1AWP | Genus

Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	23
sequence length	86
structure length	86
Chain Sequence	DPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEELLLEQAGADATESFEDLGHSPDAREMLKQYYIGDVHPNDLKP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 86 atoms

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86 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The reduction potential of cytochrome b5 is modulated by its exposed heme edge. pubmed doi rcsb
molecule keywords	CYTOCHROME B5
molecule tags	Electron transport
source organism	Rattus norvegicus
total genus	23
structure length	86
sequence length	86
chains with identical sequence	B
ec nomenclature
pdb deposition date	1997-10-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.120.10	Alpha Beta	Roll	Flavocytochrome B2; Chain A, domain 1	Cytochrome b5-like heme/steroid binding domain	1awpA00

1B5MA 3LF5A 1T0GA 2AXXA 1M2MA 3MUSA 1F04A 1M2IA 1B5BA 1HKOA 1CXYA 4HINA 1DO9A 1AQAA 1FCBA 1U9UA 1NX7A 1J03A 1IB7A 3X35A 3X34A 1F03A 1CYOA 1AWPA 1LR6A 4HILA 4X8YA 1LDCA 3NERA 2KEOA 1I87A 1IETA 1ES1A 1AW3A 1B5AA 2I89A 1J0QA 1LCOA 1MNYA 3OZZB 2I96A 1LTDA 1LQXA 1IEUA 1SOXA 2M33A 3KS0A 1JEXA 1EUEA 1I5UA 1MJ4A 1BLVA 1U9MA 1M20A 1SH4A 1X3XA 1KBIA 2OZ0A 1I8CA 3X32A 1M59A 1AXXA 3X33A 4B8NA 1EHBA 1BFXA 2IBJA 1LJ0A 1ICCA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1B5M A;  3LF5 A;  1T0G A;  2AXX A;  1M2M A;  3MUS A;  1F04 A;  1M2I A;  1B5B A;  1HKO A;  1CXY A;  4HIN A;  1DO9 A;  1AQA A;  1FCB A;  1U9U A;  1NX7 A;  1J03 A;  1IB7 A;  3X35 A;  3X34 A;  1F03 A;  1CYO A;  1AWP A;  1LR6 A;  4HIL A;  4X8Y A;  1LDC A;  3NER A;  2KEO A;  1I87 A;  1IET A;  1ES1 A;  1AW3 A;  1B5A A;  2I89 A;  1J0Q A;  1LCO A;  1MNY A;  3OZZ B;  2I96 A;  1LTD A;  1LQX A;  1IEU A;  1SOX A;  2M33 A;  3KS0 A;  1JEX A;  1EUE A;  1I5U A;  1MJ4 A;  1BLV A;  1U9M A;  1M20 A;  1SH4 A;  1X3X A;  1KBI A;  2OZ0 A;  1I8C A;  3X32 A;  1M59 A;  1AXX A;  3X33 A;  4B8N A;  1EHB A;  1BFX A;  2IBJ A;  1LJ0 A;  1ICC A; 
#chains in the Genus database with same CATH topology
 1B5M A;  3LF5 A;  1T0G A;  2AXX A;  1M2M A;  3MUS A;  1F04 A;  1M2I A;  1B5B A;  1HKO A;  1CXY A;  4HIN A;  1DO9 A;  1AQA A;  1FCB A;  1U9U A;  1NX7 A;  1J03 A;  1IB7 A;  3X35 A;  3X34 A;  1F03 A;  1CYO A;  1AWP A;  1LR6 A;  4HIL A;  4X8Y A;  1LDC A;  3NER A;  2KEO A;  1I87 A;  1IET A;  1ES1 A;  1AW3 A;  1B5A A;  2I89 A;  1J0Q A;  1LCO A;  1MNY A;  3OZZ B;  2I96 A;  1LTD A;  1LQX A;  1IEU A;  1SOX A;  2M33 A;  3KS0 A;  1JEX A;  1EUE A;  1I5U A;  1MJ4 A;  1BLV A;  1U9M A;  1M20 A;  1SH4 A;  1X3X A;  1KBI A;  2OZ0 A;  1I8C A;  3X32 A;  1M59 A;  1AXX A;  3X33 A;  4B8N A;  1EHB A;  1BFX A;  2IBJ A;  1LJ0 A;  1ICC A; 
#chains in the Genus database with same CATH homology
 1B5M A;  3LF5 A;  1T0G A;  2AXX A;  1M2M A;  3MUS A;  1F04 A;  1M2I A;  1B5B A;  1HKO A;  1CXY A;  4HIN A;  1DO9 A;  1AQA A;  1FCB A;  1U9U A;  1NX7 A;  1J03 A;  1IB7 A;  3X35 A;  3X34 A;  1F03 A;  1CYO A;  1AWP A;  1LR6 A;  4HIL A;  4X8Y A;  1LDC A;  3NER A;  2KEO A;  1I87 A;  1IET A;  1ES1 A;  1AW3 A;  1B5A A;  2I89 A;  1J0Q A;  1LCO A;  1MNY A;  3OZZ B;  2I96 A;  1LTD A;  1LQX A;  1IEU A;  1SOX A;  2M33 A;  3KS0 A;  1JEX A;  1EUE A;  1I5U A;  1MJ4 A;  1BLV A;  1U9M A;  1M20 A;  1SH4 A;  1X3X A;  1KBI A;  2OZ0 A;  1I8C A;  3X32 A;  1M59 A;  1AXX A;  3X33 A;  4B8N A;  1EHB A;  1BFX A;  2IBJ A;  1LJ0 A;  1ICC A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1AWPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations