1AWPA

Rat outer mitochondrial membrane cytochrome b5
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
86
structure length
86
Chain Sequence
DPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAGADATESFEDLGHSPDAREMLKQYYIGDVHPNDLKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The reduction potential of cytochrome b5 is modulated by its exposed heme edge.
pubmed doi rcsb
molecule tags Electron transport
source organism Rattus norvegicus
molecule keywords CYTOCHROME B5
total genus 23
structure length 86
sequence length 86
chains with identical sequence B
ec nomenclature
pdb deposition date 1997-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1awpA00
1EUEA 1B5MA 1M2MA 1CYOA 2I96A 3X33A 1LCOA 1AWPA 1KBIA 3X32A 3X34A 1SOXA 2KEOA 4HINA 4X8YA 1LTDA 1SH4A 2M33A 4B8NA 1AXXA 1JEXA 1I87A 1EHBA 1FCBA 1CXYA 1X3XA 1AQAA 3LF5A 1MJ4A 1ICCA 1BFXA 1ES1A 1I5UA 1IETA 2IBJA 1J03A 1M2IA 1F04A 1IEUA 3MUSA 1I8CA 1U9UA 3OZZB 1LQXA 1HKOA 3KS0A 1BLVA 2AXXA 1DO9A 1LJ0A 1T0GA 1F03A 2I89A 1LDCA 3NERA 3X35A 1MNYA 1LR6A 1NX7A 1B5BA 1J0QA 1M20A 2OZ0A 1AW3A 1B5AA 1M59A 1U9MA 4HILA 1IB7A
chains in the Genus database with same CATH superfamily
1EUEA 1B5MA 1M2MA 1CYOA 2I96A 3X33A 1LCOA 1AWPA 1KBIA 3X32A 3X34A 1SOXA 2KEOA 4HINA 4X8YA 1LTDA 1SH4A 2M33A 4B8NA 1AXXA 1JEXA 1I87A 1EHBA 1FCBA 1CXYA 1X3XA 1AQAA 3LF5A 1MJ4A 1ICCA 1BFXA 1ES1A 1I5UA 1IETA 2IBJA 1J03A 1M2IA 1F04A 1IEUA 3MUSA 1I8CA 1U9UA 3OZZB 1LQXA 1HKOA 3KS0A 1BLVA 2AXXA 1DO9A 1LJ0A 1T0GA 1F03A 2I89A 1LDCA 3NERA 3X35A 1MNYA 1LR6A 1NX7A 1B5BA 1J0QA 1M20A 2OZ0A 1AW3A 1B5AA 1M59A 1U9MA 4HILA 1IB7A
chains in the Genus database with same CATH topology
1EUEA 1B5MA 1M2MA 1CYOA 2I96A 3X33A 1LCOA 1AWPA 1KBIA 3X32A 3X34A 1SOXA 2KEOA 4HINA 4X8YA 1LTDA 1SH4A 2M33A 4B8NA 1AXXA 1JEXA 1I87A 1EHBA 1FCBA 1CXYA 1X3XA 1AQAA 3LF5A 1MJ4A 1ICCA 1BFXA 1ES1A 1I5UA 1IETA 2IBJA 1J03A 1M2IA 1F04A 1IEUA 3MUSA 1I8CA 1U9UA 3OZZB 1LQXA 1HKOA 3KS0A 1BLVA 2AXXA 1DO9A 1LJ0A 1T0GA 1F03A 2I89A 1LDCA 3NERA 3X35A 1MNYA 1LR6A 1NX7A 1B5BA 1J0QA 1M20A 2OZ0A 1AW3A 1B5AA 1M59A 1U9MA 4HILA 1IB7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EUE A;  1B5M A;  1M2M A;  1CYO A;  2I96 A;  3X33 A;  1LCO A;  1AWP A;  1KBI A;  3X32 A;  3X34 A;  1SOX A;  2KEO A;  4HIN A;  4X8Y A;  1LTD A;  1SH4 A;  2M33 A;  4B8N A;  1AXX A;  1JEX A;  1I87 A;  1EHB A;  1FCB A;  1CXY A;  1X3X A;  1AQA A;  3LF5 A;  1MJ4 A;  1ICC A;  1BFX A;  1ES1 A;  1I5U A;  1IET A;  2IBJ A;  1J03 A;  1M2I A;  1F04 A;  1IEU A;  3MUS A;  1I8C A;  1U9U A;  3OZZ B;  1LQX A;  1HKO A;  3KS0 A;  1BLV A;  2AXX A;  1DO9 A;  1LJ0 A;  1T0G A;  1F03 A;  2I89 A;  1LDC A;  3NER A;  3X35 A;  1MNY A;  1LR6 A;  1NX7 A;  1B5B A;  1J0Q A;  1M20 A;  2OZ0 A;  1AW3 A;  1B5A A;  1M59 A;  1U9M A;  4HIL A;  1IB7 A; 
#chains in the Genus database with same CATH topology
 1EUE A;  1B5M A;  1M2M A;  1CYO A;  2I96 A;  3X33 A;  1LCO A;  1AWP A;  1KBI A;  3X32 A;  3X34 A;  1SOX A;  2KEO A;  4HIN A;  4X8Y A;  1LTD A;  1SH4 A;  2M33 A;  4B8N A;  1AXX A;  1JEX A;  1I87 A;  1EHB A;  1FCB A;  1CXY A;  1X3X A;  1AQA A;  3LF5 A;  1MJ4 A;  1ICC A;  1BFX A;  1ES1 A;  1I5U A;  1IET A;  2IBJ A;  1J03 A;  1M2I A;  1F04 A;  1IEU A;  3MUS A;  1I8C A;  1U9U A;  3OZZ B;  1LQX A;  1HKO A;  3KS0 A;  1BLV A;  2AXX A;  1DO9 A;  1LJ0 A;  1T0G A;  1F03 A;  2I89 A;  1LDC A;  3NER A;  3X35 A;  1MNY A;  1LR6 A;  1NX7 A;  1B5B A;  1J0Q A;  1M20 A;  2OZ0 A;  1AW3 A;  1B5A A;  1M59 A;  1U9M A;  4HIL A;  1IB7 A; 
#chains in the Genus database with same CATH homology
 1EUE A;  1B5M A;  1M2M A;  1CYO A;  2I96 A;  3X33 A;  1LCO A;  1AWP A;  1KBI A;  3X32 A;  3X34 A;  1SOX A;  2KEO A;  4HIN A;  4X8Y A;  1LTD A;  1SH4 A;  2M33 A;  4B8N A;  1AXX A;  1JEX A;  1I87 A;  1EHB A;  1FCB A;  1CXY A;  1X3X A;  1AQA A;  3LF5 A;  1MJ4 A;  1ICC A;  1BFX A;  1ES1 A;  1I5U A;  1IET A;  2IBJ A;  1J03 A;  1M2I A;  1F04 A;  1IEU A;  3MUS A;  1I8C A;  1U9U A;  3OZZ B;  1LQX A;  1HKO A;  3KS0 A;  1BLV A;  2AXX A;  1DO9 A;  1LJ0 A;  1T0G A;  1F03 A;  2I89 A;  1LDC A;  3NER A;  3X35 A;  1MNY A;  1LR6 A;  1NX7 A;  1B5B A;  1J0Q A;  1M20 A;  2OZ0 A;  1AW3 A;  1B5A A;  1M59 A;  1U9M A;  4HIL A;  1IB7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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