1CXYA

Structure and characterization of ectothiorhodospira vacuolata cytochrome b558, a prokaryotic homologue of cytochrome b5
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
81
structure length
81
Chain Sequence
TLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQRYLIGTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and characterization of Ectothiorhodospira vacuolata cytochrome b(558), a prokaryotic homologue of cytochrome b(5).
pubmed doi rcsb
molecule tags Electron transport
source organism Ectothiorhodospira shaposhnikovii
molecule keywords CYTOCHROME B5
total genus 20
structure length 81
sequence length 81
ec nomenclature
pdb deposition date 1999-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1cxyA00
2OZ0A 1MNYA 2I96A 1FCBA 1BFXA 1IEUA 1ES1A 1I8CA 1M2MA 1AW3A 1EHBA 1HKOA 4X8YA 1MJ4A 1IETA 1U9MA 1LR6A 3MUSA 1LQXA 3OZZB 1AXXA 2AXXA 3LF5A 1M2IA 2I89A 1JEXA 1J0QA 1DO9A 1I87A 2IBJA 3X33A 3X35A 2KEOA 1M20A 1X3XA 3X34A 1EUEA 3X32A 1B5BA 3NERA 1J03A 1U9UA 1I5UA 3KS0A 4HILA 1AQAA 1NX7A 4B8NA 2M33A 1F04A 1SOXA 1LCOA 1BLVA 1LDCA 4HINA 1B5MA 1LTDA 1B5AA 1CXYA 1F03A 1KBIA 1LJ0A 1SH4A 1M59A 1CYOA 1T0GA 1IB7A 1AWPA 1ICCA
chains in the Genus database with same CATH superfamily
2OZ0A 1MNYA 2I96A 1FCBA 1BFXA 1IEUA 1ES1A 1I8CA 1M2MA 1AW3A 1EHBA 1HKOA 4X8YA 1MJ4A 1IETA 1U9MA 1LR6A 3MUSA 1LQXA 3OZZB 1AXXA 2AXXA 3LF5A 1M2IA 2I89A 1JEXA 1J0QA 1DO9A 1I87A 2IBJA 3X33A 3X35A 2KEOA 1M20A 1X3XA 3X34A 1EUEA 3X32A 1B5BA 3NERA 1J03A 1U9UA 1I5UA 3KS0A 4HILA 1AQAA 1NX7A 4B8NA 2M33A 1F04A 1SOXA 1LCOA 1BLVA 1LDCA 4HINA 1B5MA 1LTDA 1B5AA 1CXYA 1F03A 1KBIA 1LJ0A 1SH4A 1M59A 1CYOA 1T0GA 1IB7A 1AWPA 1ICCA
chains in the Genus database with same CATH topology
2OZ0A 1MNYA 2I96A 1FCBA 1BFXA 1IEUA 1ES1A 1I8CA 1M2MA 1AW3A 1EHBA 1HKOA 4X8YA 1MJ4A 1IETA 1U9MA 1LR6A 3MUSA 1LQXA 3OZZB 1AXXA 2AXXA 3LF5A 1M2IA 2I89A 1JEXA 1J0QA 1DO9A 1I87A 2IBJA 3X33A 3X35A 2KEOA 1M20A 1X3XA 3X34A 1EUEA 3X32A 1B5BA 3NERA 1J03A 1U9UA 1I5UA 3KS0A 4HILA 1AQAA 1NX7A 4B8NA 2M33A 1F04A 1SOXA 1LCOA 1BLVA 1LDCA 4HINA 1B5MA 1LTDA 1B5AA 1CXYA 1F03A 1KBIA 1LJ0A 1SH4A 1M59A 1CYOA 1T0GA 1IB7A 1AWPA 1ICCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OZ0 A;  1MNY A;  2I96 A;  1FCB A;  1BFX A;  1IEU A;  1ES1 A;  1I8C A;  1M2M A;  1AW3 A;  1EHB A;  1HKO A;  4X8Y A;  1MJ4 A;  1IET A;  1U9M A;  1LR6 A;  3MUS A;  1LQX A;  3OZZ B;  1AXX A;  2AXX A;  3LF5 A;  1M2I A;  2I89 A;  1JEX A;  1J0Q A;  1DO9 A;  1I87 A;  2IBJ A;  3X33 A;  3X35 A;  2KEO A;  1M20 A;  1X3X A;  3X34 A;  1EUE A;  3X32 A;  1B5B A;  3NER A;  1J03 A;  1U9U A;  1I5U A;  3KS0 A;  4HIL A;  1AQA A;  1NX7 A;  4B8N A;  2M33 A;  1F04 A;  1SOX A;  1LCO A;  1BLV A;  1LDC A;  4HIN A;  1B5M A;  1LTD A;  1B5A A;  1CXY A;  1F03 A;  1KBI A;  1LJ0 A;  1SH4 A;  1M59 A;  1CYO A;  1T0G A;  1IB7 A;  1AWP A;  1ICC A; 
#chains in the Genus database with same CATH topology
 2OZ0 A;  1MNY A;  2I96 A;  1FCB A;  1BFX A;  1IEU A;  1ES1 A;  1I8C A;  1M2M A;  1AW3 A;  1EHB A;  1HKO A;  4X8Y A;  1MJ4 A;  1IET A;  1U9M A;  1LR6 A;  3MUS A;  1LQX A;  3OZZ B;  1AXX A;  2AXX A;  3LF5 A;  1M2I A;  2I89 A;  1JEX A;  1J0Q A;  1DO9 A;  1I87 A;  2IBJ A;  3X33 A;  3X35 A;  2KEO A;  1M20 A;  1X3X A;  3X34 A;  1EUE A;  3X32 A;  1B5B A;  3NER A;  1J03 A;  1U9U A;  1I5U A;  3KS0 A;  4HIL A;  1AQA A;  1NX7 A;  4B8N A;  2M33 A;  1F04 A;  1SOX A;  1LCO A;  1BLV A;  1LDC A;  4HIN A;  1B5M A;  1LTD A;  1B5A A;  1CXY A;  1F03 A;  1KBI A;  1LJ0 A;  1SH4 A;  1M59 A;  1CYO A;  1T0G A;  1IB7 A;  1AWP A;  1ICC A; 
#chains in the Genus database with same CATH homology
 2OZ0 A;  1MNY A;  2I96 A;  1FCB A;  1BFX A;  1IEU A;  1ES1 A;  1I8C A;  1M2M A;  1AW3 A;  1EHB A;  1HKO A;  4X8Y A;  1MJ4 A;  1IET A;  1U9M A;  1LR6 A;  3MUS A;  1LQX A;  3OZZ B;  1AXX A;  2AXX A;  3LF5 A;  1M2I A;  2I89 A;  1JEX A;  1J0Q A;  1DO9 A;  1I87 A;  2IBJ A;  3X33 A;  3X35 A;  2KEO A;  1M20 A;  1X3X A;  3X34 A;  1EUE A;  3X32 A;  1B5B A;  3NER A;  1J03 A;  1U9U A;  1I5U A;  3KS0 A;  4HIL A;  1AQA A;  1NX7 A;  4B8N A;  2M33 A;  1F04 A;  1SOX A;  1LCO A;  1BLV A;  1LDC A;  4HIN A;  1B5M A;  1LTD A;  1B5A A;  1CXY A;  1F03 A;  1KBI A;  1LJ0 A;  1SH4 A;  1M59 A;  1CYO A;  1T0G A;  1IB7 A;  1AWP A;  1ICC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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