1LQXA

Crystal structure of v45e mutant of cytochrome b5
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
82
structure length
82
Chain Sequence
AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEELREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords cytochrome b5
publication title Structures of V45E and V45Y mutants and structure comparison of a variety of cytochrome b5 mutants.
pubmed doi rcsb
source organism Bos taurus
total genus 23
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2002-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1lqxA00
1I8CA 4HILA 2AXXA 1SH4A 1LCOA 3LF5A 1IEUA 1I5UA 3X35A 1U9UA 1NX7A 1LR6A 1IETA 1EHBA 2KEOA 1J03A 2I89A 1T0GA 2I96A 3MUSA 1CXYA 3X32A 1ICCA 3OZZB 1BFXA 3KS0A 4X8YA 1U9MA 1B5AA 1JEXA 1KBIA 1ES1A 1MJ4A 1CYOA 3NERA 1AQAA 2M33A 1AXXA 1M20A 1J0QA 1FCBA 1B5BA 1F04A 1HKOA 1LDCA 3X34A 1DO9A 1I87A 1LJ0A 1SOXA 2IBJA 1M2MA 1LQXA 1M59A 3X33A 2OZ0A 1M2IA 1EUEA 1LTDA 1B5MA 1F03A 1MNYA 1IB7A 4B8NA 1AW3A 1X3XA 1BLVA 1AWPA 4HINA
chains in the Genus database with same CATH superfamily
1I8CA 4HILA 2AXXA 1SH4A 1LCOA 3LF5A 1IEUA 1I5UA 3X35A 1U9UA 1NX7A 1LR6A 1IETA 1EHBA 2KEOA 1J03A 2I89A 1T0GA 2I96A 3MUSA 1CXYA 3X32A 1ICCA 3OZZB 1BFXA 3KS0A 4X8YA 1U9MA 1B5AA 1JEXA 1KBIA 1ES1A 1MJ4A 1CYOA 3NERA 1AQAA 2M33A 1AXXA 1M20A 1J0QA 1FCBA 1B5BA 1F04A 1HKOA 1LDCA 3X34A 1DO9A 1I87A 1LJ0A 1SOXA 2IBJA 1M2MA 1LQXA 1M59A 3X33A 2OZ0A 1M2IA 1EUEA 1LTDA 1B5MA 1F03A 1MNYA 1IB7A 4B8NA 1AW3A 1X3XA 1BLVA 1AWPA 4HINA
chains in the Genus database with same CATH topology
1I8CA 4HILA 2AXXA 1SH4A 1LCOA 3LF5A 1IEUA 1I5UA 3X35A 1U9UA 1NX7A 1LR6A 1IETA 1EHBA 2KEOA 1J03A 2I89A 1T0GA 2I96A 3MUSA 1CXYA 3X32A 1ICCA 3OZZB 1BFXA 3KS0A 4X8YA 1U9MA 1B5AA 1JEXA 1KBIA 1ES1A 1MJ4A 1CYOA 3NERA 1AQAA 2M33A 1AXXA 1M20A 1J0QA 1FCBA 1B5BA 1F04A 1HKOA 1LDCA 3X34A 1DO9A 1I87A 1LJ0A 1SOXA 2IBJA 1M2MA 1LQXA 1M59A 3X33A 2OZ0A 1M2IA 1EUEA 1LTDA 1B5MA 1F03A 1MNYA 1IB7A 4B8NA 1AW3A 1X3XA 1BLVA 1AWPA 4HINA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I8C A;  4HIL A;  2AXX A;  1SH4 A;  1LCO A;  3LF5 A;  1IEU A;  1I5U A;  3X35 A;  1U9U A;  1NX7 A;  1LR6 A;  1IET A;  1EHB A;  2KEO A;  1J03 A;  2I89 A;  1T0G A;  2I96 A;  3MUS A;  1CXY A;  3X32 A;  1ICC A;  3OZZ B;  1BFX A;  3KS0 A;  4X8Y A;  1U9M A;  1B5A A;  1JEX A;  1KBI A;  1ES1 A;  1MJ4 A;  1CYO A;  3NER A;  1AQA A;  2M33 A;  1AXX A;  1M20 A;  1J0Q A;  1FCB A;  1B5B A;  1F04 A;  1HKO A;  1LDC A;  3X34 A;  1DO9 A;  1I87 A;  1LJ0 A;  1SOX A;  2IBJ A;  1M2M A;  1LQX A;  1M59 A;  3X33 A;  2OZ0 A;  1M2I A;  1EUE A;  1LTD A;  1B5M A;  1F03 A;  1MNY A;  1IB7 A;  4B8N A;  1AW3 A;  1X3X A;  1BLV A;  1AWP A;  4HIN A; 
#chains in the Genus database with same CATH topology
 1I8C A;  4HIL A;  2AXX A;  1SH4 A;  1LCO A;  3LF5 A;  1IEU A;  1I5U A;  3X35 A;  1U9U A;  1NX7 A;  1LR6 A;  1IET A;  1EHB A;  2KEO A;  1J03 A;  2I89 A;  1T0G A;  2I96 A;  3MUS A;  1CXY A;  3X32 A;  1ICC A;  3OZZ B;  1BFX A;  3KS0 A;  4X8Y A;  1U9M A;  1B5A A;  1JEX A;  1KBI A;  1ES1 A;  1MJ4 A;  1CYO A;  3NER A;  1AQA A;  2M33 A;  1AXX A;  1M20 A;  1J0Q A;  1FCB A;  1B5B A;  1F04 A;  1HKO A;  1LDC A;  3X34 A;  1DO9 A;  1I87 A;  1LJ0 A;  1SOX A;  2IBJ A;  1M2M A;  1LQX A;  1M59 A;  3X33 A;  2OZ0 A;  1M2I A;  1EUE A;  1LTD A;  1B5M A;  1F03 A;  1MNY A;  1IB7 A;  4B8N A;  1AW3 A;  1X3X A;  1BLV A;  1AWP A;  4HIN A; 
#chains in the Genus database with same CATH homology
 1I8C A;  4HIL A;  2AXX A;  1SH4 A;  1LCO A;  3LF5 A;  1IEU A;  1I5U A;  3X35 A;  1U9U A;  1NX7 A;  1LR6 A;  1IET A;  1EHB A;  2KEO A;  1J03 A;  2I89 A;  1T0G A;  2I96 A;  3MUS A;  1CXY A;  3X32 A;  1ICC A;  3OZZ B;  1BFX A;  3KS0 A;  4X8Y A;  1U9M A;  1B5A A;  1JEX A;  1KBI A;  1ES1 A;  1MJ4 A;  1CYO A;  3NER A;  1AQA A;  2M33 A;  1AXX A;  1M20 A;  1J0Q A;  1FCB A;  1B5B A;  1F04 A;  1HKO A;  1LDC A;  3X34 A;  1DO9 A;  1I87 A;  1LJ0 A;  1SOX A;  2IBJ A;  1M2M A;  1LQX A;  1M59 A;  3X33 A;  2OZ0 A;  1M2I A;  1EUE A;  1LTD A;  1B5M A;  1F03 A;  1MNY A;  1IB7 A;  4B8N A;  1AW3 A;  1X3X A;  1BLV A;  1AWP A;  4HIN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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