1MJ4A

Crystal structure analysis of the cytochrome b5 domain of human sulfite oxidase
Total Genus 24
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
80
structure length
79
Chain Sequence
STHIYTKEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQSHVRELLAQYKIGEL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title The 1.2 A structure of the human sulfite oxidase cytochrome b(5) domain.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Homo sapiens
molecule keywords sulfite oxidase
total genus 24
structure length 79
sequence length 80
ec nomenclature ec 1.8.3.1: Sulfite oxidase.
pdb deposition date 2002-08-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1mj4A00
2KEOA 1LCOA 3X35A 1KBIA 3MUSA 1EUEA 1CYOA 1J0QA 1NX7A 1LQXA 2IBJA 1ICCA 3NERA 4HILA 1F03A 1CXYA 2AXXA 2OZ0A 1I8CA 1DO9A 1I87A 1IEUA 1FCBA 1X3XA 1ES1A 1JEXA 1LDCA 1SOXA 1T0GA 3KS0A 3X33A 1AXXA 1M2MA 1J03A 1BFXA 2I96A 1MNYA 1BLVA 1I5UA 1LR6A 4X8YA 1EHBA 1LTDA 1B5MA 3X34A 1M2IA 1M20A 4B8NA 1MJ4A 1AW3A 3OZZB 3LF5A 1U9MA 1AWPA 1M59A 3X32A 4HINA 1F04A 1IETA 1IB7A 1SH4A 1U9UA 1B5AA 1AQAA 2I89A 2M33A 1HKOA 1LJ0A 1B5BA
chains in the Genus database with same CATH superfamily
2KEOA 1LCOA 3X35A 1KBIA 3MUSA 1EUEA 1CYOA 1J0QA 1NX7A 1LQXA 2IBJA 1ICCA 3NERA 4HILA 1F03A 1CXYA 2AXXA 2OZ0A 1I8CA 1DO9A 1I87A 1IEUA 1FCBA 1X3XA 1ES1A 1JEXA 1LDCA 1SOXA 1T0GA 3KS0A 3X33A 1AXXA 1M2MA 1J03A 1BFXA 2I96A 1MNYA 1BLVA 1I5UA 1LR6A 4X8YA 1EHBA 1LTDA 1B5MA 3X34A 1M2IA 1M20A 4B8NA 1MJ4A 1AW3A 3OZZB 3LF5A 1U9MA 1AWPA 1M59A 3X32A 4HINA 1F04A 1IETA 1IB7A 1SH4A 1U9UA 1B5AA 1AQAA 2I89A 2M33A 1HKOA 1LJ0A 1B5BA
chains in the Genus database with same CATH topology
2KEOA 1LCOA 3X35A 1KBIA 3MUSA 1EUEA 1CYOA 1J0QA 1NX7A 1LQXA 2IBJA 1ICCA 3NERA 4HILA 1F03A 1CXYA 2AXXA 2OZ0A 1I8CA 1DO9A 1I87A 1IEUA 1FCBA 1X3XA 1ES1A 1JEXA 1LDCA 1SOXA 1T0GA 3KS0A 3X33A 1AXXA 1M2MA 1J03A 1BFXA 2I96A 1MNYA 1BLVA 1I5UA 1LR6A 4X8YA 1EHBA 1LTDA 1B5MA 3X34A 1M2IA 1M20A 4B8NA 1MJ4A 1AW3A 3OZZB 3LF5A 1U9MA 1AWPA 1M59A 3X32A 4HINA 1F04A 1IETA 1IB7A 1SH4A 1U9UA 1B5AA 1AQAA 2I89A 2M33A 1HKOA 1LJ0A 1B5BA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2KEO A;  1LCO A;  3X35 A;  1KBI A;  3MUS A;  1EUE A;  1CYO A;  1J0Q A;  1NX7 A;  1LQX A;  2IBJ A;  1ICC A;  3NER A;  4HIL A;  1F03 A;  1CXY A;  2AXX A;  2OZ0 A;  1I8C A;  1DO9 A;  1I87 A;  1IEU A;  1FCB A;  1X3X A;  1ES1 A;  1JEX A;  1LDC A;  1SOX A;  1T0G A;  3KS0 A;  3X33 A;  1AXX A;  1M2M A;  1J03 A;  1BFX A;  2I96 A;  1MNY A;  1BLV A;  1I5U A;  1LR6 A;  4X8Y A;  1EHB A;  1LTD A;  1B5M A;  3X34 A;  1M2I A;  1M20 A;  4B8N A;  1MJ4 A;  1AW3 A;  3OZZ B;  3LF5 A;  1U9M A;  1AWP A;  1M59 A;  3X32 A;  4HIN A;  1F04 A;  1IET A;  1IB7 A;  1SH4 A;  1U9U A;  1B5A A;  1AQA A;  2I89 A;  2M33 A;  1HKO A;  1LJ0 A;  1B5B A; 
#chains in the Genus database with same CATH topology
 2KEO A;  1LCO A;  3X35 A;  1KBI A;  3MUS A;  1EUE A;  1CYO A;  1J0Q A;  1NX7 A;  1LQX A;  2IBJ A;  1ICC A;  3NER A;  4HIL A;  1F03 A;  1CXY A;  2AXX A;  2OZ0 A;  1I8C A;  1DO9 A;  1I87 A;  1IEU A;  1FCB A;  1X3X A;  1ES1 A;  1JEX A;  1LDC A;  1SOX A;  1T0G A;  3KS0 A;  3X33 A;  1AXX A;  1M2M A;  1J03 A;  1BFX A;  2I96 A;  1MNY A;  1BLV A;  1I5U A;  1LR6 A;  4X8Y A;  1EHB A;  1LTD A;  1B5M A;  3X34 A;  1M2I A;  1M20 A;  4B8N A;  1MJ4 A;  1AW3 A;  3OZZ B;  3LF5 A;  1U9M A;  1AWP A;  1M59 A;  3X32 A;  4HIN A;  1F04 A;  1IET A;  1IB7 A;  1SH4 A;  1U9U A;  1B5A A;  1AQA A;  2I89 A;  2M33 A;  1HKO A;  1LJ0 A;  1B5B A; 
#chains in the Genus database with same CATH homology
 2KEO A;  1LCO A;  3X35 A;  1KBI A;  3MUS A;  1EUE A;  1CYO A;  1J0Q A;  1NX7 A;  1LQX A;  2IBJ A;  1ICC A;  3NER A;  4HIL A;  1F03 A;  1CXY A;  2AXX A;  2OZ0 A;  1I8C A;  1DO9 A;  1I87 A;  1IEU A;  1FCB A;  1X3X A;  1ES1 A;  1JEX A;  1LDC A;  1SOX A;  1T0G A;  3KS0 A;  3X33 A;  1AXX A;  1M2M A;  1J03 A;  1BFX A;  2I96 A;  1MNY A;  1BLV A;  1I5U A;  1LR6 A;  4X8Y A;  1EHB A;  1LTD A;  1B5M A;  3X34 A;  1M2I A;  1M20 A;  4B8N A;  1MJ4 A;  1AW3 A;  3OZZ B;  3LF5 A;  1U9M A;  1AWP A;  1M59 A;  3X32 A;  4HIN A;  1F04 A;  1IET A;  1IB7 A;  1SH4 A;  1U9U A;  1B5A A;  1AQA A;  2I89 A;  2M33 A;  1HKO A;  1LJ0 A;  1B5B A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite