3NERA

Structure of human type b cytochrome b5
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
90
structure length
90
Chain Sequence
GQEVETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPSDLKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Accommodating a Non-Conservative Internal Mutation by Water-Mediated Hydrogen-Bonding Between beta-Sheet Strands: A Comparison of Human and Rat Type B (Mitochondrial) Cytochrome b5
pubmed doi rcsb
molecule tags Electron transport
source organism Homo sapiens
molecule keywords Cytochrome b5 type B
total genus 24
structure length 90
sequence length 90
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 3nerA00
1CXYA 1FCBA 1EHBA 1LCOA 1KBIA 3KS0A 1M2MA 1AXXA 1MJ4A 1T0GA 1ES1A 4X8YA 1SOXA 1I87A 1AWPA 3OZZB 1IETA 1LQXA 2I96A 4B8NA 1B5AA 1NX7A 1AQAA 2AXXA 3X32A 1LJ0A 4HINA 1I5UA 1J03A 1M2IA 1JEXA 1EUEA 3NERA 1M59A 1X3XA 2M33A 2I89A 1MNYA 2OZ0A 1LR6A 3X35A 1CYOA 1DO9A 1B5BA 1F03A 2KEOA 1J0QA 1U9MA 3LF5A 1SH4A 1BFXA 1I8CA 1IEUA 3X34A 1F04A 1ICCA 4HILA 1M20A 3X33A 1LDCA 1HKOA 1IB7A 1AW3A 1LTDA 2IBJA 1BLVA 1B5MA 3MUSA 1U9UA
chains in the Genus database with same CATH superfamily
1CXYA 1FCBA 1EHBA 1LCOA 1KBIA 3KS0A 1M2MA 1AXXA 1MJ4A 1T0GA 1ES1A 4X8YA 1SOXA 1I87A 1AWPA 3OZZB 1IETA 1LQXA 2I96A 4B8NA 1B5AA 1NX7A 1AQAA 2AXXA 3X32A 1LJ0A 4HINA 1I5UA 1J03A 1M2IA 1JEXA 1EUEA 3NERA 1M59A 1X3XA 2M33A 2I89A 1MNYA 2OZ0A 1LR6A 3X35A 1CYOA 1DO9A 1B5BA 1F03A 2KEOA 1J0QA 1U9MA 3LF5A 1SH4A 1BFXA 1I8CA 1IEUA 3X34A 1F04A 1ICCA 4HILA 1M20A 3X33A 1LDCA 1HKOA 1IB7A 1AW3A 1LTDA 2IBJA 1BLVA 1B5MA 3MUSA 1U9UA
chains in the Genus database with same CATH topology
1CXYA 1FCBA 1EHBA 1LCOA 1KBIA 3KS0A 1M2MA 1AXXA 1MJ4A 1T0GA 1ES1A 4X8YA 1SOXA 1I87A 1AWPA 3OZZB 1IETA 1LQXA 2I96A 4B8NA 1B5AA 1NX7A 1AQAA 2AXXA 3X32A 1LJ0A 4HINA 1I5UA 1J03A 1M2IA 1JEXA 1EUEA 3NERA 1M59A 1X3XA 2M33A 2I89A 1MNYA 2OZ0A 1LR6A 3X35A 1CYOA 1DO9A 1B5BA 1F03A 2KEOA 1J0QA 1U9MA 3LF5A 1SH4A 1BFXA 1I8CA 1IEUA 3X34A 1F04A 1ICCA 4HILA 1M20A 3X33A 1LDCA 1HKOA 1IB7A 1AW3A 1LTDA 2IBJA 1BLVA 1B5MA 3MUSA 1U9UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CXY A;  1FCB A;  1EHB A;  1LCO A;  1KBI A;  3KS0 A;  1M2M A;  1AXX A;  1MJ4 A;  1T0G A;  1ES1 A;  4X8Y A;  1SOX A;  1I87 A;  1AWP A;  3OZZ B;  1IET A;  1LQX A;  2I96 A;  4B8N A;  1B5A A;  1NX7 A;  1AQA A;  2AXX A;  3X32 A;  1LJ0 A;  4HIN A;  1I5U A;  1J03 A;  1M2I A;  1JEX A;  1EUE A;  3NER A;  1M59 A;  1X3X A;  2M33 A;  2I89 A;  1MNY A;  2OZ0 A;  1LR6 A;  3X35 A;  1CYO A;  1DO9 A;  1B5B A;  1F03 A;  2KEO A;  1J0Q A;  1U9M A;  3LF5 A;  1SH4 A;  1BFX A;  1I8C A;  1IEU A;  3X34 A;  1F04 A;  1ICC A;  4HIL A;  1M20 A;  3X33 A;  1LDC A;  1HKO A;  1IB7 A;  1AW3 A;  1LTD A;  2IBJ A;  1BLV A;  1B5M A;  3MUS A;  1U9U A; 
#chains in the Genus database with same CATH topology
 1CXY A;  1FCB A;  1EHB A;  1LCO A;  1KBI A;  3KS0 A;  1M2M A;  1AXX A;  1MJ4 A;  1T0G A;  1ES1 A;  4X8Y A;  1SOX A;  1I87 A;  1AWP A;  3OZZ B;  1IET A;  1LQX A;  2I96 A;  4B8N A;  1B5A A;  1NX7 A;  1AQA A;  2AXX A;  3X32 A;  1LJ0 A;  4HIN A;  1I5U A;  1J03 A;  1M2I A;  1JEX A;  1EUE A;  3NER A;  1M59 A;  1X3X A;  2M33 A;  2I89 A;  1MNY A;  2OZ0 A;  1LR6 A;  3X35 A;  1CYO A;  1DO9 A;  1B5B A;  1F03 A;  2KEO A;  1J0Q A;  1U9M A;  3LF5 A;  1SH4 A;  1BFX A;  1I8C A;  1IEU A;  3X34 A;  1F04 A;  1ICC A;  4HIL A;  1M20 A;  3X33 A;  1LDC A;  1HKO A;  1IB7 A;  1AW3 A;  1LTD A;  2IBJ A;  1BLV A;  1B5M A;  3MUS A;  1U9U A; 
#chains in the Genus database with same CATH homology
 1CXY A;  1FCB A;  1EHB A;  1LCO A;  1KBI A;  3KS0 A;  1M2M A;  1AXX A;  1MJ4 A;  1T0G A;  1ES1 A;  4X8Y A;  1SOX A;  1I87 A;  1AWP A;  3OZZ B;  1IET A;  1LQX A;  2I96 A;  4B8N A;  1B5A A;  1NX7 A;  1AQA A;  2AXX A;  3X32 A;  1LJ0 A;  4HIN A;  1I5U A;  1J03 A;  1M2I A;  1JEX A;  1EUE A;  3NER A;  1M59 A;  1X3X A;  2M33 A;  2I89 A;  1MNY A;  2OZ0 A;  1LR6 A;  3X35 A;  1CYO A;  1DO9 A;  1B5B A;  1F03 A;  2KEO A;  1J0Q A;  1U9M A;  3LF5 A;  1SH4 A;  1BFX A;  1I8C A;  1IEU A;  3X34 A;  1F04 A;  1ICC A;  4HIL A;  1M20 A;  3X33 A;  1LDC A;  1HKO A;  1IB7 A;  1AW3 A;  1LTD A;  2IBJ A;  1BLV A;  1B5M A;  3MUS A;  1U9U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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