1AW3A

The solution nmr structure of oxidized rat microsomal cytochrome b5, minimized average structure
Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
94
structure length
94
Chain Sequence
DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPDDRSKIAKPSETL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS4 (75-79)S1 (6-7)AH1 (9-14)O2 (14-16)TIV1 (17-20)S2 (22-25)TI1 (32-35)AH3 (54-61)TIV2 (24-27)S3 (28-31)TI2 (36-39)AH2 (43-49)TIV6 (49-52)AH4 (65-73)AH5 (81-85)O1 (1-3)TIV5 (39-42)Updating...
connected with : NaN
molecule tags Electron transport
source organism Rattus norvegicus
publication title The solution structure of oxidized rat microsomal cytochrome b5.
pubmed doi rcsb
molecule keywords CYTOCHROME B5
total genus 19
structure length 94
sequence length 94
ec nomenclature
pdb deposition date 1997-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1aw3A00
1KBIA 1IEUA 4HILA 1ICCA 3OZZB 1CYOA 1I87A 1SOXA 4X8YA 1BLVA 2AXXA 1SH4A 4HINA 1B5BA 1IB7A 1LQXA 1M2IA 1HKOA 2I96A 1LJ0A 1U9UA 3LF5A 1T0GA 3KS0A 2KEOA 1LDCA 1X3XA 1F04A 1LR6A 1MNYA 1JEXA 1I8CA 1ES1A 1M20A 3X32A 1FCBA 1B5AA 1LCOA 1M59A 1U9MA 1F03A 1IETA 1J03A 1B5MA 3MUSA 3X33A 1M2MA 3X35A 2I89A 1AWPA 1CXYA 1NX7A 3X34A 3NERA 4B8NA 1I5UA 1EHBA 1BFXA 1AW3A 2OZ0A 1LTDA 1J0QA 1AXXA 2M33A 2IBJA 1DO9A 1MJ4A 1EUEA 1AQAA
chains in the Genus database with same CATH superfamily
1KBIA 1IEUA 4HILA 1ICCA 3OZZB 1CYOA 1I87A 1SOXA 4X8YA 1BLVA 2AXXA 1SH4A 4HINA 1B5BA 1IB7A 1LQXA 1M2IA 1HKOA 2I96A 1LJ0A 1U9UA 3LF5A 1T0GA 3KS0A 2KEOA 1LDCA 1X3XA 1F04A 1LR6A 1MNYA 1JEXA 1I8CA 1ES1A 1M20A 3X32A 1FCBA 1B5AA 1LCOA 1M59A 1U9MA 1F03A 1IETA 1J03A 1B5MA 3MUSA 3X33A 1M2MA 3X35A 2I89A 1AWPA 1CXYA 1NX7A 3X34A 3NERA 4B8NA 1I5UA 1EHBA 1BFXA 1AW3A 2OZ0A 1LTDA 1J0QA 1AXXA 2M33A 2IBJA 1DO9A 1MJ4A 1EUEA 1AQAA
chains in the Genus database with same CATH topology
1KBIA 1IEUA 4HILA 1ICCA 3OZZB 1CYOA 1I87A 1SOXA 4X8YA 1BLVA 2AXXA 1SH4A 4HINA 1B5BA 1IB7A 1LQXA 1M2IA 1HKOA 2I96A 1LJ0A 1U9UA 3LF5A 1T0GA 3KS0A 2KEOA 1LDCA 1X3XA 1F04A 1LR6A 1MNYA 1JEXA 1I8CA 1ES1A 1M20A 3X32A 1FCBA 1B5AA 1LCOA 1M59A 1U9MA 1F03A 1IETA 1J03A 1B5MA 3MUSA 3X33A 1M2MA 3X35A 2I89A 1AWPA 1CXYA 1NX7A 3X34A 3NERA 4B8NA 1I5UA 1EHBA 1BFXA 1AW3A 2OZ0A 1LTDA 1J0QA 1AXXA 2M33A 2IBJA 1DO9A 1MJ4A 1EUEA 1AQAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KBI A;  1IEU A;  4HIL A;  1ICC A;  3OZZ B;  1CYO A;  1I87 A;  1SOX A;  4X8Y A;  1BLV A;  2AXX A;  1SH4 A;  4HIN A;  1B5B A;  1IB7 A;  1LQX A;  1M2I A;  1HKO A;  2I96 A;  1LJ0 A;  1U9U A;  3LF5 A;  1T0G A;  3KS0 A;  2KEO A;  1LDC A;  1X3X A;  1F04 A;  1LR6 A;  1MNY A;  1JEX A;  1I8C A;  1ES1 A;  1M20 A;  3X32 A;  1FCB A;  1B5A A;  1LCO A;  1M59 A;  1U9M A;  1F03 A;  1IET A;  1J03 A;  1B5M A;  3MUS A;  3X33 A;  1M2M A;  3X35 A;  2I89 A;  1AWP A;  1CXY A;  1NX7 A;  3X34 A;  3NER A;  4B8N A;  1I5U A;  1EHB A;  1BFX A;  1AW3 A;  2OZ0 A;  1LTD A;  1J0Q A;  1AXX A;  2M33 A;  2IBJ A;  1DO9 A;  1MJ4 A;  1EUE A;  1AQA A; 
#chains in the Genus database with same CATH topology
 1KBI A;  1IEU A;  4HIL A;  1ICC A;  3OZZ B;  1CYO A;  1I87 A;  1SOX A;  4X8Y A;  1BLV A;  2AXX A;  1SH4 A;  4HIN A;  1B5B A;  1IB7 A;  1LQX A;  1M2I A;  1HKO A;  2I96 A;  1LJ0 A;  1U9U A;  3LF5 A;  1T0G A;  3KS0 A;  2KEO A;  1LDC A;  1X3X A;  1F04 A;  1LR6 A;  1MNY A;  1JEX A;  1I8C A;  1ES1 A;  1M20 A;  3X32 A;  1FCB A;  1B5A A;  1LCO A;  1M59 A;  1U9M A;  1F03 A;  1IET A;  1J03 A;  1B5M A;  3MUS A;  3X33 A;  1M2M A;  3X35 A;  2I89 A;  1AWP A;  1CXY A;  1NX7 A;  3X34 A;  3NER A;  4B8N A;  1I5U A;  1EHB A;  1BFX A;  1AW3 A;  2OZ0 A;  1LTD A;  1J0Q A;  1AXX A;  2M33 A;  2IBJ A;  1DO9 A;  1MJ4 A;  1EUE A;  1AQA A; 
#chains in the Genus database with same CATH homology
 1KBI A;  1IEU A;  4HIL A;  1ICC A;  3OZZ B;  1CYO A;  1I87 A;  1SOX A;  4X8Y A;  1BLV A;  2AXX A;  1SH4 A;  4HIN A;  1B5B A;  1IB7 A;  1LQX A;  1M2I A;  1HKO A;  2I96 A;  1LJ0 A;  1U9U A;  3LF5 A;  1T0G A;  3KS0 A;  2KEO A;  1LDC A;  1X3X A;  1F04 A;  1LR6 A;  1MNY A;  1JEX A;  1I8C A;  1ES1 A;  1M20 A;  3X32 A;  1FCB A;  1B5A A;  1LCO A;  1M59 A;  1U9M A;  1F03 A;  1IET A;  1J03 A;  1B5M A;  3MUS A;  3X33 A;  1M2M A;  3X35 A;  2I89 A;  1AWP A;  1CXY A;  1NX7 A;  3X34 A;  3NER A;  4B8N A;  1I5U A;  1EHB A;  1BFX A;  1AW3 A;  2OZ0 A;  1LTD A;  1J0Q A;  1AXX A;  2M33 A;  2IBJ A;  1DO9 A;  1MJ4 A;  1EUE A;  1AQA A; 
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similar chains in the pdb database (?% sequence similarity)

 
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