1BFX | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	94
structure length	94
Chain Sequence	DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPDDRSKIAKPSETL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 94 atoms

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94 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Electron transport
source organism	Rattus norvegicus
publication title	Solution structure of the B form of oxidized rat microsomal cytochrome b5 and backbone dynamics via 15N rotating-frame NMR-relaxation measurements. Biological implications. pubmed doi rcsb
molecule keywords	CYTOCHROME B5
total genus	25
structure length	94
sequence length	94
ec nomenclature
pdb deposition date	1998-05-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.120.10	Alpha Beta	Roll	Flavocytochrome B2; Chain A, domain 1	Cytochrome b5-like heme/steroid binding domain	1bfxA00

1ICCA 1I87A 1EUEA 1F03A 2OZ0A 1F04A 1FCBA 4HILA 1MNYA 1M59A 3X32A 1CYOA 3X35A 4B8NA 1T0GA 1EHBA 1CXYA 3LF5A 3MUSA 1IEUA 2I96A 1KBIA 1MJ4A 1U9MA 1X3XA 4HINA 1LDCA 1I8CA 1AQAA 1U9UA 1LR6A 1LTDA 1IB7A 2M33A 1I5UA 1NX7A 2KEOA 3OZZB 1AXXA 4X8YA 1LQXA 1AW3A 1M20A 1B5BA 1M2MA 3NERA 1IETA 3X34A 1LJ0A 1B5AA 1JEXA 1AWPA 1ES1A 1B5MA 1LCOA 1J03A 1DO9A 2AXXA 1HKOA 1J0QA 1M2IA 1SOXA 1BLVA 3KS0A 3X33A 2IBJA 1SH4A 2I89A 1BFXA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1ICC A;  1I87 A;  1EUE A;  1F03 A;  2OZ0 A;  1F04 A;  1FCB A;  4HIL A;  1MNY A;  1M59 A;  3X32 A;  1CYO A;  3X35 A;  4B8N A;  1T0G A;  1EHB A;  1CXY A;  3LF5 A;  3MUS A;  1IEU A;  2I96 A;  1KBI A;  1MJ4 A;  1U9M A;  1X3X A;  4HIN A;  1LDC A;  1I8C A;  1AQA A;  1U9U A;  1LR6 A;  1LTD A;  1IB7 A;  2M33 A;  1I5U A;  1NX7 A;  2KEO A;  3OZZ B;  1AXX A;  4X8Y A;  1LQX A;  1AW3 A;  1M20 A;  1B5B A;  1M2M A;  3NER A;  1IET A;  3X34 A;  1LJ0 A;  1B5A A;  1JEX A;  1AWP A;  1ES1 A;  1B5M A;  1LCO A;  1J03 A;  1DO9 A;  2AXX A;  1HKO A;  1J0Q A;  1M2I A;  1SOX A;  1BLV A;  3KS0 A;  3X33 A;  2IBJ A;  1SH4 A;  2I89 A;  1BFX A; 
#chains in the Genus database with same CATH topology
 1ICC A;  1I87 A;  1EUE A;  1F03 A;  2OZ0 A;  1F04 A;  1FCB A;  4HIL A;  1MNY A;  1M59 A;  3X32 A;  1CYO A;  3X35 A;  4B8N A;  1T0G A;  1EHB A;  1CXY A;  3LF5 A;  3MUS A;  1IEU A;  2I96 A;  1KBI A;  1MJ4 A;  1U9M A;  1X3X A;  4HIN A;  1LDC A;  1I8C A;  1AQA A;  1U9U A;  1LR6 A;  1LTD A;  1IB7 A;  2M33 A;  1I5U A;  1NX7 A;  2KEO A;  3OZZ B;  1AXX A;  4X8Y A;  1LQX A;  1AW3 A;  1M20 A;  1B5B A;  1M2M A;  3NER A;  1IET A;  3X34 A;  1LJ0 A;  1B5A A;  1JEX A;  1AWP A;  1ES1 A;  1B5M A;  1LCO A;  1J03 A;  1DO9 A;  2AXX A;  1HKO A;  1J0Q A;  1M2I A;  1SOX A;  1BLV A;  3KS0 A;  3X33 A;  2IBJ A;  1SH4 A;  2I89 A;  1BFX A; 
#chains in the Genus database with same CATH homology
 1ICC A;  1I87 A;  1EUE A;  1F03 A;  2OZ0 A;  1F04 A;  1FCB A;  4HIL A;  1MNY A;  1M59 A;  3X32 A;  1CYO A;  3X35 A;  4B8N A;  1T0G A;  1EHB A;  1CXY A;  3LF5 A;  3MUS A;  1IEU A;  2I96 A;  1KBI A;  1MJ4 A;  1U9M A;  1X3X A;  4HIN A;  1LDC A;  1I8C A;  1AQA A;  1U9U A;  1LR6 A;  1LTD A;  1IB7 A;  2M33 A;  1I5U A;  1NX7 A;  2KEO A;  3OZZ B;  1AXX A;  4X8Y A;  1LQX A;  1AW3 A;  1M20 A;  1B5B A;  1M2M A;  3NER A;  1IET A;  3X34 A;  1LJ0 A;  1B5A A;  1JEX A;  1AWP A;  1ES1 A;  1B5M A;  1LCO A;  1J03 A;  1DO9 A;  2AXX A;  1HKO A;  1J0Q A;  1M2I A;  1SOX A;  1BLV A;  3KS0 A;  3X33 A;  2IBJ A;  1SH4 A;  2I89 A;  1BFX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1BFXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations