1CXYA

Structure and characterization of ectothiorhodospira vacuolata cytochrome b558, a prokaryotic homologue of cytochrome b5
Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
81
structure length
81
Chain Sequence
TLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSSLAARLLQRYLIGTL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (12-16)S1 (19-20)TII1 (45-48)TIV2 (27-30)S3 (31-34)TI2 (47-50)S2 (23-28)TI1 (20-23)TII2 (52-55)EMPTYAH3 (72-81)3H2 (50-52)AH2 (58-63)TI'2 (63-66)TIV3 (64-67)3H1 (36-41)O1 (24-53)TVIII1 (16-19)Updating...
connected with : NaN
molecule tags Electron transport
source organism Ectothiorhodospira shaposhnikovii
publication title Structure and characterization of Ectothiorhodospira vacuolata cytochrome b(558), a prokaryotic homologue of cytochrome b(5).
pubmed doi rcsb
molecule keywords CYTOCHROME B5
total genus 20
structure length 81
sequence length 81
ec nomenclature
pdb deposition date 1999-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1cxyA00
1IETA 1SOXA 1MNYA 1ES1A 1M2MA 3LF5A 1KBIA 2IBJA 3X34A 1I8CA 1ICCA 2KEOA 4HILA 1JEXA 1IB7A 2I96A 3KS0A 3NERA 1LCOA 1F04A 1AQAA 1AWPA 1EUEA 1LTDA 1B5BA 1BLVA 4B8NA 1SH4A 2I89A 1I87A 1CYOA 1M20A 1M2IA 1T0GA 1U9MA 1F03A 1J03A 1B5AA 1CXYA 3OZZB 1IEUA 1MJ4A 1FCBA 1LJ0A 1AW3A 1NX7A 1LDCA 3MUSA 2AXXA 3X35A 4X8YA 3X32A 1BFXA 1M59A 2OZ0A 3X33A 4HINA 1U9UA 1B5MA 1X3XA 2M33A 1EHBA 1AXXA 1HKOA 1J0QA 1I5UA 1LQXA 1LR6A 1DO9A
chains in the Genus database with same CATH superfamily
1IETA 1SOXA 1MNYA 1ES1A 1M2MA 3LF5A 1KBIA 2IBJA 3X34A 1I8CA 1ICCA 2KEOA 4HILA 1JEXA 1IB7A 2I96A 3KS0A 3NERA 1LCOA 1F04A 1AQAA 1AWPA 1EUEA 1LTDA 1B5BA 1BLVA 4B8NA 1SH4A 2I89A 1I87A 1CYOA 1M20A 1M2IA 1T0GA 1U9MA 1F03A 1J03A 1B5AA 1CXYA 3OZZB 1IEUA 1MJ4A 1FCBA 1LJ0A 1AW3A 1NX7A 1LDCA 3MUSA 2AXXA 3X35A 4X8YA 3X32A 1BFXA 1M59A 2OZ0A 3X33A 4HINA 1U9UA 1B5MA 1X3XA 2M33A 1EHBA 1AXXA 1HKOA 1J0QA 1I5UA 1LQXA 1LR6A 1DO9A
chains in the Genus database with same CATH topology
1IETA 1SOXA 1MNYA 1ES1A 1M2MA 3LF5A 1KBIA 2IBJA 3X34A 1I8CA 1ICCA 2KEOA 4HILA 1JEXA 1IB7A 2I96A 3KS0A 3NERA 1LCOA 1F04A 1AQAA 1AWPA 1EUEA 1LTDA 1B5BA 1BLVA 4B8NA 1SH4A 2I89A 1I87A 1CYOA 1M20A 1M2IA 1T0GA 1U9MA 1F03A 1J03A 1B5AA 1CXYA 3OZZB 1IEUA 1MJ4A 1FCBA 1LJ0A 1AW3A 1NX7A 1LDCA 3MUSA 2AXXA 3X35A 4X8YA 3X32A 1BFXA 1M59A 2OZ0A 3X33A 4HINA 1U9UA 1B5MA 1X3XA 2M33A 1EHBA 1AXXA 1HKOA 1J0QA 1I5UA 1LQXA 1LR6A 1DO9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IET A;  1SOX A;  1MNY A;  1ES1 A;  1M2M A;  3LF5 A;  1KBI A;  2IBJ A;  3X34 A;  1I8C A;  1ICC A;  2KEO A;  4HIL A;  1JEX A;  1IB7 A;  2I96 A;  3KS0 A;  3NER A;  1LCO A;  1F04 A;  1AQA A;  1AWP A;  1EUE A;  1LTD A;  1B5B A;  1BLV A;  4B8N A;  1SH4 A;  2I89 A;  1I87 A;  1CYO A;  1M20 A;  1M2I A;  1T0G A;  1U9M A;  1F03 A;  1J03 A;  1B5A A;  1CXY A;  3OZZ B;  1IEU A;  1MJ4 A;  1FCB A;  1LJ0 A;  1AW3 A;  1NX7 A;  1LDC A;  3MUS A;  2AXX A;  3X35 A;  4X8Y A;  3X32 A;  1BFX A;  1M59 A;  2OZ0 A;  3X33 A;  4HIN A;  1U9U A;  1B5M A;  1X3X A;  2M33 A;  1EHB A;  1AXX A;  1HKO A;  1J0Q A;  1I5U A;  1LQX A;  1LR6 A;  1DO9 A; 
#chains in the Genus database with same CATH topology
 1IET A;  1SOX A;  1MNY A;  1ES1 A;  1M2M A;  3LF5 A;  1KBI A;  2IBJ A;  3X34 A;  1I8C A;  1ICC A;  2KEO A;  4HIL A;  1JEX A;  1IB7 A;  2I96 A;  3KS0 A;  3NER A;  1LCO A;  1F04 A;  1AQA A;  1AWP A;  1EUE A;  1LTD A;  1B5B A;  1BLV A;  4B8N A;  1SH4 A;  2I89 A;  1I87 A;  1CYO A;  1M20 A;  1M2I A;  1T0G A;  1U9M A;  1F03 A;  1J03 A;  1B5A A;  1CXY A;  3OZZ B;  1IEU A;  1MJ4 A;  1FCB A;  1LJ0 A;  1AW3 A;  1NX7 A;  1LDC A;  3MUS A;  2AXX A;  3X35 A;  4X8Y A;  3X32 A;  1BFX A;  1M59 A;  2OZ0 A;  3X33 A;  4HIN A;  1U9U A;  1B5M A;  1X3X A;  2M33 A;  1EHB A;  1AXX A;  1HKO A;  1J0Q A;  1I5U A;  1LQX A;  1LR6 A;  1DO9 A; 
#chains in the Genus database with same CATH homology
 1IET A;  1SOX A;  1MNY A;  1ES1 A;  1M2M A;  3LF5 A;  1KBI A;  2IBJ A;  3X34 A;  1I8C A;  1ICC A;  2KEO A;  4HIL A;  1JEX A;  1IB7 A;  2I96 A;  3KS0 A;  3NER A;  1LCO A;  1F04 A;  1AQA A;  1AWP A;  1EUE A;  1LTD A;  1B5B A;  1BLV A;  4B8N A;  1SH4 A;  2I89 A;  1I87 A;  1CYO A;  1M20 A;  1M2I A;  1T0G A;  1U9M A;  1F03 A;  1J03 A;  1B5A A;  1CXY A;  3OZZ B;  1IEU A;  1MJ4 A;  1FCB A;  1LJ0 A;  1AW3 A;  1NX7 A;  1LDC A;  3MUS A;  2AXX A;  3X35 A;  4X8Y A;  3X32 A;  1BFX A;  1M59 A;  2OZ0 A;  3X33 A;  4HIN A;  1U9U A;  1B5M A;  1X3X A;  2M33 A;  1EHB A;  1AXX A;  1HKO A;  1J0Q A;  1I5U A;  1LQX A;  1LR6 A;  1DO9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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