2IBJA

Structure of house fly cytochrome b5
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
86
structure length
86
Chain Sequence
SEDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGELVAEERSN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Comparison of cytochromes b(5) from insects and vertebrates.
pubmed doi rcsb
molecule tags Electron transport
source organism Musca domestica
molecule keywords Cytochrome b5
total genus 26
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2006-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 2ibjA00
1HKOA 2KEOA 1EHBA 1LQXA 1M2MA 1IB7A 1I8CA 1LR6A 1AXXA 2I96A 1J03A 1LDCA 1LCOA 1NX7A 3X34A 3X33A 1AWPA 3MUSA 1F04A 1B5MA 1ES1A 3KS0A 4B8NA 1B5AA 4HILA 1IETA 1SOXA 2AXXA 1FCBA 3NERA 1I87A 1KBIA 2OZ0A 4X8YA 2M33A 1MNYA 1CXYA 1T0GA 1X3XA 2I89A 1IEUA 1MJ4A 1B5BA 1U9MA 3X32A 1EUEA 1U9UA 1F03A 1BLVA 1LJ0A 1CYOA 4HINA 1J0QA 3LF5A 1ICCA 1M20A 1AQAA 1I5UA 1M59A 1LTDA 1BFXA 2IBJA 3X35A 1DO9A 1JEXA 3OZZB 1AW3A 1M2IA 1SH4A
chains in the Genus database with same CATH superfamily
1HKOA 2KEOA 1EHBA 1LQXA 1M2MA 1IB7A 1I8CA 1LR6A 1AXXA 2I96A 1J03A 1LDCA 1LCOA 1NX7A 3X34A 3X33A 1AWPA 3MUSA 1F04A 1B5MA 1ES1A 3KS0A 4B8NA 1B5AA 4HILA 1IETA 1SOXA 2AXXA 1FCBA 3NERA 1I87A 1KBIA 2OZ0A 4X8YA 2M33A 1MNYA 1CXYA 1T0GA 1X3XA 2I89A 1IEUA 1MJ4A 1B5BA 1U9MA 3X32A 1EUEA 1U9UA 1F03A 1BLVA 1LJ0A 1CYOA 4HINA 1J0QA 3LF5A 1ICCA 1M20A 1AQAA 1I5UA 1M59A 1LTDA 1BFXA 2IBJA 3X35A 1DO9A 1JEXA 3OZZB 1AW3A 1M2IA 1SH4A
chains in the Genus database with same CATH topology
1HKOA 2KEOA 1EHBA 1LQXA 1M2MA 1IB7A 1I8CA 1LR6A 1AXXA 2I96A 1J03A 1LDCA 1LCOA 1NX7A 3X34A 3X33A 1AWPA 3MUSA 1F04A 1B5MA 1ES1A 3KS0A 4B8NA 1B5AA 4HILA 1IETA 1SOXA 2AXXA 1FCBA 3NERA 1I87A 1KBIA 2OZ0A 4X8YA 2M33A 1MNYA 1CXYA 1T0GA 1X3XA 2I89A 1IEUA 1MJ4A 1B5BA 1U9MA 3X32A 1EUEA 1U9UA 1F03A 1BLVA 1LJ0A 1CYOA 4HINA 1J0QA 3LF5A 1ICCA 1M20A 1AQAA 1I5UA 1M59A 1LTDA 1BFXA 2IBJA 3X35A 1DO9A 1JEXA 3OZZB 1AW3A 1M2IA 1SH4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HKO A;  2KEO A;  1EHB A;  1LQX A;  1M2M A;  1IB7 A;  1I8C A;  1LR6 A;  1AXX A;  2I96 A;  1J03 A;  1LDC A;  1LCO A;  1NX7 A;  3X34 A;  3X33 A;  1AWP A;  3MUS A;  1F04 A;  1B5M A;  1ES1 A;  3KS0 A;  4B8N A;  1B5A A;  4HIL A;  1IET A;  1SOX A;  2AXX A;  1FCB A;  3NER A;  1I87 A;  1KBI A;  2OZ0 A;  4X8Y A;  2M33 A;  1MNY A;  1CXY A;  1T0G A;  1X3X A;  2I89 A;  1IEU A;  1MJ4 A;  1B5B A;  1U9M A;  3X32 A;  1EUE A;  1U9U A;  1F03 A;  1BLV A;  1LJ0 A;  1CYO A;  4HIN A;  1J0Q A;  3LF5 A;  1ICC A;  1M20 A;  1AQA A;  1I5U A;  1M59 A;  1LTD A;  1BFX A;  2IBJ A;  3X35 A;  1DO9 A;  1JEX A;  3OZZ B;  1AW3 A;  1M2I A;  1SH4 A; 
#chains in the Genus database with same CATH topology
 1HKO A;  2KEO A;  1EHB A;  1LQX A;  1M2M A;  1IB7 A;  1I8C A;  1LR6 A;  1AXX A;  2I96 A;  1J03 A;  1LDC A;  1LCO A;  1NX7 A;  3X34 A;  3X33 A;  1AWP A;  3MUS A;  1F04 A;  1B5M A;  1ES1 A;  3KS0 A;  4B8N A;  1B5A A;  4HIL A;  1IET A;  1SOX A;  2AXX A;  1FCB A;  3NER A;  1I87 A;  1KBI A;  2OZ0 A;  4X8Y A;  2M33 A;  1MNY A;  1CXY A;  1T0G A;  1X3X A;  2I89 A;  1IEU A;  1MJ4 A;  1B5B A;  1U9M A;  3X32 A;  1EUE A;  1U9U A;  1F03 A;  1BLV A;  1LJ0 A;  1CYO A;  4HIN A;  1J0Q A;  3LF5 A;  1ICC A;  1M20 A;  1AQA A;  1I5U A;  1M59 A;  1LTD A;  1BFX A;  2IBJ A;  3X35 A;  1DO9 A;  1JEX A;  3OZZ B;  1AW3 A;  1M2I A;  1SH4 A; 
#chains in the Genus database with same CATH homology
 1HKO A;  2KEO A;  1EHB A;  1LQX A;  1M2M A;  1IB7 A;  1I8C A;  1LR6 A;  1AXX A;  2I96 A;  1J03 A;  1LDC A;  1LCO A;  1NX7 A;  3X34 A;  3X33 A;  1AWP A;  3MUS A;  1F04 A;  1B5M A;  1ES1 A;  3KS0 A;  4B8N A;  1B5A A;  4HIL A;  1IET A;  1SOX A;  2AXX A;  1FCB A;  3NER A;  1I87 A;  1KBI A;  2OZ0 A;  4X8Y A;  2M33 A;  1MNY A;  1CXY A;  1T0G A;  1X3X A;  2I89 A;  1IEU A;  1MJ4 A;  1B5B A;  1U9M A;  3X32 A;  1EUE A;  1U9U A;  1F03 A;  1BLV A;  1LJ0 A;  1CYO A;  4HIN A;  1J0Q A;  3LF5 A;  1ICC A;  1M20 A;  1AQA A;  1I5U A;  1M59 A;  1LTD A;  1BFX A;  2IBJ A;  3X35 A;  1DO9 A;  1JEX A;  3OZZ B;  1AW3 A;  1M2I A;  1SH4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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