1AQA | Genus

Total Genus 21

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	21
sequence length	84
structure length	84
Chain Sequence	KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPDDRSKIA

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Electron transport
source organism	Rattus norvegicus
publication title	Solution structure of reduced microsomal rat cytochrome b5. pubmed doi rcsb
molecule keywords	CYTOCHROME B5
total genus	21
structure length	84
sequence length	84
ec nomenclature
pdb deposition date	1997-07-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.120.10	Alpha Beta	Roll	Flavocytochrome B2; Chain A, domain 1	Cytochrome b5-like heme/steroid binding domain	1aqaA00

1AXXA 1CYOA 1U9UA 1EUEA 1BFXA 1JEXA 1X3XA 1AWPA 1DO9A 1KBIA 3MUSA 1MNYA 1IB7A 1LQXA 1ES1A 4B8NA 3X33A 2KEOA 1U9MA 2IBJA 1B5AA 1IETA 3OZZB 1CXYA 1LDCA 1AQAA 3NERA 1M20A 2OZ0A 4HILA 1LJ0A 1M2MA 1FCBA 4X8YA 1BLVA 1ICCA 3LF5A 3X32A 1NX7A 1MJ4A 1LCOA 1I8CA 1T0GA 1I87A 1M2IA 1B5MA 1AW3A 1SH4A 1B5BA 3X34A 1J0QA 2I96A 1LR6A 1M59A 2I89A 1F03A 2AXXA 1EHBA 1I5UA 1LTDA 3KS0A 1IEUA 4HINA 3X35A 2M33A 1F04A 1HKOA 1J03A 1SOXA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1AXX A;  1CYO A;  1U9U A;  1EUE A;  1BFX A;  1JEX A;  1X3X A;  1AWP A;  1DO9 A;  1KBI A;  3MUS A;  1MNY A;  1IB7 A;  1LQX A;  1ES1 A;  4B8N A;  3X33 A;  2KEO A;  1U9M A;  2IBJ A;  1B5A A;  1IET A;  3OZZ B;  1CXY A;  1LDC A;  1AQA A;  3NER A;  1M20 A;  2OZ0 A;  4HIL A;  1LJ0 A;  1M2M A;  1FCB A;  4X8Y A;  1BLV A;  1ICC A;  3LF5 A;  3X32 A;  1NX7 A;  1MJ4 A;  1LCO A;  1I8C A;  1T0G A;  1I87 A;  1M2I A;  1B5M A;  1AW3 A;  1SH4 A;  1B5B A;  3X34 A;  1J0Q A;  2I96 A;  1LR6 A;  1M59 A;  2I89 A;  1F03 A;  2AXX A;  1EHB A;  1I5U A;  1LTD A;  3KS0 A;  1IEU A;  4HIN A;  3X35 A;  2M33 A;  1F04 A;  1HKO A;  1J03 A;  1SOX A; 
#chains in the Genus database with same CATH topology
 1AXX A;  1CYO A;  1U9U A;  1EUE A;  1BFX A;  1JEX A;  1X3X A;  1AWP A;  1DO9 A;  1KBI A;  3MUS A;  1MNY A;  1IB7 A;  1LQX A;  1ES1 A;  4B8N A;  3X33 A;  2KEO A;  1U9M A;  2IBJ A;  1B5A A;  1IET A;  3OZZ B;  1CXY A;  1LDC A;  1AQA A;  3NER A;  1M20 A;  2OZ0 A;  4HIL A;  1LJ0 A;  1M2M A;  1FCB A;  4X8Y A;  1BLV A;  1ICC A;  3LF5 A;  3X32 A;  1NX7 A;  1MJ4 A;  1LCO A;  1I8C A;  1T0G A;  1I87 A;  1M2I A;  1B5M A;  1AW3 A;  1SH4 A;  1B5B A;  3X34 A;  1J0Q A;  2I96 A;  1LR6 A;  1M59 A;  2I89 A;  1F03 A;  2AXX A;  1EHB A;  1I5U A;  1LTD A;  3KS0 A;  1IEU A;  4HIN A;  3X35 A;  2M33 A;  1F04 A;  1HKO A;  1J03 A;  1SOX A; 
#chains in the Genus database with same CATH homology
 1AXX A;  1CYO A;  1U9U A;  1EUE A;  1BFX A;  1JEX A;  1X3X A;  1AWP A;  1DO9 A;  1KBI A;  3MUS A;  1MNY A;  1IB7 A;  1LQX A;  1ES1 A;  4B8N A;  3X33 A;  2KEO A;  1U9M A;  2IBJ A;  1B5A A;  1IET A;  3OZZ B;  1CXY A;  1LDC A;  1AQA A;  3NER A;  1M20 A;  2OZ0 A;  4HIL A;  1LJ0 A;  1M2M A;  1FCB A;  4X8Y A;  1BLV A;  1ICC A;  3LF5 A;  3X32 A;  1NX7 A;  1MJ4 A;  1LCO A;  1I8C A;  1T0G A;  1I87 A;  1M2I A;  1B5M A;  1AW3 A;  1SH4 A;  1B5B A;  3X34 A;  1J0Q A;  2I96 A;  1LR6 A;  1M59 A;  2I89 A;  1F03 A;  2AXX A;  1EHB A;  1I5U A;  1LTD A;  3KS0 A;  1IEU A;  4HIN A;  3X35 A;  2M33 A;  1F04 A;  1HKO A;  1J03 A;  1SOX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1AQAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations