 A;  2W8M A;  2FKH B;  1Y88 A;  2WCW A;  3IF0 X;  4DAP A;  1R0V A;  2IXS A;  2ZYZ B;  4TKD A;  1ZP7 A;  2ZYZ A;  4LQE A;  2DBS A;  1YNM A;  2WIZ A;  2VS1 A;  2EO0 A;  2WJ0 A;  2OKF A;  3IEY B;  1T0F A;  2GJW A;  1RLV A;  3IEY A;  2GW6 A;  4G6V A;  2FL3 A;  1OB9 A;  4EV1 A;  1A79 A;  2INB A;  1GEF A;  3FOV A;  4QBO A;  4ZQU A;  2FCO A;  1OB8 A;  4E6Z A;  4DAV A;  2BH2 A;  1RZN A;  5FDK A;  2VLD A;  3AJV B;  4QBL A;  3AJV A;  4QBN A;  1R11 A;  1IPI A;  2JJQ A;  2WCZ A;  3P1Z A;  1UWV A;  2Z0R A;  3DNX A;  3P1Y A;  3P1Z B;  4TKK A;  4DA2 A;  2CZR A;  2FKC A;  2FLC A;  2OST A;  1F1Z A;  3BT7 A;  1Y1O A; 
#chains in the Genus database with same CATH homology
 1HH1 A;  1XMX A;  4G6U A;  2WIW A;  2CV8 A;  2W8M A;  2FKH B;  1Y88 A;  2WCW A;  3IF0 X;  4DAP A;  1R0V A;  2IXS A;  2ZYZ B;  4TKD A;  1ZP7 A;  2ZYZ A;  4LQE A;  2DBS A;  1YNM A;  2WIZ A;  2VS1 A;  2EO0 A;  2WJ0 A;  2OKF A;  3IEY B;  1T0F A;  2GJW A;  1RLV A;  3IEY A;  2GW6 A;  4G6V A;  2FL3 A;  1OB9 A;  4EV1 A;  1A79 A;  2INB A;  1GEF A;  3FOV A;  4QBO A;  4ZQU A;  2FCO A;  1OB8 A;  4E6Z A;  4DAV A;  2BH2 A;  1RZN A;  5FDK A;  2VLD A;  3AJV B;  4QBL A;  3AJV A;  4QBN A;  1R11 A;  1IPI A;  2JJQ A;  2WCZ A;  3P1Z A;  1UWV A;  2Z0R A;  3DNX A;  3P1Y A;  3P1Z B;  4TKK A;  4DA2 A;  2CZR A;  2FKC A;  2FLC A;  2OST A;  1F1Z A;  3BT7 A;  1Y1O A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4ZQUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization