5A78A

Crystal structure of the homing endonuclease i-cvui in complex with i- crei target (c1221) in the presence of 2 mm mg revealing dna not cleaved
Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
157
structure length
157
Chain Sequence
NFHDQLKFAWLAGFVDADGCINAQIVSREDYLLKYQVRVSLTVFQSTTQHFILLDIQKILGCGTVRKRNDGMSEFCVVGGTSLQTTLEKLLPYLQLKRAQAKLVLQIIKKLPNTKDPSVLMEAALLADKVGLLTDGKKRTILAENVRECLKKLGHVV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH3 (87-96)EMPTYAH1 (7-23)TI4 (96-99)TIV2 (99-102)TI2 (36-39)S1 (26-32)TI1 (33-36)S4 (77-83)S2 (40-51)AH2 (55-65)TIV1 (73-76)AH4 (103-114)3H2 (116-118)AH5 (122-137)S3 (69-72)3H1 (52-54)TI3 (84-87)TI6 (118-121)AH6 (148-158)Updating...
connected with : NaN
molecule tags Hydrolase/dna
source organism Chlorella vulgaris
publication title Crystal Structure of the Homing Endonuclease I-Cvui Provides a New Template for Genome Modification
pubmed doi rcsb
molecule keywords DNA ENDONUCLEASE I-CVUI
total genus 46
structure length 157
sequence length 157
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2015-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 5a78A00
2VBNA 5AKNA 1G9YA 4YISA 2VS8A 2I3PA 3UVFA 1B24A 4AAGA 4D6NA 2VBOA 4UNCA 2VBJB 1T9IA 1BP7A 2CW7A 4UN9A 4UN9G 2O7MA 1R7MA 1G9ZA 2EX5A 1AF5A 2AB5A 1DQ3A 5AK9A 3C0XA 2I3QA 1N3EA 1T9JA 4UT0A 5A72A 2VBLA 1DFAA 5A78A 5E5SA 2DCHX 3OOLA 1LWTA 4D6OA 4UNBA 1U0CA 2XE0B 4AQXA 3HYIA 4YHXA 3MXBA 5E63A 4AAFA 3MXAA 4YITA 1P8KZ 1U0DA 2QOJZ 4AQUA 3MISA 3EH8A 5AKFA 4AABA 5A0MA 4Z20A 1LWSA 3R7PA 2FLDA 4AAEA 4AADA 1UM2A 1N3FA 5E5OA 2XE0A 1MOWA 2VBOB 5A74A 4LOXA 4LQ0A 2CW8A 2VBJA 4EFJA 3HYJA 3FD2A 3E54A 1JVAA 3C0WA 5E67A 3QQYA 3KO2A 2VS7A 4UN8A 4UN8G 5A0WA 4UN7A 4UN7G 2VBNB 2VBLB 1EF0A 4UNAA 3OORA 5A77A 3MXBB 1VDEA 3MX9A 3MIPA 5AKMA 4Z1XA 4Z1ZA 1M5XA 5A0MB
chains in the Genus database with same CATH superfamily
2VBNA 5AKNA 1G9YA 4YISA 2VS8A 2I3PA 3UVFA 1B24A 4AAGA 4D6NA 2VBOA 4UNCA 2VBJB 1T9IA 1BP7A 2CW7A 4UN9A 4UN9G 2O7MA 1R7MA 1G9ZA 2EX5A 1AF5A 2AB5A 1DQ3A 5AK9A 3C0XA 2I3QA 1N3EA 1T9JA 4UT0A 5A72A 2VBLA 1DFAA 5A78A 5E5SA 2DCHX 4KZSA 3OOLA 1LWTA 4D6OA 4UNBA 1U0CA 2XE0B 4AQXA 3HYIA 4YHXA 3MXBA 5E63A 4AAFA 2F4LA 3MXAA 4YITA 1P8KZ 1U0DA 2QOJZ 4AQUA 3MISA 3EH8A 5AKFA 4AABA 5A0MA 4Z20A 1LWSA 3R7PA 2FLDA 4AAEA 4AADA 1UM2A 1N3FA 5E5OA 2XE0A 1MOWA 2VBOB 5A74A 4LOXA 4LQ0A 2CW8A 2VBJA 4EFJA 3HYJA 3FD2A 3E54A 1JVAA 3C0WA 5E67A 3QQYA 3KO2A 2VS7A 4UN8A 4UN8G 5A0WA 4UN7A 4UN7G 2VBNB 2VBLB 1EF0A 4UNAA 3OORA 5A77A 3MXBB 1VDEA 3MX9A 3MIPA 5AKMA 4Z1XA 4Z1ZA 1M5XA 5A0MB
chains in the Genus database with same CATH topology
2VBNA 5AKNA 1G9YA 4YISA 2VS8A 2I3PA 3UVFA 1B24A 4AAGA 4D6NA 2VBOA 4UNCA 2VBJB 1T9IA 1BP7A 2CW7A 4UN9A 4UN9G 2O7MA 1R7MA 1G9ZA 2EX5A 1AF5A 2AB5A 1DQ3A 5AK9A 3C0XA 2I3QA 1N3EA 1T9JA 4UT0A 5A72A 2VBLA 1DFAA 5A78A 5E5SA 2DCHX 3OOLA 1LWTA 4D6OA 4UNBA 1U0CA 2XE0B 4AQXA 3HYIA 4YHXA 3MXBA 5E63A 4AAFA 3MXAA 4YITA 1P8KZ 1U0DA 2QOJZ 4AQUA 3MISA 3EH8A 5AKFA 4AABA 5A0MA 4Z20A 1LWSA 3R7PA 2FLDA 4AAEA 4AADA 1UM2A 1N3FA 5E5OA 2XE0A 1MOWA 2VBOB 5A74A 4LOXA 4LQ0A 2CW8A 2VBJA 4EFJA 3HYJA 3FD2A 3E54A 1JVAA 3C0WA 5E67A 3QQYA 3KO2A 2VS7A 4UN8A 4UN8G 5A0WA 4UN7A 4UN7G 2VBNB 2VBLB 1EF0A 4UNAA 3OORA 5A77A 3MXBB 1VDEA 3MX9A 3MIPA 5AKMA 4Z1XA 4Z1ZA 1M5XA 5A0MB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VBN A;  5AKN A;  1G9Y A;  4YIS A;  2VS8 A;  2I3P A;  3UVF A;  1B24 A;  4AAG A;  4D6N A;  2VBO A;  4UNC A;  2VBJ B;  1T9I A;  1BP7 A;  2CW7 A;  4UN9 A;  4UN9 G;  2O7M A;  1R7M A;  1G9Z A;  2EX5 A;  1AF5 A;  2AB5 A;  1DQ3 A;  5AK9 A;  3C0X A;  2I3Q A;  1N3E A;  1T9J A;  4UT0 A;  5A72 A;  2VBL A;  1DFA A;  5A78 A;  5E5S A;  2DCH X;  3OOL A;  1LWT A;  4D6O A;  4UNB A;  1U0C A;  2XE0 B;  4AQX A;  3HYI A;  4YHX A;  3MXB A;  5E63 A;  4AAF A;  3MXA A;  4YIT A;  1P8K Z;  1U0D A;  2QOJ Z;  4AQU A;  3MIS A;  3EH8 A;  5AKF A;  4AAB A;  5A0M A;  4Z20 A;  1LWS A;  3R7P A;  2FLD A;  4AAE A;  4AAD A;  1UM2 A;  1N3F A;  5E5O A;  2XE0 A;  1MOW A;  2VBO B;  5A74 A;  4LOX A;  4LQ0 A;  2CW8 A;  2VBJ A;  4EFJ A;  3HYJ A;  3FD2 A;  3E54 A;  1JVA A;  3C0W A;  5E67 A;  3QQY A;  3KO2 A;  2VS7 A;  4UN8 A;  4UN8 G;  5A0W A;  4UN7 A;  4UN7 G;  2VBN B;  2VBL B;  1EF0 A;  4UNA A;  3OOR A;  5A77 A;  3MXB B;  1VDE A;  3MX9 A;  3MIP A;  5AKM A;  4Z1X A;  4Z1Z A;  1M5X A;  5A0M B; 
#chains in the Genus database with same CATH topology
 2VBN A;  5AKN A;  1G9Y A;  4YIS A;  2VS8 A;  2I3P A;  3UVF A;  1B24 A;  4AAG A;  4D6N A;  2VBO A;  4UNC A;  2VBJ B;  1T9I A;  1BP7 A;  2CW7 A;  4UN9 A;  4UN9 G;  2O7M A;  1R7M A;  1G9Z A;  2EX5 A;  1AF5 A;  2AB5 A;  1DQ3 A;  5AK9 A;  3C0X A;  2I3Q A;  1N3E A;  1T9J A;  4UT0 A;  5A72 A;  2VBL A;  1DFA A;  5A78 A;  5E5S A;  2DCH X;  4KZS A;  3OOL A;  1LWT A;  4D6O A;  4UNB A;  1U0C A;  2XE0 B;  4AQX A;  3HYI A;  4YHX A;  3MXB A;  5E63 A;  4AAF A;  2F4L A;  3MXA A;  4YIT A;  1P8K Z;  1U0D A;  2QOJ Z;  4AQU A;  3MIS A;  3EH8 A;  5AKF A;  4AAB A;  5A0M A;  4Z20 A;  1LWS A;  3R7P A;  2FLD A;  4AAE A;  4AAD A;  1UM2 A;  1N3F A;  5E5O A;  2XE0 A;  1MOW A;  2VBO B;  5A74 A;  4LOX A;  4LQ0 A;  2CW8 A;  2VBJ A;  4EFJ A;  3HYJ A;  3FD2 A;  3E54 A;  1JVA A;  3C0W A;  5E67 A;  3QQY A;  3KO2 A;  2VS7 A;  4UN8 A;  4UN8 G;  5A0W A;  4UN7 A;  4UN7 G;  2VBN B;  2VBL B;  1EF0 A;  4UNA A;  3OOR A;  5A77 A;  3MXB B;  1VDE A;  3MX9 A;  3MIP A;  5AKM A;  4Z1X A;  4Z1Z A;  1M5X A;  5A0M B; 
#chains in the Genus database with same CATH homology
 2VBN A;  5AKN A;  1G9Y A;  4YIS A;  2VS8 A;  2I3P A;  3UVF A;  1B24 A;  4AAG A;  4D6N A;  2VBO A;  4UNC A;  2VBJ B;  1T9I A;  1BP7 A;  2CW7 A;  4UN9 A;  4UN9 G;  2O7M A;  1R7M A;  1G9Z A;  2EX5 A;  1AF5 A;  2AB5 A;  1DQ3 A;  5AK9 A;  3C0X A;  2I3Q A;  1N3E A;  1T9J A;  4UT0 A;  5A72 A;  2VBL A;  1DFA A;  5A78 A;  5E5S A;  2DCH X;  3OOL A;  1LWT A;  4D6O A;  4UNB A;  1U0C A;  2XE0 B;  4AQX A;  3HYI A;  4YHX A;  3MXB A;  5E63 A;  4AAF A;  3MXA A;  4YIT A;  1P8K Z;  1U0D A;  2QOJ Z;  4AQU A;  3MIS A;  3EH8 A;  5AKF A;  4AAB A;  5A0M A;  4Z20 A;  1LWS A;  3R7P A;  2FLD A;  4AAE A;  4AAD A;  1UM2 A;  1N3F A;  5E5O A;  2XE0 A;  1MOW A;  2VBO B;  5A74 A;  4LOX A;  4LQ0 A;  2CW8 A;  2VBJ A;  4EFJ A;  3HYJ A;  3FD2 A;  3E54 A;  1JVA A;  3C0W A;  5E67 A;  3QQY A;  3KO2 A;  2VS7 A;  4UN8 A;  4UN8 G;  5A0W A;  4UN7 A;  4UN7 G;  2VBN B;  2VBL B;  1EF0 A;  4UNA A;  3OOR A;  5A77 A;  3MXB B;  1VDE A;  3MX9 A;  3MIP A;  5AKM A;  4Z1X A;  4Z1Z A;  1M5X A;  5A0M B; 
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