3LF5A

Structure of human nadh cytochrome b5 oxidoreductase (ncb5or) b5 domain to 1.25a resolution
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
87
structure length
87
Chain Sequence
KGRLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKECLVGRMAIKPAVLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Cytochrome b5 reductase 4
publication title Study of the individual cytochrome b5 and cytochrome b5 reductase domains of Ncb5or reveals a unique heme pocket and a possible role of the CS domain.
pubmed doi rcsb
source organism Homo sapiens
total genus 25
structure length 87
sequence length 87
chains with identical sequence B
ec nomenclature ec 1.6.2.2: Cytochrome-b5 reductase.
pdb deposition date 2010-01-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 3lf5A00
1B5AA 1JEXA 3LF5A 1BFXA 1CYOA 1F03A 1U9MA 4B8NA 1J0QA 4HILA 1SH4A 1NX7A 3X33A 2AXXA 1M59A 1EUEA 1LR6A 1DO9A 3MUSA 1EHBA 1T0GA 1I87A 1M20A 2IBJA 4X8YA 1J03A 1AW3A 1SOXA 2KEOA 1ES1A 1AWPA 1I8CA 1BLVA 2OZ0A 1MNYA 1KBIA 1LTDA 1FCBA 3OZZB 1B5BA 3X35A 1B5MA 1M2IA 1IB7A 3KS0A 1AQAA 1AXXA 1LCOA 1LQXA 1LDCA 2M33A 1M2MA 3NERA 1U9UA 1IETA 1CXYA 1HKOA 1I5UA 1MJ4A 1X3XA 1ICCA 2I96A 4HINA 2I89A 3X32A 3X34A 1F04A 1IEUA 1LJ0A
chains in the Genus database with same CATH superfamily
1B5AA 1JEXA 3LF5A 1BFXA 1CYOA 1F03A 1U9MA 4B8NA 1J0QA 4HILA 1SH4A 1NX7A 3X33A 2AXXA 1M59A 1EUEA 1LR6A 1DO9A 3MUSA 1EHBA 1T0GA 1I87A 1M20A 2IBJA 4X8YA 1J03A 1AW3A 1SOXA 2KEOA 1ES1A 1AWPA 1I8CA 1BLVA 2OZ0A 1MNYA 1KBIA 1LTDA 1FCBA 3OZZB 1B5BA 3X35A 1B5MA 1M2IA 1IB7A 3KS0A 1AQAA 1AXXA 1LCOA 1LQXA 1LDCA 2M33A 1M2MA 3NERA 1U9UA 1IETA 1CXYA 1HKOA 1I5UA 1MJ4A 1X3XA 1ICCA 2I96A 4HINA 2I89A 3X32A 3X34A 1F04A 1IEUA 1LJ0A
chains in the Genus database with same CATH topology
1B5AA 1JEXA 3LF5A 1BFXA 1CYOA 1F03A 1U9MA 4B8NA 1J0QA 4HILA 1SH4A 1NX7A 3X33A 2AXXA 1M59A 1EUEA 1LR6A 1DO9A 3MUSA 1EHBA 1T0GA 1I87A 1M20A 2IBJA 4X8YA 1J03A 1AW3A 1SOXA 2KEOA 1ES1A 1AWPA 1I8CA 1BLVA 2OZ0A 1MNYA 1KBIA 1LTDA 1FCBA 3OZZB 1B5BA 3X35A 1B5MA 1M2IA 1IB7A 3KS0A 1AQAA 1AXXA 1LCOA 1LQXA 1LDCA 2M33A 1M2MA 3NERA 1U9UA 1IETA 1CXYA 1HKOA 1I5UA 1MJ4A 1X3XA 1ICCA 2I96A 4HINA 2I89A 3X32A 3X34A 1F04A 1IEUA 1LJ0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B5A A;  1JEX A;  3LF5 A;  1BFX A;  1CYO A;  1F03 A;  1U9M A;  4B8N A;  1J0Q A;  4HIL A;  1SH4 A;  1NX7 A;  3X33 A;  2AXX A;  1M59 A;  1EUE A;  1LR6 A;  1DO9 A;  3MUS A;  1EHB A;  1T0G A;  1I87 A;  1M20 A;  2IBJ A;  4X8Y A;  1J03 A;  1AW3 A;  1SOX A;  2KEO A;  1ES1 A;  1AWP A;  1I8C A;  1BLV A;  2OZ0 A;  1MNY A;  1KBI A;  1LTD A;  1FCB A;  3OZZ B;  1B5B A;  3X35 A;  1B5M A;  1M2I A;  1IB7 A;  3KS0 A;  1AQA A;  1AXX A;  1LCO A;  1LQX A;  1LDC A;  2M33 A;  1M2M A;  3NER A;  1U9U A;  1IET A;  1CXY A;  1HKO A;  1I5U A;  1MJ4 A;  1X3X A;  1ICC A;  2I96 A;  4HIN A;  2I89 A;  3X32 A;  3X34 A;  1F04 A;  1IEU A;  1LJ0 A; 
#chains in the Genus database with same CATH topology
 1B5A A;  1JEX A;  3LF5 A;  1BFX A;  1CYO A;  1F03 A;  1U9M A;  4B8N A;  1J0Q A;  4HIL A;  1SH4 A;  1NX7 A;  3X33 A;  2AXX A;  1M59 A;  1EUE A;  1LR6 A;  1DO9 A;  3MUS A;  1EHB A;  1T0G A;  1I87 A;  1M20 A;  2IBJ A;  4X8Y A;  1J03 A;  1AW3 A;  1SOX A;  2KEO A;  1ES1 A;  1AWP A;  1I8C A;  1BLV A;  2OZ0 A;  1MNY A;  1KBI A;  1LTD A;  1FCB A;  3OZZ B;  1B5B A;  3X35 A;  1B5M A;  1M2I A;  1IB7 A;  3KS0 A;  1AQA A;  1AXX A;  1LCO A;  1LQX A;  1LDC A;  2M33 A;  1M2M A;  3NER A;  1U9U A;  1IET A;  1CXY A;  1HKO A;  1I5U A;  1MJ4 A;  1X3X A;  1ICC A;  2I96 A;  4HIN A;  2I89 A;  3X32 A;  3X34 A;  1F04 A;  1IEU A;  1LJ0 A; 
#chains in the Genus database with same CATH homology
 1B5A A;  1JEX A;  3LF5 A;  1BFX A;  1CYO A;  1F03 A;  1U9M A;  4B8N A;  1J0Q A;  4HIL A;  1SH4 A;  1NX7 A;  3X33 A;  2AXX A;  1M59 A;  1EUE A;  1LR6 A;  1DO9 A;  3MUS A;  1EHB A;  1T0G A;  1I87 A;  1M20 A;  2IBJ A;  4X8Y A;  1J03 A;  1AW3 A;  1SOX A;  2KEO A;  1ES1 A;  1AWP A;  1I8C A;  1BLV A;  2OZ0 A;  1MNY A;  1KBI A;  1LTD A;  1FCB A;  3OZZ B;  1B5B A;  3X35 A;  1B5M A;  1M2I A;  1IB7 A;  3KS0 A;  1AQA A;  1AXX A;  1LCO A;  1LQX A;  1LDC A;  2M33 A;  1M2M A;  3NER A;  1U9U A;  1IET A;  1CXY A;  1HKO A;  1I5U A;  1MJ4 A;  1X3X A;  1ICC A;  2I96 A;  4HIN A;  2I89 A;  3X32 A;  3X34 A;  1F04 A;  1IEU A;  1LJ0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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