1EHB | Genus

Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	24
sequence length	82
structure length	82
Chain Sequence	AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 82 atoms

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82 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Electron transport
source organism	Bos taurus
publication title	Crystal structure of recombinant trypsin-solubilized fragment of cytochrome b(5) and the structural comparison with Val61His mutant. pubmed doi rcsb
molecule keywords	PROTEIN (CYTOCHROME B5)
total genus	24
structure length	82
sequence length	82
ec nomenclature
pdb deposition date	2000-02-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.120.10	Alpha Beta	Roll	Flavocytochrome B2; Chain A, domain 1	Cytochrome b5-like heme/steroid binding domain	1ehbA00

1CYOA 1NX7A 1I8CA 2IBJA 3NERA 2AXXA 3X33A 1IEUA 1I87A 1AW3A 1KBIA 1MJ4A 1LR6A 4HILA 1B5AA 3LF5A 1J0QA 1CXYA 1B5MA 1M20A 3KS0A 2I96A 3X34A 1LJ0A 3X35A 1AXXA 1B5BA 1LDCA 1U9UA 1LCOA 4HINA 1F04A 1FCBA 2M33A 1AWPA 1M2IA 2KEOA 1LTDA 1SH4A 1HKOA 1EUEA 1I5UA 4B8NA 1X3XA 1MNYA 1SOXA 1BFXA 4X8YA 1F03A 1LQXA 1J03A 1ICCA 2I89A 3OZZB 1EHBA 1M2MA 1IETA 1T0GA 1ES1A 1IB7A 1JEXA 1DO9A 2OZ0A 1AQAA 1M59A 3X32A 1U9MA 3MUSA 1BLVA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1CYO A;  1NX7 A;  1I8C A;  2IBJ A;  3NER A;  2AXX A;  3X33 A;  1IEU A;  1I87 A;  1AW3 A;  1KBI A;  1MJ4 A;  1LR6 A;  4HIL A;  1B5A A;  3LF5 A;  1J0Q A;  1CXY A;  1B5M A;  1M20 A;  3KS0 A;  2I96 A;  3X34 A;  1LJ0 A;  3X35 A;  1AXX A;  1B5B A;  1LDC A;  1U9U A;  1LCO A;  4HIN A;  1F04 A;  1FCB A;  2M33 A;  1AWP A;  1M2I A;  2KEO A;  1LTD A;  1SH4 A;  1HKO A;  1EUE A;  1I5U A;  4B8N A;  1X3X A;  1MNY A;  1SOX A;  1BFX A;  4X8Y A;  1F03 A;  1LQX A;  1J03 A;  1ICC A;  2I89 A;  3OZZ B;  1EHB A;  1M2M A;  1IET A;  1T0G A;  1ES1 A;  1IB7 A;  1JEX A;  1DO9 A;  2OZ0 A;  1AQA A;  1M59 A;  3X32 A;  1U9M A;  3MUS A;  1BLV A; 
#chains in the Genus database with same CATH topology
 1CYO A;  1NX7 A;  1I8C A;  2IBJ A;  3NER A;  2AXX A;  3X33 A;  1IEU A;  1I87 A;  1AW3 A;  1KBI A;  1MJ4 A;  1LR6 A;  4HIL A;  1B5A A;  3LF5 A;  1J0Q A;  1CXY A;  1B5M A;  1M20 A;  3KS0 A;  2I96 A;  3X34 A;  1LJ0 A;  3X35 A;  1AXX A;  1B5B A;  1LDC A;  1U9U A;  1LCO A;  4HIN A;  1F04 A;  1FCB A;  2M33 A;  1AWP A;  1M2I A;  2KEO A;  1LTD A;  1SH4 A;  1HKO A;  1EUE A;  1I5U A;  4B8N A;  1X3X A;  1MNY A;  1SOX A;  1BFX A;  4X8Y A;  1F03 A;  1LQX A;  1J03 A;  1ICC A;  2I89 A;  3OZZ B;  1EHB A;  1M2M A;  1IET A;  1T0G A;  1ES1 A;  1IB7 A;  1JEX A;  1DO9 A;  2OZ0 A;  1AQA A;  1M59 A;  3X32 A;  1U9M A;  3MUS A;  1BLV A; 
#chains in the Genus database with same CATH homology
 1CYO A;  1NX7 A;  1I8C A;  2IBJ A;  3NER A;  2AXX A;  3X33 A;  1IEU A;  1I87 A;  1AW3 A;  1KBI A;  1MJ4 A;  1LR6 A;  4HIL A;  1B5A A;  3LF5 A;  1J0Q A;  1CXY A;  1B5M A;  1M20 A;  3KS0 A;  2I96 A;  3X34 A;  1LJ0 A;  3X35 A;  1AXX A;  1B5B A;  1LDC A;  1U9U A;  1LCO A;  4HIN A;  1F04 A;  1FCB A;  2M33 A;  1AWP A;  1M2I A;  2KEO A;  1LTD A;  1SH4 A;  1HKO A;  1EUE A;  1I5U A;  4B8N A;  1X3X A;  1MNY A;  1SOX A;  1BFX A;  4X8Y A;  1F03 A;  1LQX A;  1J03 A;  1ICC A;  2I89 A;  3OZZ B;  1EHB A;  1M2M A;  1IET A;  1T0G A;  1ES1 A;  1IB7 A;  1JEX A;  1DO9 A;  2OZ0 A;  1AQA A;  1M59 A;  3X32 A;  1U9M A;  3MUS A;  1BLV A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1EHBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations