1B5M | Genus

Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	23
sequence length	84
structure length	84
Chain Sequence	AVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPNDLKP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 84 atoms

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84 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Electron transport
source organism	Rattus norvegicus
publication title	13C NMR spectroscopic and X-ray crystallographic study of the role played by mitochondrial cytochrome b5 heme propionates in the electrostatic binding to cytochrome c. pubmed doi rcsb
molecule keywords	CYTOCHROME B5
total genus	23
structure length	84
sequence length	84
ec nomenclature
pdb deposition date	1996-11-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.120.10	Alpha Beta	Roll	Flavocytochrome B2; Chain A, domain 1	Cytochrome b5-like heme/steroid binding domain	1b5mA00

1I8CA 3OZZB 1I5UA 1SOXA 1BLVA 1U9MA 2OZ0A 4HILA 1B5AA 1J0QA 1ICCA 4HINA 4X8YA 3X33A 1M20A 1EUEA 1LDCA 1CXYA 3KS0A 1B5MA 3X35A 1JEXA 1AXXA 3MUSA 1CYOA 1LTDA 1U9UA 1J03A 2KEOA 1B5BA 1KBIA 1LQXA 1AW3A 1LCOA 1M2MA 2M33A 1HKOA 1ES1A 2IBJA 1I87A 1IEUA 3LF5A 1M2IA 1M59A 1IB7A 1LR6A 1NX7A 1AWPA 2AXXA 4B8NA 3X32A 1LJ0A 1X3XA 1T0GA 1F04A 1IETA 3X34A 1MNYA 2I96A 2I89A 1DO9A 1BFXA 1EHBA 1MJ4A 1SH4A 1FCBA 1AQAA 1F03A 3NERA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1I8C A;  3OZZ B;  1I5U A;  1SOX A;  1BLV A;  1U9M A;  2OZ0 A;  4HIL A;  1B5A A;  1J0Q A;  1ICC A;  4HIN A;  4X8Y A;  3X33 A;  1M20 A;  1EUE A;  1LDC A;  1CXY A;  3KS0 A;  1B5M A;  3X35 A;  1JEX A;  1AXX A;  3MUS A;  1CYO A;  1LTD A;  1U9U A;  1J03 A;  2KEO A;  1B5B A;  1KBI A;  1LQX A;  1AW3 A;  1LCO A;  1M2M A;  2M33 A;  1HKO A;  1ES1 A;  2IBJ A;  1I87 A;  1IEU A;  3LF5 A;  1M2I A;  1M59 A;  1IB7 A;  1LR6 A;  1NX7 A;  1AWP A;  2AXX A;  4B8N A;  3X32 A;  1LJ0 A;  1X3X A;  1T0G A;  1F04 A;  1IET A;  3X34 A;  1MNY A;  2I96 A;  2I89 A;  1DO9 A;  1BFX A;  1EHB A;  1MJ4 A;  1SH4 A;  1FCB A;  1AQA A;  1F03 A;  3NER A; 
#chains in the Genus database with same CATH topology
 1I8C A;  3OZZ B;  1I5U A;  1SOX A;  1BLV A;  1U9M A;  2OZ0 A;  4HIL A;  1B5A A;  1J0Q A;  1ICC A;  4HIN A;  4X8Y A;  3X33 A;  1M20 A;  1EUE A;  1LDC A;  1CXY A;  3KS0 A;  1B5M A;  3X35 A;  1JEX A;  1AXX A;  3MUS A;  1CYO A;  1LTD A;  1U9U A;  1J03 A;  2KEO A;  1B5B A;  1KBI A;  1LQX A;  1AW3 A;  1LCO A;  1M2M A;  2M33 A;  1HKO A;  1ES1 A;  2IBJ A;  1I87 A;  1IEU A;  3LF5 A;  1M2I A;  1M59 A;  1IB7 A;  1LR6 A;  1NX7 A;  1AWP A;  2AXX A;  4B8N A;  3X32 A;  1LJ0 A;  1X3X A;  1T0G A;  1F04 A;  1IET A;  3X34 A;  1MNY A;  2I96 A;  2I89 A;  1DO9 A;  1BFX A;  1EHB A;  1MJ4 A;  1SH4 A;  1FCB A;  1AQA A;  1F03 A;  3NER A; 
#chains in the Genus database with same CATH homology
 1I8C A;  3OZZ B;  1I5U A;  1SOX A;  1BLV A;  1U9M A;  2OZ0 A;  4HIL A;  1B5A A;  1J0Q A;  1ICC A;  4HIN A;  4X8Y A;  3X33 A;  1M20 A;  1EUE A;  1LDC A;  1CXY A;  3KS0 A;  1B5M A;  3X35 A;  1JEX A;  1AXX A;  3MUS A;  1CYO A;  1LTD A;  1U9U A;  1J03 A;  2KEO A;  1B5B A;  1KBI A;  1LQX A;  1AW3 A;  1LCO A;  1M2M A;  2M33 A;  1HKO A;  1ES1 A;  2IBJ A;  1I87 A;  1IEU A;  3LF5 A;  1M2I A;  1M59 A;  1IB7 A;  1LR6 A;  1NX7 A;  1AWP A;  2AXX A;  4B8N A;  3X32 A;  1LJ0 A;  1X3X A;  1T0G A;  1F04 A;  1IET A;  3X34 A;  1MNY A;  2I96 A;  2I89 A;  1DO9 A;  1BFX A;  1EHB A;  1MJ4 A;  1SH4 A;  1FCB A;  1AQA A;  1F03 A;  3NER A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1B5MA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations